4UI0A

Crystal structure of the human rgmb-bmp2 complex, crystal form 2
Total Genus 14

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
104
structure length
101
Chain Sequence
KSSCKRHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPHLNSTNHAIVQTLVNSVNSKIPKACCVPTELSAISMLYLDENEKVVLKNYQDMVVEGCGCR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYO10 (82-121)O8 (54-99)Updating...
connected with : NaN
publication title Repulsive Guidance Molecule is a Structural Bridge between Neogenin and Bone Morphogenetic Protein.
pubmed doi rcsb
molecule keywords BONE MORPHOGENETIC PROTEIN 2
molecule tags Signaling protein
source organism Homo sapiens
total genus 14
structure length 101
sequence length 104
chains with identical sequence B
ec nomenclature
pdb deposition date 2015-03-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00019 TGF_beta Transforming growth factor beta like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.90.10 Mainly Beta Ribbon Cystine Knot Cytokines, subunit B Cystine-knot cytokines 4ui0A00
5JZ7A 1MJVA 4ZFFC 3V6BA 4KXZA 4AY9A 1M4UL 1B8MB 2V5EB 3RJRA 1B8KA 1TGKA 1KATW 1QFWB 1VPFA 1QTYR 4UI2B 4EC7A 4AY9B 4N1DA 2GNNA 1MKGA 2QR0C 1TFGA 1RV6V 1HCFA 3FUBB 2VWEA 4UHYA 4EDWV 1TGJA 3IJ2A 2H62A 5BQ8A 5HI4A 3MJKA 2QCWA 4ZBNA 1HD4A 1XWDA 2VXSA 5HK5E 1LX5A 3EVSB 2ARVA 5HI5A 2QJ9A 1CZ8V 1SGFB 5BQ8B 4YCGC 2VPFA 1FL7A 1TZHV 1DZ7A 2PJYA 1E9JA 1XWDB 5AEJA 4EAXA 5BPUA 5HHVA 4QHUC 1WAQA 1PDGA 4EDXV 1TZIV 2X1XE 4LXSJ 2QCQA 3MJGA 5BQ8D 1FL7B 1M4UA 2FJHV 2BHKA 2XACA 1WQ8A 2GOOA 5BQCA 1JPYA 1ES7A 5HHDA 3JVFA 4XPJA 2QJAA 4MIDA 2FJGV 2KD3A 5HI3A 1FLTV 1B98A 4X1JA 4QCIC 1WQ9A 1ZKZA 1SG1A 1BJ1V 1BTGA 1HCNA 1S4YB 2GYZA 4YCIC 5FV1V 4KZNA 2QJBA 1FZVA 4BV4L 1LXIA 1WQ9B 5E4GA 4LXRJ 4FAOA 1HCNB 3KFDA 5HK5A 5HHXA 5BQBA 3S1KV 3S1BV 1AGQA 3P9WA 1BETA 1NYUB 2IFGE 2P6AA 2GYRA 2R52A 1KLAA 3SEKB 2ASKA 3V2AA 4EFVA 4UI0A 4WPBA 1REUA 1BMPA 5F3HI 5FV2V 2GH0C 2X1WA 5BQEA 3BDYV 3HH2A 1AOCA 1BNDA 4GLNE 4KV5A 2ARPA 4HQUA 1NYSB 2XV7A 2TGIA 4UI1A 2B0UA 3BUKA 1MKKA 2R53A 4MQWA 4QAFC 3EO1C 5BQEB 4UHZA 2H64A 1HRPA 3BMPA 4HSAA 5HHCA 1BNDB 1KLCA 3B4VA 4MPLA 3BK3A 1REWA 4MQWB 5F3BC 4HR9A 3QB4A 4GLSE 3QTKA 1VPPV 1HRPB 1WWWV 3E07A 4HQXA 2C7WA 1B8MA 1KTZA 1NT3A 1QFWA
