1GHDA

Crystal structure of the glutaryl-7-aminocephalosporanic acid acylase by mad phasing
Total Genus 48

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
153
structure length
153
Chain Sequence
QAPIAAYKPRSNEILWDGYGVPHIYGVDAPSAFYGYGWAQARSHGDNILRLYGEARGKGAEYWGPDYEQTTVWLLTNGVPERAQQWYAQQSPDFRANLDAFAAGINAYAQQNPDDISPDVRQVLPVSGADVVAHAHRLMNFLYVASPGRTLGE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS2 (30-33)AH1 (37-64)TIV2 (120-123)3H2 (126-131)AH2 (66-71)TI1 (25-28)S1 (21-24)AH5 (100-120)AH3 (76-85)AH4 (87-97)TIV1 (34-37)3H1 (73-75)TIV3 (131-134)AH6 (136-146)TIV4 (146-150)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Pseudomonas sp. 130
publication title Affinity alkylation of the Trp-B4 residue of the beta -subunit of the glutaryl 7-aminocephalosporanic acid acylase of Pseudomonas sp. 130.
pubmed doi rcsb
molecule keywords GLUTARYL-7-AMINOCEPHALOSPORANIC ACID ACYLASE
total genus 48
structure length 153
sequence length 153
ec nomenclature ec 3.5.1.-:
pdb deposition date 2000-12-07
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.439.10 Mainly Alpha Orthogonal Bundle Penicillin Amidohydrolase; domain 1 Penicillin Amidohydrolase, domain 1 1ghdA00
1AI4A 1GKFA 1GM9A 1K7DA 4BTHA 1FXHA 1AJQA 4E56A 1K5QA 4WKVA 1JVZA 3S8RA 4WKSA 3SRBA 4WKUA 4PEMA 1H2GA 3L91A 1GK0A 4E55A 4YFAA 1KECA 1AJPA 1FM2A 4WKTA 3SRAA 2WYDA 3L94A 2AE4A 1PNMA 1CP9A 3JTRA 4HSRA 3ML0A 1AI5A 1FXVA 2WYEA 4K2GA 1JX9A 1K5SA 4YF9A 4E57A 1KEHA 1GHDA 1AI7A 2AE5A 2WYCA 3JTQA 4HSTA 1GM8A 2ADVA 2AE3A 4M1JA 1E3AA 4K2FA 1AJNA 1GK9A 1JW0A 1AI6A 1OR0A 1PNLA 1GK1A 3SRCA 1GM7A 1PNKA 2WYBA 3K3WA 4PELA 4YFBA
chains in the Genus database with same CATH superfamily
1AI4A 1GKFA 1GM9A 1K7DA 4BTHA 1FXHA 1AJQA 4E56A 1K5QA 4WKVA 1JVZA 3S8RA 4WKSA 3FGTA 3SRBA 4WKUA 4PEMA 3FGRA 1H2GA 3L91A 1GK0A 4E55A 4YFAA 1KECA 1AJPA 1FM2A 4WKTA 3SRAA 2WYDA 3L94A 2AE4A 1PNMA 1CP9A 3JTRA 4HSRA 3ML0A 1AI5A 1FXVA 2WYEA 4K2GA 1JX9A 1K5SA 4YF9A 4E57A 1KEHA 1GHDA 4BWCA 1AI7A 2AE5A 2WYCA 3JTQA 4HSTA 1GM8A 2ADVA 2AE3A 4M1JA 1E3AA 4K2FA 1AJNA 1GK9A 1JW0A 1AI6A 1OR0A 1PNLA 1GK1A 3SRCA 1GM7A 1PNKA 2WYBA 3K3WA 4PELA 4YFBA
chains in the Genus database with same CATH topology
