3FUBB

Crystal structure of gdnf-gfralpha1 complex
Total Genus 12

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
95
structure length
92
Chain Sequence
GCVLTAIHLNVTDLGLGYETKEELIFRYCSGSCDAAETTYDKILKNLSRNRRLKVGQACCRPIAFDDDLSFLDDNLVYHILRKHSAKRCGCI

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS2 (62-69)O11 (41-102)S1 (42-49)AH1 (78-89)3H1 (50-53)Updating...
connected with : NaN
publication title Comparison of GFL-GFRalpha complexes: further evidence relating GFL bend angle to RET signalling
pubmed doi rcsb
molecule keywords GDNF family receptor alpha-1
molecule tags Hormone
source organism Homo sapiens
total genus 12
structure length 92
sequence length 95
chains with identical sequence D
ec nomenclature
pdb deposition date 2009-01-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00019 TGF_beta Transforming growth factor beta like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.90.10 Mainly Beta Ribbon Cystine Knot Cytokines, subunit B Cystine-knot cytokines 3fubB00
3E07A 4QHUC 4EDWV 2ARVA 3V2AA 1B8MB 3QB4A 1HRPA 1BJ1V 2KD3A 3RJRA 2GNNA 1QFWB 1TZIV 4HR9A 4YCIC 2FJGV 2QR0C 2VPFA 2QJ9A 2VWEA 1AOCA 2VXSA 4LXRJ 5FV2V 1BNDA 3P9WA 1SGFB 5BPUA 2FJHV 1B98A 2TGIA 5BQCA 2X1WA 4ZFFC 1BETA 3BDYV 5BQ8D 4YCGC 2R52A 4EFVA 4MQWA 4UI0A 3IJ2A 4XPJA 1KTZA 3SEKB 2X1XE 4WPBA 1MKGA 4EC7A 4GLNE 1HCNB 2H62A 1ZKZA 3BUKA 5F3HI 3V6BA 4MQWB 1VPPV 1NYSB 3S1KV 1WWWV 3EVSB 1E9JA 1KLAA 5HHVA 5HHCA 1HRPB 1WQ8A 4BV4L 1HD4A 5BQ8A 1B8KA 1SG1A 1CZ8V 4KXZA 1NT3A 1PDGA 4EDXV 3BMPA 1BNDB 1NYUB 5E4GA 5BQBA 4GLSE 2GH0C 4HSAA 3QTKA 1REUA 3FUBB 2QCWA 2P6AA 2C7WA 1M4UA 4X1JA 1BMPA 4KV5A 4UHZA 5BQEA 2V5EB 5JZ7A 3HH2A 2QJAA 1XWDA 1LXIA 1WQ9A 5HI5A 1FL7A 3KFDA 1REWA 4AY9A 1FZVA 1FLTV 1BTGA 4FAOA 2IFGE 4UHYA 1WQ9B 4ZBNA 1TGJA 2R53A 1LX5A 5HHDA 1KATW 2H64A 1TGKA 5HK5A 4N1DA 1ES7A 1B8MA 2ARPA 4QCIC 4HQXA 5HI3A 1KLCA 1MJVA 2QCQA 3JVFA 2B0UA 5HHXA 1S4YB 1QFWA 1WAQA 5BQ8B 4QAFC 4MIDA 4EAXA 1RV6V 3MJGA 3S1BV 5FV1V 1JPYA 4HQUA 1DZ7A 2PJYA 4UI1A 1QTYR 1TFGA 4MPLA 5HI4A 2QJBA 2XACA 3B4VA 3BK3A 5HK5E 4UI2B 5AEJA 5F3BC 2ASKA 2GYZA 4KZNA 3EO1C 5BQEB 4LXSJ 1TZHV 1AGQA 1XWDB 1HCFA 1M4UL 1FL7B 2XV7A 4AY9B 1MKKA 3MJKA 1HCNA 2BHKA 1VPFA 2GOOA 2GYRA
