4EC7A

Cobra ngf in complex with lipid
Total Genus 15

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
108
structure length
108
Chain Sequence
GEHSVCDSVSAWVTKTTATDIKGNTVTVMENVNLDNKVYKEYFFETKCKNPNPEPSGCRGIDSSHWNSYCTETDTFIKALTMEGNQASWRFIRIETACVCVITKKKGN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS8 (94-112)TIV2 (41-44)TVIII1 (12-15)S5 (45-48)S1 (16-21)TIV5 (90-93)S2 (25-28)S7 (74-91)TI1 (28-31)S4 (39-42)S3 (33-36)3H1 (71-73)S6 (51-56)TIV3 (56-59)TII1 (66-69)TVIII2 (60-63)TI2 (62-65)TIV1 (23-26)Updating...
connected with : NaN
publication title Structural and functional insights into lipid-bound nerve growth factors
pubmed doi rcsb
molecule keywords Venom nerve growth factor
molecule tags Hormone
total genus 15
structure length 108
sequence length 108
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-03-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00243 NGF Nerve growth factor family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.90.10 Mainly Beta Ribbon Cystine Knot Cytokines, subunit B Cystine-knot cytokines 4ec7A00
3V6BA 2X1WA 1TZIV 1HRPB 4LXRJ 2ARPA 1REWA 1BTGA 2XACA 1WQ9B 2FJGV 2XV7A 1TGKA 5HHDA 1XWDB 5F3BC 1DZ7A 4MQWA 1LX5A 3V2AA 3IJ2A 1HCNB 1B98A 5BQEA 5FV2V 2TGIA 4EC7A 5HK5E 4QAFC 3S1KV 2GYRA 5BQCA 3KFDA 1SG1A 4AY9B 1KATW 1TFGA 1FLTV 4QCIC 1M4UA 4HQUA 1MKGA 5BPUA 4UI1A 2QJ9A 5HI3A 1FZVA 5HHCA 1SGFB 4HR9A 4KZNA 1LXIA 4UI2B 5BQ8B 3HH2A 1QFWB 4UHYA 4ZFFC 4UHZA 1AGQA 5BQBA 5HHVA 1HCFA 1VPPV 4GLSE 4UI0A 3EO1C 1E9JA 1ES7A 1KLCA 4GLNE 1FL7B 1BNDA 1CZ8V 3MJGA 1WAQA 1TGJA 1JPYA 2ARVA 1NYSB 1WWWV 2KD3A 5F3HI 2QCWA 1M4UL 2H62A 2R53A 4MIDA 5HI4A 5E4GA 1HRPA 5JZ7A 1VPFA 2GYZA 5HI5A 1WQ9A 1BJ1V 2VPFA 1XWDA 4WPBA 3BMPA 3S1BV 4YCGC 2GNNA 1B8KA 1AOCA 4BV4L 2C7WA 2IFGE 1TZHV 1MKKA 2GOOA 3E07A 1MJVA 4MQWB 3P9WA 5BQEB 3MJKA 4AY9A 1WQ8A 3FUBB 3QTKA 2PJYA 4EDXV 2ASKA 2P6AA 2VXSA 1RV6V 4YCIC 4LXSJ 3SEKB 5BQ8D 2VWEA 3RJRA 3EVSB 1NYUB 4KXZA 1BETA 2QJAA 1B8MA 1KLAA 1QFWA 5HHXA 1NT3A 4EAXA 4QHUC 4EFVA 4N1DA 5HK5A 4FAOA 4ZBNA 5AEJA 1S4YB 3JVFA 3QB4A 5FV1V 1FL7A 2FJHV 1HCNA 1ZKZA 2GH0C 3BUKA 1QTYR 1REUA 2R52A 2BHKA 2X1XE 3B4VA 1BNDB 4HSAA 3BDYV 1PDGA 2QR0C 1KTZA 2B0UA 1BMPA 1HD4A 2QJBA 3BK3A 4MPLA 4XPJA 2V5EB 4KV5A 4EDWV 4HQXA 2QCQA 4X1JA 2H64A 1B8MB 5BQ8A