chains in the Genus database with same CATH superfamily
5JZ7A 1MJVA 4ZFFC 3V6BA 4KXZA 4AY9A 1M4UL 1B8MB 2V5EB 3RJRA 1B8KA 1TGKA 1KATW 1QFWB 1VPFA 1QTYR 4UI2B 4EC7A 4AY9B 4N1DA 2GNNA 1MKGA 2QR0C 1TFGA 1RV6V 1HCFA 3FUBB 2VWEA 4UHYA 4EDWV 1TGJA 3IJ2A 2H62A 5BQ8A 5HI4A 3MJKA 2QCWA 4ZBNA 1HD4A 1XWDA 2VXSA 5HK5E 1LX5A 3EVSB 2ARVA 5HI5A 2QJ9A 1CZ8V 1SGFB 5BQ8B 4YCGC 2VPFA 1FL7A 1TZHV 1DZ7A 2PJYA 1E9JA 1XWDB 5AEJA 4EAXA 5BPUA 5HHVA 4QHUC 1WAQA 1PDGA 4EDXV 1TZIV 2X1XE 4LXSJ 2QCQA 3MJGA 5BQ8D 1FL7B 1M4UA 2FJHV 2BHKA 2XACA 1WQ8A 2GOOA 5BQCA 1JPYA 1ES7A 5HHDA 3JVFA 4XPJA 2QJAA 4MIDA 2FJGV 2KD3A 5HI3A 1FLTV 1B98A 4X1JA 4QCIC 1WQ9A 1ZKZA 1SG1A 1BJ1V 1BTGA 1HCNA 1S4YB 2GYZA 4YCIC 5FV1V 4KZNA 2QJBA 1FZVA 4BV4L 1LXIA 1WQ9B 5E4GA 4LXRJ 4FAOA 1HCNB 3KFDA 5HK5A 5HHXA 5BQBA 3S1KV 3S1BV 1AGQA 3P9WA 1BETA 1NYUB 2IFGE 2P6AA 2GYRA 2R52A 1KLAA 3SEKB 2ASKA 3V2AA 4EFVA 4UI0A 4WPBA 1REUA 1BMPA 5F3HI 5FV2V 2GH0C 2X1WA 5BQEA 3BDYV 3HH2A 1AOCA 1BNDA 4GLNE 4KV5A 2ARPA 4HQUA 1NYSB 2XV7A 2TGIA 4UI1A 2B0UA 3BUKA 1MKKA 2R53A 4MQWA 4QAFC 3EO1C 5BQEB 4UHZA 2H64A 1HRPA 3BMPA 4HSAA 5HHCA 1BNDB 1KLCA 3B4VA 4MPLA 3BK3A 1REWA 4MQWB 5F3BC 4HR9A 3QB4A 4GLSE 3QTKA 1VPPV 1HRPB 1WWWV 3E07A 4HQXA 2C7WA 1B8MA 1KTZA 1NT3A 1QFWA
chains in the Genus database with same CATH topology
5JZ7A 1MJVA 4ZFFC 3V6BA 4KXZA 4AY9A 1M4UL 1B8MB 2V5EB 3RJRA 1B8KA 1TGKA 1KATW 1QFWB 1VPFA 1QTYR 4UI2B 4EC7A 4AY9B 4N1DA 2GNNA 1MKGA 2QR0C 1TFGA 1RV6V 1HCFA 3FUBB 2VWEA 4UHYA 4EDWV 1TGJA 3IJ2A 2H62A 5BQ8A 5HI4A 3MJKA 2QCWA 4ZBNA 1HD4A 1XWDA 2VXSA 5HK5E 1LX5A 3EVSB 2ARVA 5HI5A 2QJ9A 1CZ8V 1SGFB 5BQ8B 4YCGC 2VPFA 1FL7A 1TZHV 1DZ7A 2PJYA 1E9JA 1XWDB 5AEJA 4EAXA 5BPUA 5HHVA 4QHUC 1WAQA 1PDGA 4EDXV 1TZIV 2X1XE 4LXSJ 2QCQA 3MJGA 5BQ8D 1FL7B 1M4UA 2FJHV 2BHKA 2XACA 1WQ8A 2GOOA 5BQCA 1JPYA 1ES7A 5HHDA 3JVFA 4XPJA 2QJAA 4MIDA 2FJGV 2KD3A 5HI3A 1FLTV 1B98A 4X1JA 