chains in the Genus database with same CATH superfamily
3E07A 4QHUC 4EDWV 2ARVA 3V2AA 1B8MB 3QB4A 1HRPA 1BJ1V 2KD3A 3RJRA 2GNNA 1QFWB 1TZIV 4HR9A 4YCIC 2FJGV 2QR0C 2VPFA 2QJ9A 2VWEA 1AOCA 2VXSA 4LXRJ 5FV2V 1BNDA 3P9WA 1SGFB 5BPUA 2FJHV 1B98A 2TGIA 5BQCA 2X1WA 4ZFFC 1BETA 3BDYV 5BQ8D 4YCGC 2R52A 4EFVA 4MQWA 4UI0A 3IJ2A 4XPJA 1KTZA 3SEKB 2X1XE 4WPBA 1MKGA 4EC7A 4GLNE 1HCNB 2H62A 1ZKZA 3BUKA 5F3HI 3V6BA 4MQWB 1VPPV 1NYSB 3S1KV 1WWWV 3EVSB 1E9JA 1KLAA 5HHVA 5HHCA 1HRPB 1WQ8A 4BV4L 1HD4A 5BQ8A 1B8KA 1SG1A 1CZ8V 4KXZA 1NT3A 1PDGA 4EDXV 3BMPA 1BNDB 1NYUB 5E4GA 5BQBA 4GLSE 2GH0C 4HSAA 3QTKA 1REUA 3FUBB 2QCWA 2P6AA 2C7WA 1M4UA 4X1JA 1BMPA 4KV5A 4UHZA 5BQEA 2V5EB 5JZ7A 3HH2A 2QJAA 1XWDA 1LXIA 1WQ9A 5HI5A 1FL7A 3KFDA 1REWA 4AY9A 1FZVA 1FLTV 1BTGA 4FAOA 2IFGE 4UHYA 1WQ9B 4ZBNA 1TGJA 2R53A 1LX5A 5HHDA 1KATW 2H64A 1TGKA 5HK5A 4N1DA 1ES7A 1B8MA 2ARPA 4QCIC 4HQXA 5HI3A 1KLCA 1MJVA 2QCQA 3JVFA 2B0UA 5HHXA 1S4YB 1QFWA 1WAQA 5BQ8B 4QAFC 4MIDA 4EAXA 1RV6V 3MJGA 3S1BV 5FV1V 1JPYA 4HQUA 1DZ7A 2PJYA 4UI1A 1QTYR 1TFGA 4MPLA 5HI4A 2QJBA 2XACA 3B4VA 3BK3A 5HK5E 4UI2B 5AEJA 5F3BC 2ASKA 2GYZA 4KZNA 3EO1C 5BQEB 4LXSJ 1TZHV 1AGQA 1XWDB 1HCFA 1M4UL 1FL7B 2XV7A 4AY9B 1MKKA 3MJKA 1HCNA 2BHKA 1VPFA 2GOOA 2GYRA
chains in the Genus database with same CATH topology
3E07A 4QHUC 4EDWV 2ARVA 3V2AA 1B8MB 3QB4A 1HRPA 1BJ1V 2KD3A 3RJRA 2GNNA 1QFWB 1TZIV 4HR9A 4YCIC 2FJGV 2QR0C 2VPFA 2QJ9A 2VWEA 1AOCA 2VXSA 4LXRJ 5FV2V 1BNDA 3P9WA 1SGFB 5BPUA 2FJHV 1B98A 2TGIA 5BQCA 2X1WA 4ZFFC 1BETA 3BDYV 5BQ8D 4YCGC 2R52A 4EFVA 4MQWA 4UI0A 3IJ2A 4XPJA 1KTZA 3SEKB 2X1XE 4WPBA 1MKGA 4EC7A 4GLNE 1HCNB 2H62A 1ZKZA 3BUKA 5F3HI 3V6BA 4MQWB 1VPPV 1NYSB 3S1KV 1WWWV 3EVSB 1E9JA 1KLAA 5HHVA 5HHCA 1HRPB 1WQ8A 4BV4L 1HD4A 5BQ8A 1B8KA 1SG1A 1CZ8V 4KXZA 1NT3A 1PDGA 4EDXV 3BMPA 1BNDB 1NYUB 5E4GA 5BQBA 4GLSE 2GH0C 4HSAA 3QTKA 1REUA 3FUBB 2QCWA 2P6AA 2C7WA 1M4UA 4X1JA 