1LWTA

Crystal structure of the intein homing endonuclease pi-scei bound to its substrate dna (ca2+ free)
Total Genus 97
50100150200250300350400020406080100
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
97
sequence length
454
structure length
448
Chain Sequence
CFAKGTNVLMADGSIECIENIEVGNKVMGKDGRPREVIKLPRGRETMYSVVQKSQHRAHKSSREVPELLKFTCNATHELVVRTPRSVRRLSRTIKGVEYFEVITFEMGQKKAPDGRIVELVKEVSKSYPISEGPERANELVESYRKASNKAYFEWTIEARDLSLLGSHVRKATYQTYAPILYENDHFFDYMQKSKFHLTIEGPKVLAYLLGLWIGDGLSDRATFSVDSRDTSLMERVTEYAEKLNLCAEYKDRKAKTVNLYSKVVRGNGIRNNLNTENPLWDAIVGLGFLKDGVKNIPSFLSTDNIGTRETFLAGLIDSDGYVTDEHGIKATIKTIHTSVRDGLVSLARSLGLVVSVNAEPAKVDMNGTKHKISYAIYMSGGDVLLNVLSKCAGSKKFRPAPAAAFARECRGFYFELQELKEDDYYGITLSDDSDHQFLLANQVVVHN
50100150200250300350400400300200100
020406080Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (2-3)S25 (417-424)TIV1 (3-6)EMPTY3H1 (18-20)S2 (7-8)S3 (16-17)S26 (429-432)TIV2 (9-13)S4 (25-27)TII1 (22-25)TI1 (29-32)S6 (42-45)S8 (72-75)TIV19 (409-412)AH2 (169-174)TI2 (76-79)S9 (80-86)3H2 (132-134)TIV3 (95-98)S10 (88-95)S12 (119-131)S11 (100-113)AH1 (136-147)S13 (154-160)3H3 (161-166)TIV20 (437-440)TI6 (400-403)S27 (435-436)S14 (176-179)AH8 (344-357)TI'1 (297-300)TIV14 (294-297)O2 (181-183)TIV15 (296-299)TIV11 (273-276)AH5 (237-246)TIV5 (192-196)TIV7 (232-235)AH4 (203-218)AH7 (312-326)S15 (219-220)S17 (248-250)TIV6 (220-223)S16 (223-228)S24 (380-384)TI4 (229-232)TIV8 (233-237)TIV9 (254-261)S18 (262-268)TIV10 (272-275)TIV12 (279-282)TIV13 (281-284)AH6 (285-293)TI5 (331-334)3H4 (305-308)S19 (327-330)S20 (336-341)S22 (369-370)S21 (362-366)TIV16 (370-374)S23 (376-377)TIV17 (371-375)AH9 (388-396)S5 (35-39)TI3 (114-117)AH3 (188-192)S7 (48-52)Updating...
connected with : NaN
molecule tags Hydrolase/dna
source organism Saccharomyces cerevisiae
publication title Crystal structure of the intein homing endonuclease PI-SceI bound to its recognition sequence.
pubmed doi rcsb
molecule keywords PI-SceI DNA substrate top strand
total genus 97
structure length 448
sequence length 454
ec nomenclature ec 7.1.2.2: H(+)-transporting two-sector ATPase.