4QCIC 1WQ9A 1ZKZA 1SG1A 1BJ1V 1BTGA 1HCNA 1S4YB 2GYZA 4YCIC 5FV1V 4KZNA 2QJBA 1FZVA 4BV4L 1LXIA 1WQ9B 5E4GA 4LXRJ 4FAOA 1HCNB 3KFDA 5HK5A 5HHXA 5BQBA 3S1KV 3S1BV 1AGQA 3P9WA 1BETA 1NYUB 2IFGE 2P6AA 2GYRA 2R52A 1KLAA 3SEKB 2ASKA 3V2AA 4EFVA 4UI0A 4WPBA 1REUA 1BMPA 5F3HI 5FV2V 2GH0C 2X1WA 5BQEA 3BDYV 3HH2A 1AOCA 1BNDA 4GLNE 4KV5A 2ARPA 4HQUA 1NYSB 2XV7A 2TGIA 4UI1A 2B0UA 3BUKA 1MKKA 2R53A 4MQWA 4QAFC 3EO1C 5BQEB 4UHZA 2H64A 1HRPA 3BMPA 4HSAA 5HHCA 1BNDB 1KLCA 3B4VA 4MPLA 3BK3A 1REWA 4MQWB 5F3BC 4HR9A 3QB4A 4GLSE 3QTKA 1VPPV 1HRPB 1WWWV 3E07A 4HQXA 2C7WA 1B8MA 1KTZA 1NT3A 1QFWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5JZ7 A;  1MJV A;  4ZFF C;  3V6B A;  4KXZ A;  4AY9 A;  1M4U L;  1B8M B;  2V5E B;  3RJR A;  1B8K A;  1TGK A;  1KAT W;  1QFW B;  1VPF A;  1QTY R;  4UI2 B;  4EC7 A;  4AY9 B;  4N1D A;  2GNN A;  1MKG A;  2QR0 C;  1TFG A;  1RV6 V;  1HCF A;  3FUB B;  2VWE A;  4UHY A;  4EDW V;  1TGJ A;  3IJ2 A;  2H62 A;  5BQ8 A;  5HI4 A;  3MJK A;  2QCW A;  4ZBN A;  1HD4 A;  1XWD A;  2VXS A;  5HK5 E;  1LX5 A;  3EVS B;  2ARV A;  5HI5 A;  2QJ9 A;  1CZ8 V;  1SGF B;  5BQ8 B;  4YCG C;  2VPF A;  1FL7 A;  1TZH V;  1DZ7 A;  2PJY A;  1E9J A;  1XWD B;  5AEJ A;  4EAX A;  5BPU A;  5HHV A;  4QHU C;  1WAQ A;  1PDG A;  4EDX V;  1TZI V;  2X1X E;  4LXS J;  2QCQ A;  3MJG A;  5BQ8 D;  1FL7 B;  1M4U A;  2FJH V;  2BHK A;  2XAC A;  1WQ8 A;  2GOO A;  5BQC A;  1JPY A;  1ES7 A;  5HHD A;  3JVF A;  4XPJ A;  2QJA A;  4MID A;  2FJG V;  2KD3 A;  5HI3 A;  1FLT V;  1B98 A;  4X1J A;  4QCI C;  1WQ9 A;  1ZKZ A;  1SG1 A;  1BJ1 V;  1BTG A;  1HCN A;  1S4Y B;  2GYZ A;  4YCI C;  5FV1 V;  4KZN A;  2QJB A;  1FZV A;  4BV4 L;  1LXI A;  1WQ9 B;  5E4G A;  4LXR J;  4FAO A;  1HCN B;  3KFD A;  5HK5 A;  5HHX A;  5BQB A;  3S1K V;  3S1B V;  1AGQ A;  3P9W A;  1BET A;  1NYU B;  2IFG E;  2P6A A;  2GYR A;  2R52 A;  1KLA A;  3SEK B;  2ASK A;  3V2A A;  4EFV A;  4UI0 A;  4WPB A;  1REU A;  1BMP A;  5F3H I;  5FV2 V;  2GH0 C;  2X1W A;  5BQE A;  3BDY V;  3HH2 A;  1AOC A;  1BND A;  4GLN E;  4KV5 A;  2ARP A;  4HQU A;  1NYS B;  