1BMPA 4KV5A 4UHZA 5BQEA 2V5EB 5JZ7A 3HH2A 2QJAA 1XWDA 1LXIA 1WQ9A 5HI5A 1FL7A 3KFDA 1REWA 4AY9A 1FZVA 1FLTV 1BTGA 4FAOA 2IFGE 4UHYA 1WQ9B 4ZBNA 1TGJA 2R53A 1LX5A 5HHDA 1KATW 2H64A 1TGKA 5HK5A 4N1DA 1ES7A 1B8MA 2ARPA 4QCIC 4HQXA 5HI3A 1KLCA 1MJVA 2QCQA 3JVFA 2B0UA 5HHXA 1S4YB 1QFWA 1WAQA 5BQ8B 4QAFC 4MIDA 4EAXA 1RV6V 3MJGA 3S1BV 5FV1V 1JPYA 4HQUA 1DZ7A 2PJYA 4UI1A 1QTYR 1TFGA 4MPLA 5HI4A 2QJBA 2XACA 3B4VA 3BK3A 5HK5E 4UI2B 5AEJA 5F3BC 2ASKA 2GYZA 4KZNA 3EO1C 5BQEB 4LXSJ 1TZHV 1AGQA 1XWDB 1HCFA 1M4UL 1FL7B 2XV7A 4AY9B 1MKKA 3MJKA 1HCNA 2BHKA 1VPFA 2GOOA 2GYRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3E07 A;  4QHU C;  4EDW V;  2ARV A;  3V2A A;  1B8M B;  3QB4 A;  1HRP A;  1BJ1 V;  2KD3 A;  3RJR A;  2GNN A;  1QFW B;  1TZI V;  4HR9 A;  4YCI C;  2FJG V;  2QR0 C;  2VPF A;  2QJ9 A;  2VWE A;  1AOC A;  2VXS A;  4LXR J;  5FV2 V;  1BND A;  3P9W A;  1SGF B;  5BPU A;  2FJH V;  1B98 A;  2TGI A;  5BQC A;  2X1W A;  4ZFF C;  1BET A;  3BDY V;  5BQ8 D;  4YCG C;  2R52 A;  4EFV A;  4MQW A;  4UI0 A;  3IJ2 A;  4XPJ A;  1KTZ A;  3SEK B;  2X1X E;  4WPB A;  1MKG A;  4EC7 A;  4GLN E;  1HCN B;  2H62 A;  1ZKZ A;  3BUK A;  5F3H I;  3V6B A;  4MQW B;  1VPP V;  1NYS B;  3S1K V;  1WWW V;  3EVS B;  1E9J A;  1KLA A;  5HHV A;  5HHC A;  1HRP B;  1WQ8 A;  4BV4 L;  1HD4 A;  5BQ8 A;  1B8K A;  1SG1 A;  1CZ8 V;  4KXZ A;  1NT3 A;  1PDG A;  4EDX V;  3BMP A;  1BND B;  1NYU B;  5E4G A;  5BQB A;  4GLS E;  2GH0 C;  4HSA A;  3QTK A;  1REU A;  3FUB B;  2QCW A;  2P6A A;  2C7W A;  1M4U A;  4X1J A;  1BMP A;  4KV5 A;  4UHZ A;  5BQE A;  2V5E B;  5JZ7 A;  3HH2 A;  2QJA A;  1XWD A;  1LXI A;  1WQ9 A;  5HI5 A;  1FL7 A;  3KFD A;  1REW A;  4AY9 A;  1FZV A;  1FLT V;  1BTG A;  4FAO A;  2IFG E;  4UHY A;  1WQ9 B;  4ZBN A;  1TGJ A;  2R53 A;  1LX5 A;  5HHD A;  1KAT W;  2H64 A;  1TGK A;  5HK5 A;  4N1D A;  1ES7 A;  1B8M A;  2ARP A;  4QCI C;  4HQX A;  5HI3 A;  1KLC A;  1MJV A;  2QCQ A;  3JVF A;  2B0U A;  5HHX A;  1S4Y B;  1QFW A;  1WAQ A;  5BQ8 B;  4QAF C;  4MID A;  4EAX A;  1RV6 V;  3MJG A;  3S1B V;  5FV1 V;  1JPY