pdb deposition date 2002-06-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05203 Hom_end_hint Hom_end-associated Hint
A PF05204 Hom_end Homing endonuclease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.16.10 Mainly Beta Beta Complex Endonuclease - Pi-scei; Chain A, domain 1 Hedgehog/Intein (Hint) domain 1lwtA01
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 1lwtA02
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 1lwtA03
3R7PA 2I3QA 1AM2A 5A0MB 1MOWA 3C0XA 4KL6A 4LQ0A 1ZDEA 2L8LA 1M5XA 3HYJA 4UNAA 3EH8A 2EX5A 5A78A 5AKNA 4UN8G 1N3EA 1DFAA 1AT0A 4E2TA 1UM2A 1T9JA 1MI8A 1P8KZ 2VBOA 1AF5A 4UN8A 2VBLA 2QOJZ 5E63A 4UN9A 2KEQA 5AKFA 2VBLB 2IMZA 2XE0A 5E67A 3OOLA 4UN7G 1ZD7A 3MXAA 4AAFA 2CW8A 3QQYA 5E5SA 1DQ3A 2FLDA 2IN8A 3C0WA 4UN7A 4Z1XA 4AADA 4E2UA 1EF0A 1LWTA 1R7MA 5A0WA 4Z1ZA 2JMZA 1B24A 5AK9A 1LWSA 1T9IA 3NZMA 2CW7A 4O1SA 4LOXA 2VBOB 3MIPA 3MXBA 3OORA 2O7MA 4KL5A 4AAGA 2LQMA 3E54A 4O1RA 4Z20A 5A72A 1GPPA 3KO2A 3MX9A 1G9ZA 5K08A 2XE0B 4UNCA 2JNQA 4D6NA 1N3FA 2IN9A 3IGDA 2DCHX 5A0MA 5I0AA 2IN0A 4AABA 4UNBA 4AQXA 1G9YA 3UVFA 2I3PA 4YITA 4YISA 2LCJA 3MISA 2VS8A 4EFJA 3HYIA 2VBNA 4GIGA 4YHXA 3IFJA 3MXBB 4AQUA 1JVAA 2VBNB 4AAEA 1BP7A 4UT0A 5E5OA 2VBJA 5A74A 4UN9G 2LWYA 4D6OA 1U0DA 5A77A 2VS7A 2AB5A 2VBJB 1VDEA 5AKMA 3FD2A 1U0CA 4OZ6A
chains in the Genus database with same CATH superfamily
3R7PA 2I3QA 1AM2A 5A0MB 1MOWA 3C0XA 4KL6A 4LQ0A 1ZDEA 2L8LA 1M5XA 3HYJA 2F4LA 4LX3A 4UNAA 3EH8A 2EX5A 5A78A 5AKNA 4UN8G 1N3EA 1DFAA 1AT0A 4E2TA 1UM2A 1T9JA 1MI8A 1P8KZ 2VBOA 1AF5A 4UN8A 4QFQA 2VBLA 2QOJZ 5E63A 4KZSA 4UN9A 2KEQA 5AKFA 2VBLB 2IMZA 2XE0A 5E67A 3OOLA 4UN7G 1ZD7A 3MXAA 4AAFA 2CW8A 3QQYA 5E5SA 1DQ3A 2FLDA 2IN8A 3C0WA 4UN7A 4Z1XA 4AADA 4E2UA 1EF0A 1LWTA 1R7MA 5A0WA 4Z1ZA 2JMZA 1B24A 5AK9A 1LWSA 1T9IA 3NZMA 2CW7A 4O1SA 4LOXA 2VBOB 3MIPA 3MXBA 3OORA 2O7MA 4KL5A 4AAGA 2LQMA 3E54A 4O1RA 4Z20A 5A72A 1GPPA 3KO2A 3MX9A 1G9ZA 5K08A 2XE0B 4UNCA 2JNQA 4D6NA 1N3FA 2IN9A 3IGDA 2DCHX 5A0MA 5I0AA 2IN0A 4AABA 4UNBA 4AQXA 1G9YA 3UVFA 2I3PA 4YITA 4YISA 2LCJA 3MISA 2VS8A 4EFJA 3HYIA 2VBNA 4GIGA 4YHXA 3IFJA 3MXBB 4AQUA 1JVAA 2VBNB 4AAEA 1BP7A 4UT0A 5E5OA 2VBJA 5A74A 4UN9G 2LWYA 4D6OA 1U0DA 5A77A 2VS7A 2AB5A 2VBJB 1VDEA 5AKMA 3FD2A 1U0CA 4OZ6A
chains in the Genus database with same CATH topology
