The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
117
|
sequence length |
460
|
structure length |
427
|
Chain Sequence |
VGSFAKGTNVLMADGSIECIENIEVGNKVMGKDGRPREVIKLPRGRETMYSVVQKSEVPELLKFTCNATNELVVRTPRSVRRLSRTIKGVEYFEVITFEMGQKKAPDGRIVELVKEVSKSYPISEGPERANELVESYRKASNKAYFEWTIEARDLSLLGSHVRKATYQTYAPILYENDHFFDYMQKSKFHLTIEGPKVLAYLLGLWIGDGLSDRATFSVDSRDTSLMERVTEYAEKLNLCAEYKDRKEPQVAKTVNLYSKVENPLWDAIVGLGFLKDGVKNIPSFLSTDNIGTRETFLAGLIDSDGYVTDEHGIKATIKTIHTSVRDGLVSLARSLGLVVSVNAEPKISYAIYMSGGDVLLNVLSKCAGSKKFRPAPAAAFARECRGFYFELQELKEDDYYGITLSDDSDHQFLLANQVVVHSSGER
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Protein-splicing reaction via a thiazolidine intermediate: crystal structure of the VMA1-derived endonuclease bearing the N and C-terminal propeptides.
pubmed doi rcsb |
| molecule keywords |
VMA1-DERIVED HOMING ENDONUCLEASE X10SSS
|
| molecule tags |
Hydrolase
|
| source organism |
Saccharomyces cerevisiae
|
| total genus |
117
|
| structure length |
427
|
| sequence length |
460
|
| chains with identical sequence |
B
|
| ec nomenclature |
ec
7.1.2.2: H(+)-transporting two-sector ATPase. |
| pdb deposition date | 2001-08-29 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF05203 | Hom_end_hint | Hom_end-associated Hint |
| A | PF05204 | Hom_end | Homing endonuclease |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Beta Complex | Endonuclease - Pi-scei; Chain A, domain 1 | Hedgehog/Intein (Hint) domain | ||
| Alpha Beta | Roll | Endonuclease I-creI | Homing endonucleases | ||
| Alpha Beta | Roll | Endonuclease I-creI | Homing endonucleases |
#chains in the Genus database with same CATH superfamily 3MX9 A; 4EFJ A; 5A74 A; 4YIT A; 2JMZ A; 5A72 A; 5K08 A; 4UT0 A; 3MIS A; 4E2T A; 5AKN A; 4D6O A; 2FLD A; 4Z20 A; 4UN8 A; 1AT0 A; 3HYJ A; 3OOL A; 5E67 A; 4UN7 A; 4GIG A; 4LOX A; 2VBN B; 5I0A A; 2AB5 A; 3C0X A; 2XE0 B; 5E5S A; 4UNC A; 4AAB A; 2VBN A; 1U0D A; 2VBJ B; 1G9Z A; 4D6N A; 2XE0 A; 4O1S A; 3NZM A; 1P8K Z; 2VBJ A; 3E54 A; 1AM2 A; 4KL6 A; 4UN9 G; 1MOW A; 1T9I A; 4AAF A; 3QQY A; 2JNQ A; 2EX5 A; 4LQ0 A; 1N3E A; 1UM2 A; 2LCJ A; 3IFJ A; 2VBL B; 4AAD A; 4E2U A; 1R7M A; 2IN9 A; 2VS8 A; 1GPP A; 2O7M A; 2VBL A; 2I3P A; 1EF0 A; 2IN8 A; 5AK9 A; 2LWY A; 4YHX A; 3MXB B; 2DCH X; 2KEQ A; 5E5O A; 4AQU A; 1MI8 A; 4OZ6 A; 2QOJ Z; 3MXB A; 5A0M B; 2I3Q A; 1ZD7 A; 2CW7 A; 4UNB A; 4UN8 G; 3MXA A; 4Z1Z A; 5A0M A; 5A0W A; 1B24 A; 4O1R A; 2IN0 A; 3MIP A; 3R7P A; 3EH8 A; 3HYI A; 3KO2 A; 2IMZ A; 5E63 A; 4AQX A; 1BP7 A; 1VDE A; 1T9J A; 1JVA A; 1U0C A; 2VBO B; 5A77 A; 5AKM A; 3OOR A; 1DFA A; 3C0W A; 1LWS A; 1ZDE A; 2LQM A; 5AKF A; 4Z1X