A;  4HQU A;  1DZ7 A;  2PJY A;  4UI1 A;  1QTY R;  1TFG A;  4MPL A;  5HI4 A;  2QJB A;  2XAC A;  3B4V A;  3BK3 A;  5HK5 E;  4UI2 B;  5AEJ A;  5F3B C;  2ASK A;  2GYZ A;  4KZN A;  3EO1 C;  5BQE B;  4LXS J;  1TZH V;  1AGQ A;  1XWD B;  1HCF A;  1M4U L;  1FL7 B;  2XV7 A;  4AY9 B;  1MKK A;  3MJK A;  1HCN A;  2BHK A;  1VPF A;  2GOO A;  2GYR A; 
#chains in the Genus database with same CATH topology
 3E07 A;  4QHU C;  4EDW V;  2ARV A;  3V2A A;  1B8M B;  3QB4 A;  1HRP A;  1BJ1 V;  2KD3 A;  3RJR A;  2GNN A;  1QFW B;  1TZI V;  4HR9 A;  4YCI C;  2FJG V;  2QR0 C;  2VPF A;  2QJ9 A;  2VWE A;  1AOC A;  2VXS A;  4LXR J;  5FV2 V;  1BND A;  3P9W A;  1SGF B;  5BPU A;  2FJH V;  1B98 A;  2TGI A;  5BQC A;  2X1W A;  4ZFF C;  1BET A;  3BDY V;  5BQ8 D;  4YCG C;  2R52 A;  4EFV A;  4MQW A;  4UI0 A;  3IJ2 A;  4XPJ A;  1KTZ A;  3SEK B;  2X1X E;  4WPB A;  1MKG A;  4EC7 A;  4GLN E;  1HCN B;  2H62 A;  1ZKZ A;  3BUK A;  5F3H I;  3V6B A;  4MQW B;  1VPP V;  1NYS B;  3S1K V;  1WWW V;  3EVS B;  1E9J A;  1KLA A;  5HHV A;  5HHC A;  1HRP B;  1WQ8 A;  4BV4 L;  1HD4 A;  5BQ8 A;  1B8K A;  1SG1 A;  1CZ8 V;  4KXZ A;  1NT3 A;  1PDG A;  4EDX V;  3BMP A;  1BND B;  1NYU B;  5E4G A;  5BQB A;  4GLS E;  2GH0 C;  4HSA A;  3QTK A;  1REU A;  3FUB B;  2QCW A;  2P6A A;  2C7W A;  1M4U A;  4X1J A;  1BMP A;  4KV5 A;  4UHZ A;  5BQE A;  2V5E B;  5JZ7 A;  3HH2 A;  2QJA A;  1XWD A;  1LXI A;  1WQ9 A;  5HI5 A;  1FL7 A;  3KFD A;  1REW A;  4AY9 A;  1FZV A;  1FLT V;  1BTG A;  4FAO A;  2IFG E;  4UHY A;  1WQ9 B;  4ZBN A;  1TGJ A;  2R53 A;  1LX5 A;  5HHD A;  1KAT W;  2H64 A;  1TGK A;  5HK5 A;  4N1D A;  1ES7 A;  1B8M A;  2ARP A;  4QCI C;  4HQX A;  5HI3 A;  1KLC A;  1MJV A;  2QCQ A;  3JVF A;  2B0U A;  5HHX A;  1S4Y B;  1QFW A;  1WAQ A;  5BQ8 B;  4QAF C;  4MID A;  4EAX A;  1RV6 V;  3MJG A;  3S1B V;  5FV1 V;  1JPY A;  4HQU A;  1DZ7 A;  2PJY A;  4UI1 A;  1QTY R;  1TFG A;  4MPL A;  5HI4 A;  2QJB A;  2XAC A;  3B4V A;  3BK3 A;  5HK5 E;  4UI2 B;  5AEJ A;  5F3B C;  2ASK A;  2GYZ A;  4KZN A;  3EO1 C;  5BQE B;  4LXS J;  1TZH V;  1AGQ A;  1XWD B;  1HCF A;  1M4U L;  1FL7 B;  2XV7 A;  4AY9 B;  1MKK A;  3MJK A;  1HCN A;  2BHK A;  1VPF A;  2GOO A;  2GYR A; 
