1GK0A

Structure-based prediction of modifications in glutarylamidase to allow single-step enzymatic production of 7-aminocephalosporanic acid from cephalosporin c
Total Genus 49

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
153
structure length
153
Chain Sequence
QAPIAAYKPRSNEILWDGYGVPHIYGVDAPSAFYGYGWAQARSHGDNILRLYGEARGKGAEYWGPDYEQTTVWLLTNGVPERAQQWYAQQSPDFRANLDAFAAGINAYAQQNPDDISPEVRQVLPVSGADVVAHAHRLMNFLYVASPGRTLGE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYAH1 (36-63)S2 (28-32)AH5 (99-118)TI3 (120-123)3H2 (125-130)AH2 (65-70)3H1 (72-74)AH6 (135-145)AH3 (75-84)TI2 (119-122)TIV3 (145-149)TIV4 (147-150)TI1 (24-27)S1 (20-24)TIV1 (33-36)AH4 (86-96)TIV2 (130-133)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Pseudomonas sp.
publication title Structure-Based Prediction of Modifications in Glutarylamidase to Allow Single-Step Enzymatic Production of 7-Aminocephalosporanic Acid from Cephalosporin C.
pubmed doi rcsb
molecule keywords CEPHALOSPORIN ACYLASE
total genus 49
structure length 153
sequence length 153
chains with identical sequence C
ec nomenclature ec 3.5.1.93: Glutaryl-7-aminocephalosporanic-acid acylase.
pdb deposition date 2001-08-07
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.439.10 Mainly Alpha Orthogonal Bundle Penicillin Amidohydrolase; domain 1 Penicillin Amidohydrolase, domain 1 1gk0A00
1GM8A 1K7DA 1JVZA 1JW0A 1OR0A 3L91A 4M1JA 2AE5A 1AJQA 1KEHA 2AE4A 1AI6A 3JTRA 4K2GA 3K3WA 4YFBA 1GM7A 2ADVA 1PNMA 2WYDA 2WYCA 2WYEA 4WKTA 1GK9A 3ML0A 3JTQA 4WKUA 4YFAA 1GHDA 4E55A 1AI5A 3S8RA 3SRCA 4WKVA 4HSTA 1GK1A 4PELA 4K2FA 3SRBA 1AJNA 4BTHA 1PNKA 1K5QA 1AI4A 1PNLA 1GKFA 3L94A 1FXVA 2AE3A 1CP9A 1FXHA 3SRAA 1FM2A 4PEMA 2WYBA 4HSRA 4YF9A 1GM9A 1H2GA 1AI7A 4WKSA 1GK0A 1E3AA 1AJPA 1K5SA 1KECA 4E57A 4E56A 1JX9A
chains in the Genus database with same CATH superfamily
1GM8A 1K7DA 1JVZA 1JW0A 1OR0A 3L91A 4M1JA 2AE5A 1AJQA 1KEHA 2AE4A 1AI6A 3JTRA 4K2GA 3K3WA 4YFBA 1GM7A 2ADVA 1PNMA 2WYDA 2WYCA 2WYEA 4WKTA 1GK9A 3ML0A 3JTQA 4WKUA 4YFAA 1GHDA 4E55A 1AI5A 3S8RA 3SRCA 4WKVA 4HSTA 1GK1A 4PELA 4K2FA 3SRBA 1AJNA 4BTHA 1PNKA 1K5QA 1AI4A 1PNLA 1GKFA 3L94A 1FXVA 2AE3A 1CP9A 1FXHA 4BWCA 3SRAA 1FM2A 4PEMA 2WYBA 4HSRA 4YF9A 3FGTA 1GM9A 1H2GA 1AI7A 3FGRA 1GK0A 4WKSA 1E3AA 1AJPA 1K5SA 1KECA 4E57A 4E56A 1JX9A
chains in the Genus database with same CATH topology