A; 2VBO A; 4AAG A; 4UN9 A; 5A78 A; 3UVF A; 3FD2 A; 4AAE A; 4UN7 G; 3IGD A; 2L8L A; 1DQ3 A; 1N3F A; 2CW8 A; 2VS7 A; 1M5X A; 4YIS A; 1LWT A; 4KL5 A; 1G9Y A; 1AF5 A; 4UNA A; #chains in the Genus database with same CATH topology 3MX9 A; 4EFJ A; 5A74 A; 4YIT A; 2JMZ A; 5A72 A; 5K08 A; 4UT0 A; 3MIS A; 4E2T A; 5AKN A; 4LX3 A; 4D6O A; 2FLD A; 4Z20 A; 4UN8 A; 1AT0 A; 3HYJ A; 3OOL A; 5E67 A; 4UN7 A; 4GIG A; 4LOX A; 2VBN B; 5I0A A; 2AB5 A; 3C0X A; 2XE0 B; 5E5S A; 4UNC A; 4AAB A; 2VBN A; 1U0D A; 2VBJ B; 1G9Z A; 4D6N A; 2XE0 A; 4O1S A; 3NZM A; 1P8K Z; 2VBJ A; 3E54 A; 1AM2 A; 4KL6 A; 4UN9 G; 1MOW A; 1T9I A; 4AAF A; 3QQY A; 2JNQ A; 2EX5 A; 4LQ0 A; 1N3E A; 1UM2 A; 2LCJ A; 3IFJ A; 2VBL B; 4AAD A; 4E2U A; 1R7M A; 2IN9 A; 2VS8 A; 1GPP A; 2O7M A; 2VBL A; 2I3P A; 1EF0 A; 2IN8 A; 5AK9 A; 2LWY A; 4YHX A; 3MXB B; 2DCH X; 2KEQ A; 5E5O A; 4AQU A; 1MI8 A; 4KZS A; 4OZ6 A; 2QOJ Z; 3MXB A; 5A0M B; 2I3Q A; 4QFQ A; 1ZD7 A; 2CW7 A; 4UNB A; 4UN8 G; 3MXA A; 4Z1Z A; 5A0M A; 5A0W A; 1B24 A; 4O1R A; 2IN0 A; 3MIP A; 3R7P A; 3EH8 A; 3HYI A; 3KO2 A; 2IMZ A; 5E63 A; 4AQX A; 1BP7 A; 1VDE A; 1T9J A; 1JVA A; 1U0C A; 2VBO B; 5A77 A; 5AKM A; 3OOR A; 1DFA A; 2F4L A; 3C0W A; 1LWS A; 1ZDE A; 2LQM A; 5AKF A; 4Z1X A; 2VBO A; 4AAG A; 4UN9 A; 5A78 A; 3UVF A; 3FD2 A; 4AAE A; 4UN7 G; 3IGD A; 2L8L A; 1DQ3 A; 1N3F A; 2CW8 A; 2VS7 A; 1M5X A; 4YIS A; 1LWT A; 4KL5 A; 1G9Y A; 1AF5 A; 4UNA A; #chains in the Genus database with same CATH homology 3MX9 A; 4EFJ A; 5A74 A; 4YIT A; 2JMZ A; 5A72 A; 5K08 A; 4UT0 A; 3MIS A; 4E2T A; 5AKN A; 4D6O A; 2FLD A; 4Z20 A; 4UN8 A; 1AT0 A; 3HYJ A; 3OOL A; 5E67 A; 4UN7 A; 4GIG A; 4LOX A; 2VBN B; 5I0A A; 2AB5 A; 3C0X A; 2XE0 B; 5E5S A; 4UNC A; 4AAB A; 2VBN A; 1U0D A; 2VBJ B; 1G9Z A; 4D6N A; 2XE0 A; 4O1S A; 3NZM A; 1P8K Z; 2VBJ A; 3E54 A; 1AM2 A; 4KL6 A; 4UN9 G; 1MOW A; 1T9I A; 4AAF A; 3QQY A; 2JNQ A; 2EX5 A; 4LQ0 A; 1N3E A; 1UM2 A; 2LCJ A; 3IFJ A; 2VBL B; 4AAD A; 4E2U A; 1R7M A; 2IN9 A; 2VS8 A; 1GPP A; 2O7M A; 2VBL A; 2I3P A; 1EF0 A; 2IN8 A; 5AK9 A; 2LWY A; 4YHX A; 3MXB B; 2DCH X; 2KEQ A; 5E5O A; 4AQU A; 1MI8 A; 4OZ6 A; 2QOJ Z; 3MXB A; 5A0M B; 2I3Q A; 1ZD7 A; 2CW7 A; 4UNB A; 4UN8 G; 3MXA A; 4Z1Z A; 5A0M A; 5A0W A; 1B24 A; 4O1R A; 2IN0 A; 3MIP A; 3R7P A; 3EH8 A; 3HYI A; 3KO2 A; 2IMZ A; 5E63 A; 4AQX A; 1BP7 A; 1VDE A; 1T9J A; 1JVA A; 1U0C A; 2VBO B; 5A77 A; 5AKM A; 3OOR A; 1DFA A; 3C0W A; 1LWS A; 1ZDE A; 2LQM A; 5AKF A; 4Z1X A; 2VBO A; 4AAG A; 4UN9 A; 5A78 A; 3UVF A; 3FD2 A; 4AAE A; 4UN7 G; 3IGD A; 2L8L A; 1DQ3 A; 1N3F A; 2CW8 A; 2VS7 A; 1M5X A; 4YIS A; 1LWT A; 4KL5 A; 1G9Y A; 1AF5 A; 4UNA A;
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