1EF0A

Crystal structure of pi-scei miniprecursor
Total Genus 117
50100150200250300350400020406080100120
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
117
sequence length
457
structure length
425
Chain Sequence
EGAFAKGTNVLMADGSIECIENIEVGNKVMGKDGRPREVIKLPRGRETMYSVVQKSQHRAHKSDSSREVPELLKFTCNATHELVVRTPRSVRVITFEMGQKKAPDGRIVELVKEVSKSYPISEGPERANELVESYRKASNKAYFEWTIEARDLSLLGSHVRKATYQTYAPILYENDHFFDYMQKSKTIEGPKVLAYLLGLWIGDGLSDRATFSVDSRDTSLMERVTEYAEKLNLCAEYKDRKEPQVAKTVNLYSENPLWDAIVGLGFLKDGVKNIPSFLSTDNIGTRETFLAGLIDSDGYVTDEHGIKATIKTIHTSVRDGLVSLARSLGLVVSVNAEPAKVDGTKHKISYAIYMSGGDVLLNVLSKCAGSKKFRPAPAAAFARECRGFYFELQELKEDDYYGITLSDDSDHQFLLANQVVVHAC
50100150200250300350400400300200100
020406080100Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI2 (76-79)TII1 (3-6)TI6 (400-403)S1 (7-9)S6 (72-76)S23 (417-419)3H1 (18-20)TI1 (10-13)TIV1 (29-32)S3 (25-28)S2 (15-17)TII2 (22-25)S5 (42-52)TVIII1 (148-151)S7 (80-86)AH1 (139-148)3H2 (161-166)S8 (88-89)TIV5 (132-135)S9 (104-113)TIV9 (150-153)S11 (154-160)TI3 (114-117)S10 (119-128)TIV7 (135-138)AH2 (169-174)AH6 (285-293)S19 (327-330)TIV12 (267-284)AH3 (188-195)TI5 (229-232)AH4 (203-218)S15 (251-257)S13 (219-220)TIV15 (370-375)TI4 (220-223)O1 (223-225)S14 (225-229)AH5 (233-245)S16 (261-265)TIV10 (255-258)AH7 (312-325)S22 (379-386)S17 (296-297)TVIII2 (294-297)TIV13 (296-299)S18 (300-301)3H3 (305-309)AH8 (344-357)S21 (360-367)S4 (34-39)AH9 (388-396)S24 (421-432)TIV3 (89-105)TIV14 (331-334)S12 (176-179)O2 (248-250)TIV11 (257-260)TIV6 (134-137)S20 (336-341)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Saccharomyces cerevisiae
publication title Structural insights into the protein splicing mechanism of PI-SceI.
pubmed doi rcsb
molecule keywords PI-SCEI ENDONUCLEASE
total genus 117
structure length 425
sequence length 457
chains with identical sequence B
ec nomenclature ec 7.1.2.2: H(+)-transporting two-sector ATPase.
pdb deposition date 2000-02-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05203 Hom_end_hint Hom_end-associated Hint
A PF05204 Hom_end Homing endonuclease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.16.10 Mainly Beta Beta Complex Endonuclease - Pi-scei; Chain A, domain 1 Hedgehog/Intein (Hint) domain 1ef0A01