1GM8A 1K7DA 1JVZA 1JW0A 1OR0A 3L91A 4M1JA 2AE5A 1AJQA 1KEHA 2AE4A 1AI6A 3JTRA 4K2GA 3K3WA 4YFBA 1GM7A 2ADVA 1PNMA 2WYDA 2WYCA 2WYEA 4WKTA 1GK9A 3ML0A 3JTQA 4WKUA 4YFAA 1GHDA 4E55A 1AI5A 3S8RA 3SRCA 4WKVA 4HSTA 1GK1A 4PELA 4K2FA 3SRBA 1AJNA 4BTHA 1PNKA 1K5QA 1AI4A 1PNLA 1GKFA 3L94A 1FXVA 2AE3A 1CP9A 1FXHA 3SRAA 1FM2A 4PEMA 2WYBA 4HSRA 4YF9A 1GM9A 1H2GA 1AI7A 4WKSA 1GK0A 1E3AA 1AJPA 1K5SA 1KECA 4E57A 4E56A 1JX9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GM8 A;  1K7D A;  1JVZ A;  1JW0 A;  1OR0 A;  3L91 A;  4M1J A;  2AE5 A;  1AJQ A;  1KEH A;  2AE4 A;  1AI6 A;  3JTR A;  4K2G A;  3K3W A;  4YFB A;  1GM7 A;  2ADV A;  1PNM A;  2WYD A;  2WYC A;  2WYE A;  4WKT A;  1GK9 A;  3ML0 A;  3JTQ A;  4WKU A;  4YFA A;  1GHD A;  4E55 A;  1AI5 A;  3S8R A;  3SRC A;  4WKV A;  4HST A;  1GK1 A;  4PEL A;  4K2F A;  3SRB A;  1AJN A;  4BTH A;  1PNK A;  1K5Q A;  1AI4 A;  1PNL A;  1GKF A;  3L94 A;  1FXV A;  2AE3 A;  1CP9 A;  1FXH A;  3SRA A;  1FM2 A;  4PEM A;  2WYB A;  4HSR A;  4YF9 A;  1GM9 A;  1H2G A;  1AI7 A;  4WKS A;  1GK0 A;  1E3A A;  1AJP A;  1K5S A;  1KEC A;  4E57 A;  4E56 A;  1JX9 A; 
#chains in the Genus database with same CATH topology
 1GM8 A;  1K7D A;  1JVZ A;  1JW0 A;  1OR0 A;  3L91 A;  4M1J A;  2AE5 A;  1AJQ A;  1KEH A;  2AE4 A;  1AI6 A;  3JTR A;  4K2G A;  3K3W A;  4YFB A;  1GM7 A;  2ADV A;  1PNM A;  2WYD A;  2WYC A;  2WYE A;  4WKT A;  1GK9 A;  3ML0 A;  3JTQ A;  4WKU A;  4YFA A;  1GHD A;  4E55 A;  1AI5 A;  3S8R A;  3SRC A;  4WKV A;  4HST A;  1GK1 A;  4PEL A;  4K2F A;  3SRB A;  1AJN A;  4BTH A;  1PNK A;  1K5Q A;  1AI4 A;  1PNL A;  1GKF A;  3L94 A;  1FXV A;  2AE3 A;  1CP9 A;  1FXH A;  4BWC A;  3SRA A;  1FM2 A;  4PEM A;  2WYB A;  4HSR A;  4YF9 A;  3FGT A;  1GM9 A;  1H2G A;  1AI7 A;  3FGR A;  1GK0 A;  4WKS A;  1E3A A;  1AJP A;  1K5S A;  1KEC A;  4E57 A;  4E56 A;  1JX9 A; 
#chains in the Genus database with same CATH homology
 1GM8 A;  1K7D A;  1JVZ A;  1JW0 A;  1OR0 A;  3L91 A;  4M1J A;  2AE5 A;  1AJQ A;  1KEH A;  2AE4 A;  1AI6 A;  3JTR A;  4K2G A;  3K3W A;  4YFB A;  1GM7 A;  2ADV A;  1PNM A;  2WYD A;  2WYC A;  2WYE A;  4WKT A;  1GK9 A;  3ML0 A;  3JTQ A;  4WKU A;  4YFA A;  1GHD A;  4E55 A;  1AI5 A;  3S8R A;  3SRC A;  4WKV A;  4HST A;  1GK1 A;  4PEL A;  4K2F A;  3SRB A;  1AJN A;  4BTH A;  1PNK A;  1K5Q A;  1AI4 A;  1PNL A;  1GKF A;  3L94 A;  1FXV A;  2AE3 A;  1CP9 A;  1FXH A;  3SRA A;  1FM2 A;  4PEM A;  2WYB A;  4HSR A;  4YF9 A;  1GM9 A;  1H2G A;  1AI7 A;  4WKS A;  1GK0 A;  1E3A A;  1AJP A;  1K5S A;  1KEC A;  4E57 A;  4E56 A;  1JX9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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