2XV7 A;  2TGI A;  4UI1 A;  2B0U A;  3BUK A;  1MKK A;  2R53 A;  4MQW A;  4QAF C;  3EO1 C;  5BQE B;  4UHZ A;  2H64 A;  1HRP A;  3BMP A;  4HSA A;  5HHC A;  1BND B;  1KLC A;  3B4V A;  4MPL A;  3BK3 A;  1REW A;  4MQW B;  5F3B C;  4HR9 A;  3QB4 A;  4GLS E;  3QTK A;  1VPP V;  1HRP B;  1WWW V;  3E07 A;  4HQX A;  2C7W A;  1B8M A;  1KTZ A;  1NT3 A;  1QFW A; 
#chains in the Genus database with same CATH topology
 5JZ7 A;  1MJV A;  4ZFF C;  3V6B A;  4KXZ A;  4AY9 A;  1M4U L;  1B8M B;  2V5E B;  3RJR A;  1B8K A;  1TGK A;  1KAT W;  1QFW B;  1VPF A;  1QTY R;  4UI2 B;  4EC7 A;  4AY9 B;  4N1D A;  2GNN A;  1MKG A;  2QR0 C;  1TFG A;  1RV6 V;  1HCF A;  3FUB B;  2VWE A;  4UHY A;  4EDW V;  1TGJ A;  3IJ2 A;  2H62 A;  5BQ8 A;  5HI4 A;  3MJK A;  2QCW A;  4ZBN A;  1HD4 A;  1XWD A;  2VXS A;  5HK5 E;  1LX5 A;  3EVS B;  2ARV A;  5HI5 A;  2QJ9 A;  1CZ8 V;  1SGF B;  5BQ8 B;  4YCG C;  2VPF A;  1FL7 A;  1TZH V;  1DZ7 A;  2PJY A;  1E9J A;  1XWD B;  5AEJ A;  4EAX A;  5BPU A;  5HHV A;  4QHU C;  1WAQ A;  1PDG A;  4EDX V;  1TZI V;  2X1X E;  4LXS J;  2QCQ A;  3MJG A;  5BQ8 D;  1FL7 B;  1M4U A;  2FJH V;  2BHK A;  2XAC A;  1WQ8 A;  2GOO A;  5BQC A;  1JPY A;  1ES7 A;  5HHD A;  3JVF A;  4XPJ A;  2QJA A;  4MID A;  2FJG V;  2KD3 A;  5HI3 A;  1FLT V;  1B98 A;  4X1J A;  4QCI C;  1WQ9 A;  1ZKZ A;  1SG1 A;  1BJ1 V;  1BTG A;  1HCN A;  1S4Y B;  2GYZ A;  4YCI C;  5FV1 V;  4KZN A;  2QJB A;  1FZV A;  4BV4 L;  1LXI A;  1WQ9 B;  5E4G A;  4LXR J;  4FAO A;  1HCN B;  3KFD A;  5HK5 A;  5HHX A;  5BQB A;  3S1K V;  3S1B V;  1AGQ A;  3P9W A;  1BET A;  1NYU B;  2IFG E;  2P6A A;  2GYR A;  2R52 A;  1KLA A;  3SEK B;  2ASK A;  3V2A A;  4EFV A;  4UI0 A;  4WPB A;  1REU A;  1BMP A;  5F3H I;  5FV2 V;  2GH0 C;  2X1W A;  5BQE A;  3BDY V;  3HH2 A;  1AOC A;  1BND A;  4GLN E;  4KV5 A;  2ARP A;  4HQU A;  1NYS B;  2XV7 A;  2TGI A;  4UI1 A;  2B0U A;  3BUK A;  1MKK A;  2R53 A;  4MQW A;  4QAF C;  3EO1 C;  5BQE B;  4UHZ A;  2H64 A;  1HRP A;  3BMP A;  4HSA A;  5HHC A;  1BND B;  1KLC A;  3B4V A;  4MPL A;  3BK3 A;  1REW A;  4MQW B;  5F3B C;  4HR9 A;  3QB4 A;  4GLS E;  3QTK A;  1VPP V;  1HRP B;  1WWW V;  3E07 A;  4HQX A;  2C7W A;  1B8M A;  1KTZ A;  1NT3 A;  1QFW A; 