chains in the Genus database with same CATH superfamily
3V6BA 2X1WA 1TZIV 1HRPB 4LXRJ 2ARPA 1REWA 1BTGA 2XACA 1WQ9B 2FJGV 2XV7A 1TGKA 5HHDA 1XWDB 5F3BC 1DZ7A 4MQWA 1LX5A 3V2AA 3IJ2A 1HCNB 1B98A 5BQEA 5FV2V 2TGIA 4EC7A 5HK5E 4QAFC 3S1KV 2GYRA 5BQCA 3KFDA 1SG1A 4AY9B 1KATW 1TFGA 1FLTV 4QCIC 1M4UA 4HQUA 1MKGA 5BPUA 4UI1A 2QJ9A 5HI3A 1FZVA 5HHCA 1SGFB 4HR9A 4KZNA 1LXIA 4UI2B 5BQ8B 3HH2A 1QFWB 4UHYA 4ZFFC 4UHZA 1AGQA 5BQBA 5HHVA 1HCFA 1VPPV 4GLSE 4UI0A 3EO1C 1E9JA 1ES7A 1KLCA 4GLNE 1FL7B 1BNDA 1CZ8V 3MJGA 1WAQA 1TGJA 1JPYA 2ARVA 1NYSB 1WWWV 2KD3A 5F3HI 2QCWA 1M4UL 2H62A 2R53A 4MIDA 5HI4A 5E4GA 1HRPA 5JZ7A 1VPFA 2GYZA 5HI5A 1WQ9A 1BJ1V 2VPFA 1XWDA 4WPBA 3BMPA 3S1BV 4YCGC 2GNNA 1B8KA 1AOCA 4BV4L 2C7WA 2IFGE 1TZHV 1MKKA 2GOOA 3E07A 1MJVA 4MQWB 3P9WA 5BQEB 3MJKA 4AY9A 1WQ8A 3FUBB 3QTKA 2PJYA 4EDXV 2ASKA 2P6AA 2VXSA 1RV6V 4YCIC 4LXSJ 3SEKB 5BQ8D 2VWEA 3RJRA 3EVSB 1NYUB 4KXZA 1BETA 2QJAA 1B8MA 1KLAA 1QFWA 5HHXA 1NT3A 4EAXA 4QHUC 4EFVA 4N1DA 5HK5A 4FAOA 4ZBNA 5AEJA 1S4YB 3JVFA 3QB4A 5FV1V 1FL7A 2FJHV 1HCNA 1ZKZA 2GH0C 3BUKA 1QTYR 1REUA 2R52A 2BHKA 2X1XE 3B4VA 1BNDB 4HSAA 3BDYV 1PDGA 2QR0C 1KTZA 2B0UA 1BMPA 1HD4A 2QJBA 3BK3A 4MPLA 4XPJA 2V5EB 4KV5A 4EDWV 4HQXA 2QCQA 4X1JA 2H64A 1B8MB 5BQ8A
chains in the Genus database with same CATH topology
3V6BA 2X1WA 1TZIV 1HRPB 4LXRJ 2ARPA 1REWA 1BTGA 2XACA 1WQ9B 2FJGV 2XV7A 1TGKA 5HHDA 1XWDB 5F3BC 1DZ7A 4MQWA 1LX5A 3V2AA 3IJ2A 1HCNB 1B98A 5BQEA 5FV2V 2TGIA 4EC7A 5HK5E 4QAFC 3S1KV 2GYRA 5BQCA 3KFDA 1SG1A 4AY9B 1KATW 1TFGA 1FLTV 4QCIC 1M4UA 4HQUA 1MKGA 5BPUA 4UI1A 2QJ9A 5HI3A 1FZVA 5HHCA 1SGFB 4HR9A 4KZNA 1LXIA 4UI2B 5BQ8B 3HH2A 1QFWB 4UHYA 4ZFFC 4UHZA 1AGQA 5BQBA 5HHVA 1HCFA 1VPPV 4GLSE 4UI0A 3EO1C 1E9JA 1ES7A 1KLCA 4GLNE 1FL7B 1BNDA 1CZ8V 3MJGA 1WAQA 1TGJA 1JPYA 2ARVA 1NYSB 1WWWV 2KD3A 5F3HI 2QCWA 1M4UL 2H62A 2R53A 