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 1ef0A02
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 1ef0A03
4O1RA 5AKNA 3MIPA 1LWSA 3EH8A 4YHXA 2O7MA 5A0WA 4KL5A 4AABA 1N3EA 2EX5A 1UM2A 4AAFA 2IN8A 2DCHX 4UN9G 3HYIA 5A0MB 2JNQA 3QQYA 5K08A 1AF5A 2IN9A 2LCJA 2I3QA 2CW7A 1EF0A 4UN7G 5AK9A 2VBOA 2L8LA 4AAEA 4Z20A 4LOXA 4OZ6A 4Z1XA 5E5SA 4UN8A 2XE0A 1VDEA 3FD2A 3MX9A 2VBJA 2VBLB 2QOJZ 2FLDA 2VBNB 1B24A 1T9IA 2VS8A 1MOWA 1U0CA 3NZMA 4UNAA 1T9JA 3OOLA 1G9YA 3KO2A 2KEQA 3MXBB 1BP7A 4E2TA 4AAGA 5I0AA 1U0DA 5AKMA 4YITA 5A74A 2LQMA 1DFAA 4GIGA 5E67A 5A78A 4UN7A 3HYJA 4AADA 5A0MA 3MXAA 5E63A 1JVAA 1AT0A 1P8KZ 5E5OA 2IMZA 4EFJA 1ZD7A 4UNCA 3MISA 1M5XA 2AB5A 2VBLA 2VS7A 4UN8G 2LWYA 2VBNA 4UN9A 4LQ0A 3IGDA 5AKFA 4D6NA 4AQUA 3MXBA 1ZDEA 1LWTA 1GPPA 2JMZA 1G9ZA 3OORA 3E54A 3C0WA 1R7MA 2VBOB 3IFJA 4UT0A 4AQXA 4UNBA 2I3PA 2XE0B 4KL6A 5A72A 1MI8A 4Z1ZA 5A77A 2VBJB 4E2UA 4D6OA 4YISA 2IN0A 2CW8A 3R7PA 3C0XA 4O1SA 3UVFA 1AM2A 1DQ3A 1N3FA
chains in the Genus database with same CATH superfamily
4O1RA 5AKNA 3MIPA 1LWSA 3EH8A 4YHXA 2O7MA 5A0WA 4KL5A 4AABA 1N3EA 2EX5A 1UM2A 4AAFA 2IN8A 2DCHX 4UN9G 3HYIA 5A0MB 2JNQA 3QQYA 5K08A 1AF5A 2IN9A 2LCJA 2I3QA 2CW7A 1EF0A 4UN7G 5AK9A 2VBOA 2L8LA 4AAEA 4Z20A 4LOXA 4OZ6A 4Z1XA 5E5SA 4UN8A 2XE0A 1VDEA 3FD2A 3MX9A 2VBJA 2VBLB 2QOJZ 2F4LA 2FLDA 2VBNB 1B24A 1T9IA 2VS8A 1MOWA 1U0CA 3NZMA 4UNAA 1T9JA 3OOLA 1G9YA 3KO2A 2KEQA 3MXBB 1BP7A 4E2TA 4AAGA 5I0AA 1U0DA 5AKMA 4YITA 5A74A 2LQMA 1DFAA 4GIGA 5E67A 5A78A 4UN7A 3HYJA 4AADA 5A0MA 3MXAA 5E63A 1JVAA 1AT0A 1P8KZ 5E5OA 2IMZA 4EFJA 1ZD7A 4UNCA 3MISA 1M5XA 4LX3A 2AB5A 2VBLA 2VS7A 4UN8G 4KZSA 2LWYA 2VBNA 4UN9A 4LQ0A 3IGDA 5AKFA 4D6NA 4AQUA 3MXBA 1ZDEA 1LWTA 1GPPA 4QFQA 2JMZA 1G9ZA 3OORA 3E54A 3C0WA 1R7MA 2VBOB 3IFJA 4UT0A 4AQXA 4UNBA 2I3PA 2XE0B 4KL6A 5A72A 1MI8A 4Z1ZA 5A77A 2VBJB 4E2UA 4D6OA 4YISA 2IN0A 2CW8A 3R7PA 3C0XA 4O1SA 3UVFA 1AM2A 1DQ3A 1N3FA
chains in the Genus database with same CATH topology
