1JW0A

Structure of cephalosporin acylase in complex with glutarate
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
152
structure length
152
Chain Sequence
QAPIAAYKPRSNEILWDGYGVPHIYGVDAPSAFYGYGWAQARSHGDNILRLYGEARGKGAEYWGPDYEQTTVWLLTNGVPERAQQWYAQQSPDFRANLDAFAAGINAYAQQNPDDISPEVRQVLPVSGADVVAHAHRLMNFLYVASPGRTLG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of cephalosporin acylase in complex with glutaryl-7-aminocephalosporanic acid and glutarate: insight into the basis of its substrate specificity
pubmed doi rcsb
molecule tags Hydrolase
source organism Brevundimonas diminuta
molecule keywords cephalosporin acylase alpha chain
total genus 50
structure length 152
sequence length 152
ec nomenclature ec 3.5.1.93: Glutaryl-7-aminocephalosporanic-acid acylase.
pdb deposition date 2001-09-01
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.439.10 Mainly Alpha Orthogonal Bundle Penicillin Amidohydrolase; domain 1 Penicillin Amidohydrolase, domain 1 1jw0A00
1FXHA 3JTQA 1PNLA 1GM7A 3JTRA 4PELA 4WKUA 4PEMA 4E56A 4M1JA 1PNKA 3SRCA 1GM8A 2AE3A 2WYDA 1K5QA 1GHDA 1JVZA 1AJPA 4K2GA 2AE4A 4E55A 1KECA 1AI5A 4E57A 2WYBA 1K7DA 4HSRA 1AJQA 4YFAA 1H2GA 1KEHA 1PNMA 4YF9A 4YFBA 3S8RA 1OR0A 1FXVA 1AI4A 4HSTA 1E3AA 1GK9A 1AJNA 1CP9A 1GK1A 2AE5A 3K3WA 1JX9A 1GKFA 3L91A 2WYCA 4WKSA 3SRAA 1FM2A 3ML0A 1AI7A 1GK0A 1GM9A 1K5SA 2ADVA 3L94A 4K2FA 1JW0A 1AI6A 2WYEA 4WKVA 3SRBA 4WKTA 4BTHA
chains in the Genus database with same CATH superfamily
3FGTA 1FXHA 3JTQA 1PNLA 1GM7A 3JTRA 4PELA 4WKUA 4PEMA 4E56A 4M1JA 1PNKA 3SRCA 1GM8A 2AE3A 2WYDA 1K5QA 1GHDA 1JVZA 1AJPA 4K2GA 2AE4A 4E55A 1KECA 1AI5A 4E57A 2WYBA 1K7DA 4HSRA 1AJQA 4YFAA 1H2GA 1KEHA 1PNMA 4YF9A 4YFBA 3S8RA 1OR0A 1FXVA 1AI4A 4HSTA 1E3AA 1GK9A 1AJNA 1CP9A 1GK1A 2AE5A 3K3WA 1JX9A 1GKFA 3L91A 2WYCA 4WKSA 3SRAA 1FM2A 3ML0A 1AI7A 1GK0A 1GM9A 1K5SA 2ADVA 3L94A 4K2FA 1JW0A 1AI6A 2WYEA 3FGRA 4WKVA 4BWCA 3SRBA 4WKTA 4BTHA
chains in the Genus database with same CATH topology