4MIDA 5HI4A 5E4GA 1HRPA 5JZ7A 1VPFA 2GYZA 5HI5A 1WQ9A 1BJ1V 2VPFA 1XWDA 4WPBA 3BMPA 3S1BV 4YCGC 2GNNA 1B8KA 1AOCA 4BV4L 2C7WA 2IFGE 1TZHV 1MKKA 2GOOA 3E07A 1MJVA 4MQWB 3P9WA 5BQEB 3MJKA 4AY9A 1WQ8A 3FUBB 3QTKA 2PJYA 4EDXV 2ASKA 2P6AA 2VXSA 1RV6V 4YCIC 4LXSJ 3SEKB 5BQ8D 2VWEA 3RJRA 3EVSB 1NYUB 4KXZA 1BETA 2QJAA 1B8MA 1KLAA 1QFWA 5HHXA 1NT3A 4EAXA 4QHUC 4EFVA 4N1DA 5HK5A 4FAOA 4ZBNA 5AEJA 1S4YB 3JVFA 3QB4A 5FV1V 1FL7A 2FJHV 1HCNA 1ZKZA 2GH0C 3BUKA 1QTYR 1REUA 2R52A 2BHKA 2X1XE 3B4VA 1BNDB 4HSAA 3BDYV 1PDGA 2QR0C 1KTZA 2B0UA 1BMPA 1HD4A 2QJBA 3BK3A 4MPLA 4XPJA 2V5EB 4KV5A 4EDWV 4HQXA 2QCQA 4X1JA 2H64A 1B8MB 5BQ8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3V6B A;  2X1W A;  1TZI V;  1HRP B;  4LXR J;  2ARP A;  1REW A;  1BTG A;  2XAC A;  1WQ9 B;  2FJG V;  2XV7 A;  1TGK A;  5HHD A;  1XWD B;  5F3B C;  1DZ7 A;  4MQW A;  1LX5 A;  3V2A A;  3IJ2 A;  1HCN B;  1B98 A;  5BQE A;  5FV2 V;  2TGI A;  4EC7 A;  5HK5 E;  4QAF C;  3S1K V;  2GYR A;  5BQC A;  3KFD A;  1SG1 A;  4AY9 B;  1KAT W;  1TFG A;  1FLT V;  4QCI C;  1M4U A;  4HQU A;  1MKG A;  5BPU A;  4UI1 A;  2QJ9 A;  5HI3 A;  1FZV A;  5HHC A;  1SGF B;  4HR9 A;  4KZN A;  1LXI A;  4UI2 B;  5BQ8 B;  3HH2 A;  1QFW B;  4UHY A;  4ZFF C;  4UHZ A;  1AGQ A;  5BQB A;  5HHV A;  1HCF A;  1VPP V;  4GLS E;  4UI0 A;  3EO1 C;  1E9J A;  1ES7 A;  1KLC A;  4GLN E;  1FL7 B;  1BND A;  1CZ8 V;  3MJG A;  1WAQ A;  1TGJ A;  1JPY A;  2ARV A;  1NYS B;  1WWW V;  2KD3 A;  5F3H I;  2QCW A;  1M4U L;  2H62 A;  2R53 A;  4MID A;  5HI4 A;  5E4G A;  1HRP A;  5JZ7 A;  1VPF A;  2GYZ A;  5HI5 A;  1WQ9 A;  1BJ1 V;  2VPF A;  1XWD A;  4WPB A;  3BMP A;  3S1B V;  4YCG C;  2GNN A;  1B8K A;  1AOC A;  4BV4 L;  2C7W A;  2IFG E;  1TZH V;  1MKK A;  2GOO A;  3E07 A;  1MJV A;  4MQW B;  3P9W A;  5BQE B;  3MJK A;  4AY9 A;  1WQ8 A;  3FUB B;  3QTK A;  2PJY A;  4EDX V;  2ASK A;  2P6A A;  2VXS A;  1RV6 V;  4YCI C;  4LXS J;  3SEK B;  5BQ8 D;  2VWE A;  3RJR A;  3EVS B;  1NYU B;  4KXZ A;  1BET A;  2QJA A;  1B8M A;  1KLA A;  1QFW A;  5HHX A;  1NT3 A;  4EAX A;  4QHU C;  4EFV