#chains in the Genus database with same CATH homology
 5JZ7 A;  1MJV A;  4ZFF C;  3V6B A;  4KXZ A;  4AY9 A;  1M4U L;  1B8M B;  2V5E B;  3RJR A;  1B8K A;  1TGK A;  1KAT W;  1QFW B;  1VPF A;  1QTY R;  4UI2 B;  4EC7 A;  4AY9 B;  4N1D A;  2GNN A;  1MKG A;  2QR0 C;  1TFG A;  1RV6 V;  1HCF A;  3FUB B;  2VWE A;  4UHY A;  4EDW V;  1TGJ A;  3IJ2 A;  2H62 A;  5BQ8 A;  5HI4 A;  3MJK A;  2QCW A;  4ZBN A;  1HD4 A;  1XWD A;  2VXS A;  5HK5 E;  1LX5 A;  3EVS B;  2ARV A;  5HI5 A;  2QJ9 A;  1CZ8 V;  1SGF B;  5BQ8 B;  4YCG C;  2VPF A;  1FL7 A;  1TZH V;  1DZ7 A;  2PJY A;  1E9J A;  1XWD B;  5AEJ A;  4EAX A;  5BPU A;  5HHV A;  4QHU C;  1WAQ A;  1PDG A;  4EDX V;  1TZI V;  2X1X E;  4LXS J;  2QCQ A;  3MJG A;  5BQ8 D;  1FL7 B;  1M4U A;  2FJH V;  2BHK A;  2XAC A;  1WQ8 A;  2GOO A;  5BQC A;  1JPY A;  1ES7 A;  5HHD A;  3JVF A;  4XPJ A;  2QJA A;  4MID A;  2FJG V;  2KD3 A;  5HI3 A;  1FLT V;  1B98 A;  4X1J A;  4QCI C;  1WQ9 A;  1ZKZ A;  1SG1 A;  1BJ1 V;  1BTG A;  1HCN A;  1S4Y B;  2GYZ A;  4YCI C;  5FV1 V;  4KZN A;  2QJB A;  1FZV A;  4BV4 L;  1LXI A;  1WQ9 B;  5E4G A;  4LXR J;  4FAO A;  1HCN B;  3KFD A;  5HK5 A;  5HHX A;  5BQB A;  3S1K V;  3S1B V;  1AGQ A;  3P9W A;  1BET A;  1NYU B;  2IFG E;  2P6A A;  2GYR A;  2R52 A;  1KLA A;  3SEK B;  2ASK A;  3V2A A;  4EFV A;  4UI0 A;  4WPB A;  1REU A;  1BMP A;  5F3H I;  5FV2 V;  2GH0 C;  2X1W A;  5BQE A;  3BDY V;  3HH2 A;  1AOC A;  1BND A;  4GLN E;  4KV5 A;  2ARP A;  4HQU A;  1NYS B;  2XV7 A;  2TGI A;  4UI1 A;  2B0U A;  3BUK A;  1MKK A;  2R53 A;  4MQW A;  4QAF C;  3EO1 C;  5BQE B;  4UHZ A;  2H64 A;  1HRP A;  3BMP A;  4HSA A;  5HHC A;  1BND B;  1KLC A;  3B4V A;  4MPL A;  3BK3 A;  1REW A;  4MQW B;  5F3B C;  4HR9 A;  3QB4 A;  4GLS E;  3QTK A;  1VPP V;  1HRP B;  1WWW V;  3E07 A;  4HQX A;  2C7W A;  1B8M A;  1KTZ A;  1NT3 A;  1QFW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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