3R7PA 2I3QA 1AM2A 5A0MB 1MOWA 3C0XA 4KL6A 4LQ0A 1ZDEA 2L8LA 1M5XA 3HYJA 4UNAA 3EH8A 2EX5A 5A78A 5AKNA 4UN8G 1N3EA 1DFAA 1AT0A 4E2TA 1UM2A 1T9JA 1MI8A 1P8KZ 2VBOA 1AF5A 4UN8A 2VBLA 2QOJZ 5E63A 4UN9A 2KEQA 5AKFA 2VBLB 2IMZA 2XE0A 5E67A 3OOLA 4UN7G 1ZD7A 3MXAA 4AAFA 2CW8A 3QQYA 5E5SA 1DQ3A 2FLDA 2IN8A 3C0WA 4UN7A 4Z1XA 4AADA 4E2UA 1EF0A 1LWTA 1R7MA 5A0WA 4Z1ZA 2JMZA 1B24A 5AK9A 1LWSA 1T9IA 3NZMA 2CW7A 4O1SA 4LOXA 2VBOB 3MIPA 3MXBA 3OORA 2O7MA 4KL5A 4AAGA 2LQMA 3E54A 4O1RA 4Z20A 5A72A 1GPPA 3KO2A 3MX9A 1G9ZA 5K08A 2XE0B 4UNCA 2JNQA 4D6NA 1N3FA 2IN9A 3IGDA 2DCHX 5A0MA 5I0AA 2IN0A 4AABA 4UNBA 4AQXA 1G9YA 3UVFA 2I3PA 4YITA 4YISA 2LCJA 3MISA 2VS8A 4EFJA 3HYIA 2VBNA 4GIGA 4YHXA 3IFJA 3MXBB 4AQUA 1JVAA 2VBNB 4AAEA 1BP7A 4UT0A 5E5OA 2VBJA 5A74A 4UN9G 2LWYA 4D6OA 1U0DA 5A77A 2VS7A 2AB5A 2VBJB 1VDEA 5AKMA 3FD2A 1U0CA 4OZ6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3R7P A;  2I3Q A;  1AM2 A;  5A0M B;  1MOW A;  3C0X A;  4KL6 A;  4LQ0 A;  1ZDE A;  2L8L A;  1M5X A;  3HYJ A;  4UNA A;  3EH8 A;  2EX5 A;  5A78 A;  5AKN A;  4UN8 G;  1N3E A;  1DFA A;  1AT0 A;  4E2T A;  1UM2 A;  1T9J A;  1MI8 A;  1P8K Z;  2VBO A;  1AF5 A;  4UN8 A;  2VBL A;  2QOJ Z;  5E63 A;  4UN9 A;  2KEQ A;  5AKF A;  2VBL B;  2IMZ A;  2XE0 A;  5E67 A;  3OOL A;  4UN7 G;  1ZD7 A;  3MXA A;  4AAF A;  2CW8 A;  3QQY A;  5E5S A;  1DQ3 A;  2FLD A;  2IN8 A;  3C0W A;  4UN7 A;  4Z1X A;  4AAD A;  4E2U A;  1EF0 A;  1LWT A;  1R7M A;  5A0W A;  4Z1Z A;  2JMZ A;  1B24 A;  5AK9 A;  1LWS A;  1T9I A;  3NZM A;  2CW7 A;  4O1S A;  4LOX A;  2VBO B;  3MIP A;  3MXB A;  3OOR A;  2O7M A;  4KL5 A;  4AAG A;  2LQM A;  3E54 A;  4O1R A;  4Z20 A;  5A72 A;  1GPP A;  3KO2 A;  3MX9 A;  1G9Z A;  5K08 A;  2XE0 B;  4UNC A;  2JNQ A;  4D6N A;  1N3F A;  2IN9 A;  3IGD A;  2DCH X;  5A0M A;  5I0A A;  2IN0 A;  4AAB A;  4UNB A;  4AQX A;  1G9Y A;  3UVF A;  2I3P A;  4YIT A;  4YIS A;  2LCJ A;  3MIS A;  2VS8 A;  4EFJ A;  3HYI A;  2VBN A;  4GIG A;  4YHX A;  3IFJ A;  3MXB B;  4AQU A;  1JVA A;  2VBN B;  4AAE A;  1BP7 A;  4UT0 A;  5E5O A;  2VBJ A;  5A74 A;  4UN9 G;  2LWY A;  4D6O A;  1U0D A;  5A77 A;  2VS7 A;  2AB5 A;  2VBJ B;  1VDE A;  5AKM A;  3FD2 A;  1U0C A;  4OZ6 A; 
#chains in the Genus database with same CATH topology