A;  4N1D A;  5HK5 A;  4FAO A;  4ZBN A;  5AEJ A;  1S4Y B;  3JVF A;  3QB4 A;  5FV1 V;  1FL7 A;  2FJH V;  1HCN A;  1ZKZ A;  2GH0 C;  3BUK A;  1QTY R;  1REU A;  2R52 A;  2BHK A;  2X1X E;  3B4V A;  1BND B;  4HSA A;  3BDY V;  1PDG A;  2QR0 C;  1KTZ A;  2B0U A;  1BMP A;  1HD4 A;  2QJB A;  3BK3 A;  4MPL A;  4XPJ A;  2V5E B;  4KV5 A;  4EDW V;  4HQX A;  2QCQ A;  4X1J A;  2H64 A;  1B8M B;  5BQ8 A; 
#chains in the Genus database with same CATH topology
 3V6B A;  2X1W A;  1TZI V;  1HRP B;  4LXR J;  2ARP A;  1REW A;  1BTG A;  2XAC A;  1WQ9 B;  2FJG V;  2XV7 A;  1TGK A;  5HHD A;  1XWD B;  5F3B C;  1DZ7 A;  4MQW A;  1LX5 A;  3V2A A;  3IJ2 A;  1HCN B;  1B98 A;  5BQE A;  5FV2 V;  2TGI A;  4EC7 A;  5HK5 E;  4QAF C;  3S1K V;  2GYR A;  5BQC A;  3KFD A;  1SG1 A;  4AY9 B;  1KAT W;  1TFG A;  1FLT V;  4QCI C;  1M4U A;  4HQU A;  1MKG A;  5BPU A;  4UI1 A;  2QJ9 A;  5HI3 A;  1FZV A;  5HHC A;  1SGF B;  4HR9 A;  4KZN A;  1LXI A;  4UI2 B;  5BQ8 B;  3HH2 A;  1QFW B;  4UHY A;  4ZFF C;  4UHZ A;  1AGQ A;  5BQB A;  5HHV A;  1HCF A;  1VPP V;  4GLS E;  4UI0 A;  3EO1 C;  1E9J A;  1ES7 A;  1KLC A;  4GLN E;  1FL7 B;  1BND A;  1CZ8 V;  3MJG A;  1WAQ A;  1TGJ A;  1JPY A;  2ARV A;  1NYS B;  1WWW V;  2KD3 A;  5F3H I;  2QCW A;  1M4U L;  2H62 A;  2R53 A;  4MID A;  5HI4 A;  5E4G A;  1HRP A;  5JZ7 A;  1VPF A;  2GYZ A;  5HI5 A;  1WQ9 A;  1BJ1 V;  2VPF A;  1XWD A;  4WPB A;  3BMP A;  3S1B V;  4YCG C;  2GNN A;  1B8K A;  1AOC A;  4BV4 L;  2C7W A;  2IFG E;  1TZH V;  1MKK A;  2GOO A;  3E07 A;  1MJV A;  4MQW B;  3P9W A;  5BQE B;  3MJK A;  4AY9 A;  1WQ8 A;  3FUB B;  3QTK A;  2PJY A;  4EDX V;  2ASK A;  2P6A A;  2VXS A;  1RV6 V;  4YCI C;  4LXS J;  3SEK B;  5BQ8 D;  2VWE A;  3RJR A;  3EVS B;  1NYU B;  4KXZ A;  1BET A;  2QJA A;  1B8M A;  1KLA A;  1QFW A;  5HHX A;  1NT3 A;  4EAX A;  4QHU C;  4EFV A;  4N1D A;  5HK5 A;  4FAO A;  4ZBN A;  5AEJ A;  1S4Y B;  3JVF A;  3QB4 A;  5FV1 V;  1FL7 A;  2FJH V;  1HCN A;  1ZKZ A;  2GH0 C;  3BUK A;  1QTY R;  1REU A;  2R52 A;  2BHK A;  2X1X E;  3B4V A;  1BND B;  4HSA A;  3BDY V;  1PDG A;  2QR0 C;  1KTZ A;  2B0U A;  1BMP A;  1HD4 A;  2QJB A;  3BK3 A;  4MPL A;  4XPJ A;  2V5E B;  4KV5 A;  4EDW V;  4HQX A;  2QCQ A;  4X1J A;  2H64 A;  1B8M B;  5BQ8 A; 