4O1RA 5AKNA 3MIPA 1LWSA 3EH8A 4YHXA 2O7MA 5A0WA 4KL5A 4AABA 1N3EA 2EX5A 1UM2A 4AAFA 2IN8A 2DCHX 4UN9G 3HYIA 5A0MB 2JNQA 3QQYA 5K08A 1AF5A 2IN9A 2LCJA 2I3QA 2CW7A 1EF0A 4UN7G 5AK9A 2VBOA 2L8LA 4AAEA 4Z20A 4LOXA 4OZ6A 4Z1XA 5E5SA 4UN8A 2XE0A 1VDEA 3FD2A 3MX9A 2VBJA 2VBLB 2QOJZ 2FLDA 2VBNB 1B24A 1T9IA 2VS8A 1MOWA 1U0CA 3NZMA 4UNAA 1T9JA 3OOLA 1G9YA 3KO2A 2KEQA 3MXBB 1BP7A 4E2TA 4AAGA 5I0AA 1U0DA 5AKMA 4YITA 5A74A 2LQMA 1DFAA 4GIGA 5E67A 5A78A 4UN7A 3HYJA 4AADA 5A0MA 3MXAA 5E63A 1JVAA 1AT0A 1P8KZ 5E5OA 2IMZA 4EFJA 1ZD7A 4UNCA 3MISA 1M5XA 2AB5A 2VBLA 2VS7A 4UN8G 2LWYA 2VBNA 4UN9A 4LQ0A 3IGDA 5AKFA 4D6NA 4AQUA 3MXBA 1ZDEA 1LWTA 1GPPA 2JMZA 1G9ZA 3OORA 3E54A 3C0WA 1R7MA 2VBOB 3IFJA 4UT0A 4AQXA 4UNBA 2I3PA 2XE0B 4KL6A 5A72A 1MI8A 4Z1ZA 5A77A 2VBJB 4E2UA 4D6OA 4YISA 2IN0A 2CW8A 3R7PA 3C0XA 4O1SA 3UVFA 1AM2A 1DQ3A 1N3FA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4O1R A;  5AKN A;  3MIP A;  1LWS A;  3EH8 A;  4YHX A;  2O7M A;  5A0W A;  4KL5 A;  4AAB A;  1N3E A;  2EX5 A;  1UM2 A;  4AAF A;  2IN8 A;  2DCH X;  4UN9 G;  3HYI A;  5A0M B;  2JNQ A;  3QQY A;  5K08 A;  1AF5 A;  2IN9 A;  2LCJ A;  2I3Q A;  2CW7 A;  1EF0 A;  4UN7 G;  5AK9 A;  2VBO A;  2L8L A;  4AAE A;  4Z20 A;  4LOX A;  4OZ6 A;  4Z1X A;  5E5S A;  4UN8 A;  2XE0 A;  1VDE A;  3FD2 A;  3MX9 A;  2VBJ A;  2VBL B;  2QOJ Z;  2FLD A;  2VBN B;  1B24 A;  1T9I A;  2VS8 A;  1MOW A;  1U0C A;  3NZM A;  4UNA A;  1T9J A;  3OOL A;  1G9Y A;  3KO2 A;  2KEQ A;  3MXB B;  1BP7 A;  4E2T A;  4AAG A;  5I0A A;  1U0D A;  5AKM A;  4YIT A;  5A74 A;  2LQM A;  1DFA A;  4GIG A;  5E67 A;  5A78 A;  4UN7 A;  3HYJ A;  4AAD A;  5A0M A;  3MXA A;  5E63 A;  1JVA A;  1AT0 A;  1P8K Z;  5E5O A;  2IMZ A;  4EFJ A;  1ZD7 A;  4UNC A;  3MIS A;  1M5X A;  2AB5 A;  2VBL A;  2VS7 A;  4UN8 G;  2LWY A;  2VBN A;  4UN9 A;  4LQ0 A;  3IGD A;  5AKF A;  4D6N A;  4AQU A;  3MXB A;  1ZDE A;  1LWT A;  1GPP A;  2JMZ A;  1G9Z A;  3OOR A;  3E54 A;  3C0W A;  1R7M A;  2VBO B;  3IFJ A;  4UT0 A;  4AQX A;  4UNB A;  2I3P A;  2XE0 B;  4KL6 A;  5A72 A;  1MI8 A;  4Z1Z A;  5A77 A;  2VBJ B;  4E2U A;  4D6O A;  4YIS A;  2IN0 A;  2CW8 A;  3R7P A;  3C0X A;  4O1S A;  3UVF A;  1AM2 A;  1DQ3 A;  1N3F A; 
#chains in the Genus database with same CATH topology
 4O1R A;  5AKN A;  3MIP A;  1LWS A;  3EH8 A;  4YHX A;  2O7M A;  5A0W A;  4KL5 A;  4AAB A;  1N3E A;  2EX5 A;  1UM2 A;  4AAF A;  2IN8 A;  2DCH X;  4UN9 G;  3HYI A;  5A0M B;  2JNQ A;  3QQY A;  5K08 A;  1AF5 A;  2IN9 A;  2LCJ A;  2I3Q A;  2CW7 A;  1EF0 A;  4UN7 G;  5AK9 A;  2VBO A;  2L8L A;  4AAE A;  4Z20 A;  4LOX A;  4OZ6 A;  4Z1X A;  5E5S A;  4UN8 A;  2XE0 A;  1VDE A;  3FD2 A;  3MX9 A;  2VBJ A;  2VBL B;  2QOJ Z;  2F4L A;  2FLD A;  2VBN B;  1B24 A;  1T9I A;  2VS8 A;  1MOW A;  1U0C A;  3NZM A;  4UNA A;  1T9J A;  3OOL A;  1G9Y A;  3KO2 A;  2KEQ A;  3MXB B;  1BP7 A;  4E2T A;  4AAG A;  5I0A A;  1U0D A;  5AKM A;  4YIT A;  5A74 A;  2LQM A;  1DFA A;  4GIG A;  5E67 A;  5A78 A;  4UN7 A;  3HYJ A;  4AAD A;  5A0M A;  3MXA A;  5E63 A;  1JVA A;  1AT0 A;  1P8K Z;  5E5O A;  2IMZ A;  4EFJ A;  1ZD7 A;  4UNC A;  3MIS A;  1M5X A;  4LX3 A;  2AB5 A;  2VBL A;  2VS7 A;  4UN8 G;  4KZS A;  2LWY A;  2VBN A;  4UN9 A;  4LQ0 A;  3IGD A;  5AKF A;  4D6N A;  4AQU A;  3MXB A;  1ZDE A;  1LWT A;  1GPP A;  4QFQ A;  2JMZ A;  1G9Z A;  3OOR A;  3E54 A;  3C0W A;  1R7M A;  2VBO B;  3IFJ A;  4UT0 A;  4AQX A;  4UNB A;  2I3P A;  2XE0 B;  4KL6 A;  5A72 A;  1MI8 A;  4Z1Z A;  5A77 A;  2VBJ B;  4E2U A;  4D6O A;  4YIS A;  2IN0 A;  2CW8 A;  3R7P A;  3C0X A;  4O1S A;  3UVF A;  1AM2 A;  1DQ3 A;  1N3F A; 
#chains in the Genus database with same CATH homology
 4O1R A;  5AKN A;  3MIP A;  1LWS A;  3EH8 A;  4YHX A;  2O7M A;  5A0W A;  4KL5 A;  4AAB A;  1N3E A;  2EX5 A;  1UM2 A;  4AAF A;  2IN8 A;  2DCH X;  4UN9 G;  3HYI A;  5A0M B;  2JNQ A;  3QQY A;  5K08 A;  1AF5 A;  2IN9 A;  2LCJ A;  2I3Q A;  2CW7 A;  1EF0 A;  4UN7 G;  5AK9 A;  2VBO A;  2L8L A;  4AAE A;  4Z20 A;  4LOX A;  4OZ6 A;  4Z1X A;  5E5S A;  4UN8 A;  2XE0 A;  1VDE A;  3FD2 A;  3MX9 A;  2VBJ A;  2VBL B;  2QOJ Z;  2FLD A;  2VBN B;  1B24 A;  1T9I A;  2VS8 A;  1MOW A;  1U0C A;  3NZM A;  4UNA A;  1T9J A;  3OOL A;  1G9Y A;  3KO2 A;  2KEQ A;  3MXB B;  1BP7 A;  4E2T A;  4AAG A;  5I0A A;  1U0D A;  5AKM A;  4YIT A;  5A74 A;  2LQM A;  1DFA A;  4GIG A;  5E67 A;  5A78 A;  4UN7 A;  3HYJ A;  4AAD A;  5A0M A;  3MXA A;  5E63 A;  1JVA A;  1AT0 A;  1P8K Z;  5E5O A;  2IMZ A;  4EFJ A;  1ZD7 A;  4UNC A;  3MIS A;  1M5X A;  2AB5 A;  2VBL A;  2VS7 A;  4UN8 G;  2LWY A;  2VBN A;  4UN9 A;  4LQ0 A;  3IGD A;  5AKF A;  4D6N A;  4AQU A;  3MXB A;  1ZDE A;  1LWT A;  1GPP A;  2JMZ A;  1G9Z A;  3OOR A;  3E54 A;  3C0W A;  1R7M A;  2VBO B;  3IFJ A;  4UT0 A;  4AQX A;  4UNB A;  2I3P A;  2XE0 B;  4KL6 A;  5A72 A;  1MI8 A;  4Z1Z A;  5A77 A;  2VBJ B;  4E2U A;  4D6O A;  4YIS A;  2IN0 A;  2CW8 A;  3R7P A;  3C0X A;  4O1S A;  3UVF A;  1AM2 A;  1DQ3 A;  1N3F A; 
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