1FXHA 3JTQA 1PNLA 1GM7A 3JTRA 4PELA 4WKUA 4PEMA 4E56A 4M1JA 1PNKA 3SRCA 1GM8A 2AE3A 2WYDA 1K5QA 1GHDA 1JVZA 1AJPA 4K2GA 2AE4A 4E55A 1KECA 1AI5A 4E57A 2WYBA 1K7DA 4HSRA 1AJQA 4YFAA 1H2GA 1KEHA 1PNMA 4YF9A 4YFBA 3S8RA 1OR0A 1FXVA 1AI4A 4HSTA 1E3AA 1GK9A 1AJNA 1CP9A 1GK1A 2AE5A 3K3WA 1JX9A 1GKFA 3L91A 2WYCA 4WKSA 3SRAA 1FM2A 3ML0A 1AI7A 1GK0A 1GM9A 1K5SA 2ADVA 3L94A 4K2FA 1JW0A 1AI6A 2WYEA 4WKVA 3SRBA 4WKTA 4BTHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1FXH A;  3JTQ A;  1PNL A;  1GM7 A;  3JTR A;  4PEL A;  4WKU A;  4PEM A;  4E56 A;  4M1J A;  1PNK A;  3SRC A;  1GM8 A;  2AE3 A;  2WYD A;  1K5Q A;  1GHD A;  1JVZ A;  1AJP A;  4K2G A;  2AE4 A;  4E55 A;  1KEC A;  1AI5 A;  4E57 A;  2WYB A;  1K7D A;  4HSR A;  1AJQ A;  4YFA A;  1H2G A;  1KEH A;  1PNM A;  4YF9 A;  4YFB A;  3S8R A;  1OR0 A;  1FXV A;  1AI4 A;  4HST A;  1E3A A;  1GK9 A;  1AJN A;  1CP9 A;  1GK1 A;  2AE5 A;  3K3W A;  1JX9 A;  1GKF A;  3L91 A;  2WYC A;  4WKS A;  3SRA A;  1FM2 A;  3ML0 A;  1AI7 A;  1GK0 A;  1GM9 A;  1K5S A;  2ADV A;  3L94 A;  4K2F A;  1JW0 A;  1AI6 A;  2WYE A;  4WKV A;  3SRB A;  4WKT A;  4BTH A; 
#chains in the Genus database with same CATH topology
 3FGT A;  1FXH A;  3JTQ A;  1PNL A;  1GM7 A;  3JTR A;  4PEL A;  4WKU A;  4PEM A;  4E56 A;  4M1J A;  1PNK A;  3SRC A;  1GM8 A;  2AE3 A;  2WYD A;  1K5Q A;  1GHD A;  1JVZ A;  1AJP A;  4K2G A;  2AE4 A;  4E55 A;  1KEC A;  1AI5 A;  4E57 A;  2WYB A;  1K7D A;  4HSR A;  1AJQ A;  4YFA A;  1H2G A;  1KEH A;  1PNM A;  4YF9 A;  4YFB A;  3S8R A;  1OR0 A;  1FXV A;  1AI4 A;  4HST A;  1E3A A;  1GK9 A;  1AJN A;  1CP9 A;  1GK1 A;  2AE5 A;  3K3W A;  1JX9 A;  1GKF A;  3L91 A;  2WYC A;  4WKS A;  3SRA A;  1FM2 A;  3ML0 A;  1AI7 A;  1GK0 A;  1GM9 A;  1K5S A;  2ADV A;  3L94 A;  4K2F A;  1JW0 A;  1AI6 A;  2WYE A;  3FGR A;  4WKV A;  4BWC A;  3SRB A;  4WKT A;  4BTH A; 
#chains in the Genus database with same CATH homology
 1FXH A;  3JTQ A;  1PNL A;  1GM7 A;  3JTR A;  4PEL A;  4WKU A;  4PEM A;  4E56 A;  4M1J A;  1PNK A;  3SRC A;  1GM8 A;  2AE3 A;  2WYD A;  1K5Q A;  1GHD A;  1JVZ A;  1AJP A;  4K2G A;  2AE4 A;  4E55 A;  1KEC A;  1AI5 A;  4E57 A;  2WYB A;  1K7D A;  4HSR A;  1AJQ A;  4YFA A;  1H2G A;  1KEH A;  1PNM A;  4YF9 A;  4YFB A;  3S8R A;  1OR0 A;  1FXV A;  1AI4 A;  4HST A;  1E3A A;  1GK9 A;  1AJN A;  1CP9 A;  1GK1 A;  2AE5 A;  3K3W A;  1JX9 A;  1GKF A;  3L91 A;  2WYC A;  4WKS A;  3SRA A;  1FM2 A;  3ML0 A;  1AI7 A;  1GK0 A;  1GM9 A;  1K5S A;  2ADV A;  3L94 A;  4K2F A;  1JW0 A;  1AI6 A;  2WYE A;  4WKV A;  3SRB A;  4WKT A;  4BTH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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