#chains in the Genus database with same CATH homology
 3V6B A;  2X1W A;  1TZI V;  1HRP B;  4LXR J;  2ARP A;  1REW A;  1BTG A;  2XAC A;  1WQ9 B;  2FJG V;  2XV7 A;  1TGK A;  5HHD A;  1XWD B;  5F3B C;  1DZ7 A;  4MQW A;  1LX5 A;  3V2A A;  3IJ2 A;  1HCN B;  1B98 A;  5BQE A;  5FV2 V;  2TGI A;  4EC7 A;  5HK5 E;  4QAF C;  3S1K V;  2GYR A;  5BQC A;  3KFD A;  1SG1 A;  4AY9 B;  1KAT W;  1TFG A;  1FLT V;  4QCI C;  1M4U A;  4HQU A;  1MKG A;  5BPU A;  4UI1 A;  2QJ9 A;  5HI3 A;  1FZV A;  5HHC A;  1SGF B;  4HR9 A;  4KZN A;  1LXI A;  4UI2 B;  5BQ8 B;  3HH2 A;  1QFW B;  4UHY A;  4ZFF C;  4UHZ A;  1AGQ A;  5BQB A;  5HHV A;  1HCF A;  1VPP V;  4GLS E;  4UI0 A;  3EO1 C;  1E9J A;  1ES7 A;  1KLC A;  4GLN E;  1FL7 B;  1BND A;  1CZ8 V;  3MJG A;  1WAQ A;  1TGJ A;  1JPY A;  2ARV A;  1NYS B;  1WWW V;  2KD3 A;  5F3H I;  2QCW A;  1M4U L;  2H62 A;  2R53 A;  4MID A;  5HI4 A;  5E4G A;  1HRP A;  5JZ7 A;  1VPF A;  2GYZ A;  5HI5 A;  1WQ9 A;  1BJ1 V;  2VPF A;  1XWD A;  4WPB A;  3BMP A;  3S1B V;  4YCG C;  2GNN A;  1B8K A;  1AOC A;  4BV4 L;  2C7W A;  2IFG E;  1TZH V;  1MKK A;  2GOO A;  3E07 A;  1MJV A;  4MQW B;  3P9W A;  5BQE B;  3MJK A;  4AY9 A;  1WQ8 A;  3FUB B;  3QTK A;  2PJY A;  4EDX V;  2ASK A;  2P6A A;  2VXS A;  1RV6 V;  4YCI C;  4LXS J;  3SEK B;  5BQ8 D;  2VWE A;  3RJR A;  3EVS B;  1NYU B;  4KXZ A;  1BET A;  2QJA A;  1B8M A;  1KLA A;  1QFW A;  5HHX A;  1NT3 A;  4EAX A;  4QHU C;  4EFV A;  4N1D A;  5HK5 A;  4FAO A;  4ZBN A;  5AEJ A;  1S4Y B;  3JVF A;  3QB4 A;  5FV1 V;  1FL7 A;  2FJH V;  1HCN A;  1ZKZ A;  2GH0 C;  3BUK A;  1QTY R;  1REU A;  2R52 A;  2BHK A;  2X1X E;  3B4V A;  1BND B;  4HSA A;  3BDY V;  1PDG A;  2QR0 C;  1KTZ A;  2B0U A;  1BMP A;  1HD4 A;  2QJB A;  3BK3 A;  4MPL A;  4XPJ A;  2V5E B;  4KV5 A;  4EDW V;  4HQX A;  2QCQ A;  4X1J A;  2H64 A;  1B8M B;  5BQ8 A; 
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