1AI4A 1GKFA 1GM9A 1K7DA 4BTHA 1FXHA 1AJQA 4E56A 1K5QA 4WKVA 1JVZA 3S8RA 4WKSA 3SRBA 4WKUA 4PEMA 1H2GA 3L91A 1GK0A 4E55A 4YFAA 1KECA 1AJPA 1FM2A 4WKTA 3SRAA 2WYDA 3L94A 2AE4A 1PNMA 1CP9A 3JTRA 4HSRA 3ML0A 1AI5A 1FXVA 2WYEA 4K2GA 1JX9A 1K5SA 4YF9A 4E57A 1KEHA 1GHDA 1AI7A 2AE5A 2WYCA 3JTQA 4HSTA 1GM8A 2ADVA 2AE3A 4M1JA 1E3AA 4K2FA 1AJNA 1GK9A 1JW0A 1AI6A 1OR0A 1PNLA 1GK1A 3SRCA 1GM7A 1PNKA 2WYBA 3K3WA 4PELA 4YFBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1AI4 A;  1GKF A;  1GM9 A;  1K7D A;  4BTH A;  1FXH A;  1AJQ A;  4E56 A;  1K5Q A;  4WKV A;  1JVZ A;  3S8R A;  4WKS A;  3SRB A;  4WKU A;  4PEM A;  1H2G A;  3L91 A;  1GK0 A;  4E55 A;  4YFA A;  1KEC A;  1AJP A;  1FM2 A;  4WKT A;  3SRA A;  2WYD A;  3L94 A;  2AE4 A;  1PNM A;  1CP9 A;  3JTR A;  4HSR A;  3ML0 A;  1AI5 A;  1FXV A;  2WYE A;  4K2G A;  1JX9 A;  1K5S A;  4YF9 A;  4E57 A;  1KEH A;  1GHD A;  1AI7 A;  2AE5 A;  2WYC A;  3JTQ A;  4HST A;  1GM8 A;  2ADV A;  2AE3 A;  4M1J A;  1E3A A;  4K2F A;  1AJN A;  1GK9 A;  1JW0 A;  1AI6 A;  1OR0 A;  1PNL A;  1GK1 A;  3SRC A;  1GM7 A;  1PNK A;  2WYB A;  3K3W A;  4PEL A;  4YFB A; 
#chains in the Genus database with same CATH topology
 1AI4 A;  1GKF A;  1GM9 A;  1K7D A;  4BTH A;  1FXH A;  1AJQ A;  4E56 A;  1K5Q A;  4WKV A;  1JVZ A;  3S8R A;  4WKS A;  3FGT A;  3SRB A;  4WKU A;  4PEM A;  3FGR A;  1H2G A;  3L91 A;  1GK0 A;  4E55 A;  4YFA A;  1KEC A;  1AJP A;  1FM2 A;  4WKT A;  3SRA A;  2WYD A;  3L94 A;  2AE4 A;  1PNM A;  1CP9 A;  3JTR A;  4HSR A;  3ML0 A;  1AI5 A;  1FXV A;  2WYE A;  4K2G A;  1JX9 A;  1K5S A;  4YF9 A;  4E57 A;  1KEH A;  1GHD A;  4BWC A;  1AI7 A;  2AE5 A;  2WYC A;  3JTQ A;  4HST A;  1GM8 A;  2ADV A;  2AE3 A;  4M1J A;  1E3A A;  4K2F A;  1AJN A;  1GK9 A;  1JW0 A;  1AI6 A;  1OR0 A;  1PNL A;  1GK1 A;  3SRC A;  1GM7 A;  1PNK A;  2WYB A;  3K3W A;  4PEL A;  4YFB A; 
#chains in the Genus database with same CATH homology
 1AI4 A;  1GKF A;  1GM9 A;  1K7D A;  4BTH A;  1FXH A;  1AJQ A;  4E56 A;  1K5Q A;  4WKV A;  1JVZ A;  3S8R A;  4WKS A;  3SRB A;  4WKU A;  4PEM A;  1H2G A;  3L91 A;  1GK0 A;  4E55 A;  4YFA A;  1KEC A;  1AJP A;  1FM2 A;  4WKT A;  3SRA A;  2WYD A;  3L94 A;  2AE4 A;  1PNM A;  1CP9 A;  3JTR A;  4HSR A;  3ML0 A;  1AI5 A;  1FXV A;  2WYE A;  4K2G A;  1JX9 A;  1K5S A;  4YF9 A;  4E57 A;  1KEH A;  1GHD A;  1AI7 A;  2AE5 A;  2WYC A;  3JTQ A;  4HST A;  1GM8 A;  2ADV A;  2AE3 A;  4M1J A;  1E3A A;  4K2F A;  1AJN A;  1GK9 A;  1JW0 A;  1AI6 A;  1OR0 A;  1PNL A;  1GK1 A;  3SRC A;  1GM7 A;  1PNK A;  2WYB A;  3K3W A;  4PEL A;  4YFB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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