 3R7P A;  2I3Q A;  1AM2 A;  5A0M B;  1MOW A;  3C0X A;  4KL6 A;  4LQ0 A;  1ZDE A;  2L8L A;  1M5X A;  3HYJ A;  2F4L A;  4LX3 A;  4UNA A;  3EH8 A;  2EX5 A;  5A78 A;  5AKN A;  4UN8 G;  1N3E A;  1DFA A;  1AT0 A;  4E2T A;  1UM2 A;  1T9J A;  1MI8 A;  1P8K Z;  2VBO A;  1AF5 A;  4UN8 A;  4QFQ A;  2VBL A;  2QOJ Z;  5E63 A;  4KZS A;  4UN9 A;  2KEQ A;  5AKF A;  2VBL B;  2IMZ A;  2XE0 A;  5E67 A;  3OOL A;  4UN7 G;  1ZD7 A;  3MXA A;  4AAF A;  2CW8 A;  3QQY A;  5E5S A;  1DQ3 A;  2FLD A;  2IN8 A;  3C0W A;  4UN7 A;  4Z1X A;  4AAD A;  4E2U A;  1EF0 A;  1LWT A;  1R7M A;  5A0W A;  4Z1Z A;  2JMZ A;  1B24 A;  5AK9 A;  1LWS A;  1T9I A;  3NZM A;  2CW7 A;  4O1S A;  4LOX A;  2VBO B;  3MIP A;  3MXB A;  3OOR A;  2O7M A;  4KL5 A;  4AAG A;  2LQM A;  3E54 A;  4O1R A;  4Z20 A;  5A72 A;  1GPP A;  3KO2 A;  3MX9 A;  1G9Z A;  5K08 A;  2XE0 B;  4UNC A;  2JNQ A;  4D6N A;  1N3F A;  2IN9 A;  3IGD A;  2DCH X;  5A0M A;  5I0A A;  2IN0 A;  4AAB A;  4UNB A;  4AQX A;  1G9Y A;  3UVF A;  2I3P A;  4YIT A;  4YIS A;  2LCJ A;  3MIS A;  2VS8 A;  4EFJ A;  3HYI A;  2VBN A;  4GIG A;  4YHX A;  3IFJ A;  3MXB B;  4AQU A;  1JVA A;  2VBN B;  4AAE A;  1BP7 A;  4UT0 A;  5E5O A;  2VBJ A;  5A74 A;  4UN9 G;  2LWY A;  4D6O A;  1U0D A;  5A77 A;  2VS7 A;  2AB5 A;  2VBJ B;  1VDE A;  5AKM A;  3FD2 A;  1U0C A;  4OZ6 A; 
#chains in the Genus database with same CATH homology
 3R7P A;  2I3Q A;  1AM2 A;  5A0M B;  1MOW A;  3C0X A;  4KL6 A;  4LQ0 A;  1ZDE A;  2L8L A;  1M5X A;  3HYJ A;  4UNA A;  3EH8 A;  2EX5 A;  5A78 A;  5AKN A;  4UN8 G;  1N3E A;  1DFA A;  1AT0 A;  4E2T A;  1UM2 A;  1T9J A;  1MI8 A;  1P8K Z;  2VBO A;  1AF5 A;  4UN8 A;  2VBL A;  2QOJ Z;  5E63 A;  4UN9 A;  2KEQ A;  5AKF A;  2VBL B;  2IMZ A;  2XE0 A;  5E67 A;  3OOL A;  4UN7 G;  1ZD7 A;  3MXA A;  4AAF A;  2CW8 A;  3QQY A;  5E5S A;  1DQ3 A;  2FLD A;  2IN8 A;  3C0W A;  4UN7 A;  4Z1X A;  4AAD A;  4E2U A;  1EF0 A;  1LWT A;  1R7M A;  5A0W A;  4Z1Z A;  2JMZ A;  1B24 A;  5AK9 A;  1LWS A;  1T9I A;  3NZM A;  2CW7 A;  4O1S A;  4LOX A;  2VBO B;  3MIP A;  3MXB A;  3OOR A;  2O7M A;  4KL5 A;  4AAG A;  2LQM A;  3E54 A;  4O1R A;  4Z20 A;  5A72 A;  1GPP A;  3KO2 A;  3MX9 A;  1G9Z A;  5K08 A;  2XE0 B;  4UNC A;  2JNQ A;  4D6N A;  1N3F A;  2IN9 A;  3IGD A;  2DCH X;  5A0M A;  5I0A A;  2IN0 A;  4AAB A;  4UNB A;  4AQX A;  1G9Y A;  3UVF A;  2I3P A;  4YIT A;  4YIS A;  2LCJ A;  3MIS A;  2VS8 A;  4EFJ A;  3HYI A;  2VBN A;  4GIG A;  4YHX A;  3IFJ A;  3MXB B;  4AQU A;  1JVA A;  2VBN B;  4AAE A;  1BP7 A;  4UT0 A;  5E5O A;  2VBJ A;  5A74 A;  4UN9 G;  2LWY A;  4D6O A;  1U0D A;  5A77 A;  2VS7 A;  2AB5 A;  2VBJ B;  1VDE A;  5AKM A;  3FD2 A;  1U0C A;  4OZ6 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.