The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
97
|
sequence length |
454
|
structure length |
448
|
Chain Sequence |
CFAKGTNVLMADGSIECIENIEVGNKVMGKDGRPREVIKLPRGRETMYSVVQKSQHRAHKSSREVPELLKFTCNATHELVVRTPRSVRRLSRTIKGVEYFEVITFEMGQKKAPDGRIVELVKEVSKSYPISEGPERANELVESYRKASNKAYFEWTIEARDLSLLGSHVRKATYQTYAPILYENDHFFDYMQKSKFHLTIEGPKVLAYLLGLWIGDGLSDRATFSVDSRDTSLMERVTEYAEKLNLCAEYKDRKAKTVNLYSKVVRGNGIRNNLNTENPLWDAIVGLGFLKDGVKNIPSFLSTDNIGTRETFLAGLIDSDGYVTDEHGIKATIKTIHTSVRDGLVSLARSLGLVVSVNAEPAKVDMNGTKHKISYAIYMSGGDVLLNVLSKCAGSKKFRPAPAAAFARECRGFYFELQELKEDDYYGITLSDDSDHQFLLANQVVVHN
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structure of the intein homing endonuclease PI-SceI bound to its recognition sequence.
pubmed doi rcsb |
| molecule tags |
Hydrolase/dna
|
| source organism |
Saccharomyces cerevisiae
|
| molecule keywords |
PI-SceI DNA substrate top strand
|
| total genus |
97
|
| structure length |
448
|
| sequence length |
454
|
| ec nomenclature |
ec
7.1.2.2: H(+)-transporting two-sector ATPase. |
| pdb deposition date | 2002-06-03 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF05203 | Hom_end_hint | Hom_end-associated Hint |
| A | PF05204 | Hom_end | Homing endonuclease |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Beta Complex | Endonuclease - Pi-scei; Chain A, domain 1 | Hedgehog/Intein (Hint) domain | ||
| Alpha Beta | Roll | Endonuclease I-creI | Homing endonucleases | ||
| Alpha Beta | Roll | Endonuclease I-creI | Homing endonucleases |
#chains in the Genus database with same CATH superfamily 5A0M B; 5I0A A; 3IFJ A; 2IN8 A; 4UNC A; 1AT0 A; 2LCJ A; 4Z20 A; 4UNB A; 4UNA A; 4Z1X A; 3IGD A; 5A78 A; 3C0W A; 1B24 A; 1R7M A; 1ZD7 A; 1T9J A; 2LQM A; 1U0C A; 5A74 A; 1T9I A; 4AAB A; 2AB5 A; 2DCH X; 1BP7 A; 4O1S A; 3MXA A; 4D6O A; 2CW8 A; 3UVF A; 5E63 A; 4LOX A; 3E54 A; 1UM2 A; 5A0W A; 2CW7 A; 1GPP A; 4KL5 A; 2VBN A; 4AAF A; 3HYI A; 2VS7 A; 1AM2 A; 2O7M A; 1MOW A; 2VBN B; 1AF5 A; 2L8L A; 1U0D A; 2QOJ Z; 4UN9 G; 2IMZ A; 4GIG A; 2VBO A; 4AAG A; 3NZM A; 1G9Y A; 1G9Z A; 2VBO B; 2LWY A; 1LWT A; 3OOR A; 4D6N A; 4UN9 A; 2IN0 A; 3KO2 A; 1JVA A; 4UN7 G; 4E2T A; 1VDE A; 2JNQ A; 4YIT A; 4O1R A; 1N3E A; 3R7P A; 3HYJ A; 4UN7 A; 5E5S A; 1P8K Z; 2IN9 A; 3EH8 A; 5E5O A; 2VS8 A; 2VBJ A; 4E2U A; 1ZDE A; 2EX5 A; 3MXB A; 1DFA A; 5A72 A; 5K08 A; 1MI8 A; 4UT0 A; 2VBJ B; 5A77 A; 2I3P A; 5AKN A; 4YHX A; 1EF0 A; 1LWS A; 1DQ3 A; 3MXB B; 3OOL A; 4KL6 A; 3MIP A; 4LQ0 A; 4AAD A; 2VBL A; 2KEQ A; 4OZ6 A; 2VBL B; 5AK9 A; 4UN8 G; 2I3Q A; 1M5X A; 3C0X A; 5E67 A; 2XE0 A; 4Z1Z A; 3MIS A; 2JMZ A; 4AQX A; 4UN8 A; 2XE0 B; 4EFJ A; 2FLD A; 3QQY A; 4AQU A; 5AKF A; 3FD2 A; 5A0M A; 1N3F A; 4AAE A; 3MX9 A; 5AKM A; 4YIS A; #chains in the Genus database with same CATH topology 5A0M B; 5I0A A; 3IFJ A; 2IN8 A; 4UNC A; 1AT0 A; 2LCJ A; 4Z20 A; 4UNB A; 4UNA A; 4Z1X A; 3IGD A; 5A78 A; 3C0W A; 1B24 A; 1R7M A; 1ZD7 A; 1T9J A; 2LQM A; 1U0C A; 5A74 A; 1T9I A; 4AAB A; 2AB5 A; 2DCH X; 1BP7 A; 4O1S A; 4LX3 A; 3MXA A; 4D6O A; 2CW8 A; 3UVF A; 5E63 A; 4LOX A; 3E54 A; 1UM2 A; 5A0W A; 2CW7 A; 1GPP A; 4KL5 A; 2VBN A; 4AAF A; 3HYI A; 2VS7 A; 1AM2 A; 2O7M A; 1MOW A; 2VBN B; 1AF5 A; 2L8L A; 1U0D A; 2QOJ Z; 4UN9 G; 2IMZ A; 4GIG A; 2VBO A; 4AAG A; 3NZM A; 1G9Y A; 1G9Z A; 2VBO B; 2LWY A; 1LWT A; 3OOR A; 4D6N A; 4UN9 A; 2IN0 A; 3KO2 A; 1JVA A; 4UN7 G; 4E2T A; 1VDE A; 2JNQ A; 4YIT A; 4O1R A; 1N3E A; 3R7P A; 3HYJ A; 4UN7 A; 5E5S A; 1P8K Z; 2IN9 A; 3EH8 A; 5E5O A; 2VS8 A; 2VBJ A; 4E2U A; 1ZDE A; 2EX5 A; 3MXB A; 1DFA A; 5A72 A; 5K08 A; 1MI8 A; 4UT0 A; 2VBJ B; 5A77 A; 2I3P A; 5AKN A; 4YHX A; 1EF0 A; 1LWS A; 1DQ3 A; 3MXB B; 3OOL A; 4QFQ A; 4KL6 A; 3MIP A; 4LQ0 A; 4AAD A; 2VBL A; 2KEQ A; 4OZ6 A; 2VBL B; 4KZS A; 5AK9 A; 4UN8 G; 2I3Q A; 1M5X A; 3C0X A; 5E67 A; 2XE0 A; 4Z1Z A; 3MIS A; 2JMZ A; 4AQX A; 4UN8 A; 2XE0 B; 4EFJ A; 2FLD A; 3QQY A; 4AQU A; 2F4L A; 5AKF A; 3FD2 A; 5A0M A; 1N3F A; 4AAE A; 3MX9 A; 5AKM A; 4YIS A; #chains in the Genus database with same CATH homology 5A0M B; 5I0A A; 3IFJ A; 2IN8 A; 4UNC A; 1AT0 A; 2LCJ A; 4Z20 A; 4UNB A; 4UNA A; 4Z1X A; 3IGD A; 5A78 A; 3C0W A; 1B24 A; 1R7M A; 1ZD7 A; 1T9J A; 2LQM A; 1U0C A; 5A74 A; 1T9I A; 4AAB A; 2AB5 A; 2DCH X; 1BP7 A; 4O1S A; 3MXA A; 4D6O A; 2CW8 A; 3UVF A; 5E63 A; 4LOX A; 3E54 A; 1UM2 A; 5A0W A; 2CW7 A; 1GPP A; 4KL5 A; 2VBN A; 4AAF A; 3HYI A; 2VS7 A; 1AM2 A; 2O7M A; 1MOW A; 2VBN B; 1AF5 A; 2L8L A; 1U0D A; 2QOJ Z; 4UN9 G; 2IMZ A; 4GIG A; 2VBO A; 4AAG A; 3NZM A; 1G9Y A; 1G9Z A; 2VBO B; 2LWY A; 1LWT A; 3OOR A; 4D6N A; 4UN9 A; 2IN0 A; 3KO2 A; 1JVA A; 4UN7 G; 4E2T A; 1VDE A; 2JNQ A; 4YIT A; 4O1R A; 1N3E A; 3R7P A; 3HYJ A; 4UN7 A; 5E5S A; 1P8K Z; 2IN9 A; 3EH8 A; 5E5O A; 2VS8 A; 2VBJ A; 4E2U A; 1ZDE A; 2EX5 A; 3MXB A; 1DFA A; 5A72 A; 5K08 A; 1MI8 A; 4UT0 A; 2VBJ B; 5A77 A; 2I3P A; 5AKN A; 4YHX A; 1EF0 A; 1LWS A; 1DQ3 A; 3MXB B; 3OOL A; 4KL6 A; 3MIP A; 4LQ0 A; 4AAD A; 2VBL A; 2KEQ A; 4OZ6 A; 2VBL B; 5AK9 A; 4UN8 G; 2I3Q A; 1M5X A; 3C0X A; 5E67 A; 2XE0 A; 4Z1Z A; 3MIS A; 2JMZ A; 4AQX A; 4UN8 A; 2XE0 B; 4EFJ A; 2FLD A; 3QQY A; 4AQU A; 5AKF A; 3FD2 A; 5A0M A; 1N3F A; 4AAE A; 3MX9 A; 5AKM A; 4YIS A;
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