#chains in the Genus database with same CATH homology
 3E07 A;  4QHU C;  4EDW V;  2ARV A;  3V2A A;  1B8M B;  3QB4 A;  1HRP A;  1BJ1 V;  2KD3 A;  3RJR A;  2GNN A;  1QFW B;  1TZI V;  4HR9 A;  4YCI C;  2FJG V;  2QR0 C;  2VPF A;  2QJ9 A;  2VWE A;  1AOC A;  2VXS A;  4LXR J;  5FV2 V;  1BND A;  3P9W A;  1SGF B;  5BPU A;  2FJH V;  1B98 A;  2TGI A;  5BQC A;  2X1W A;  4ZFF C;  1BET A;  3BDY V;  5BQ8 D;  4YCG C;  2R52 A;  4EFV A;  4MQW A;  4UI0 A;  3IJ2 A;  4XPJ A;  1KTZ A;  3SEK B;  2X1X E;  4WPB A;  1MKG A;  4EC7 A;  4GLN E;  1HCN B;  2H62 A;  1ZKZ A;  3BUK A;  5F3H I;  3V6B A;  4MQW B;  1VPP V;  1NYS B;  3S1K V;  1WWW V;  3EVS B;  1E9J A;  1KLA A;  5HHV A;  5HHC A;  1HRP B;  1WQ8 A;  4BV4 L;  1HD4 A;  5BQ8 A;  1B8K A;  1SG1 A;  1CZ8 V;  4KXZ A;  1NT3 A;  1PDG A;  4EDX V;  3BMP A;  1BND B;  1NYU B;  5E4G A;  5BQB A;  4GLS E;  2GH0 C;  4HSA A;  3QTK A;  1REU A;  3FUB B;  2QCW A;  2P6A A;  2C7W A;  1M4U A;  4X1J A;  1BMP A;  4KV5 A;  4UHZ A;  5BQE A;  2V5E B;  5JZ7 A;  3HH2 A;  2QJA A;  1XWD A;  1LXI A;  1WQ9 A;  5HI5 A;  1FL7 A;  3KFD A;  1REW A;  4AY9 A;  1FZV A;  1FLT V;  1BTG A;  4FAO A;  2IFG E;  4UHY A;  1WQ9 B;  4ZBN A;  1TGJ A;  2R53 A;  1LX5 A;  5HHD A;  1KAT W;  2H64 A;  1TGK A;  5HK5 A;  4N1D A;  1ES7 A;  1B8M A;  2ARP A;  4QCI C;  4HQX A;  5HI3 A;  1KLC A;  1MJV A;  2QCQ A;  3JVF A;  2B0U A;  5HHX A;  1S4Y B;  1QFW A;  1WAQ A;  5BQ8 B;  4QAF C;  4MID A;  4EAX A;  1RV6 V;  3MJG A;  3S1B V;  5FV1 V;  1JPY A;  4HQU A;  1DZ7 A;  2PJY A;  4UI1 A;  1QTY R;  1TFG A;  4MPL A;  5HI4 A;  2QJB A;  2XAC A;  3B4V A;  3BK3 A;  5HK5 E;  4UI2 B;  5AEJ A;  5F3B C;  2ASK A;  2GYZ A;  4KZN A;  3EO1 C;  5BQE B;  4LXS J;  1TZH V;  1AGQ A;  1XWD B;  1HCF A;  1M4U L;  1FL7 B;  2XV7 A;  4AY9 B;  1MKK A;  3MJK A;  1HCN A;  2BHK A;  1VPF A;  2GOO A;  2GYR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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