2WYBA

The quorum quenching n-acyl homoserine lactone acylase pvdq with a covalently bound dodecanoic acid
Total Genus 53

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
53
sequence length
164
structure length
164
Chain Sequence
TGLAADIRWTAYGVPHIRAKDERGLGYGIGYAYARDNACLLAEEIVTARGERARYFGSEGKSSAELDNLPSDIFYAWLNQPEALQAFWQAQTPAVRQLLEGYAAGFNRFLREADGKTTSCLGQPWLRAIATDDLLRLTRRLLVEGGVGQFADALVAAAPPGAEK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S2 (19-23)AH1 (27-54)TI1 (62-65)AH6 (136-148)AH3 (73-84)TI2 (67-70)O1 (44-125)AH5 (98-117)TI5 (128-131)TI3 (120-123)TI4 (123-126)AH7 (156-161)EMPTYS1 (11-15)AH2 (56-61)AH4 (86-95)3H1 (152-155)TI6 (148-151)TII1 (15-18)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Pseudomonas aeruginosa
publication title The Quorum-Quenching N-Acyl Homoserine Lactone Acylase Pvdq is an Ntn-Hydrolase with an Unusual Substrate-Binding Pocket
pubmed doi rcsb
molecule keywords ACYL-HOMOSERINE LACTONE ACYLASE PVDQ SUBUNIT ALPHA
total genus 53
structure length 164
sequence length 164
ec nomenclature ec 3.5.1.97: Acyl-homoserine-lactone acylase.
pdb deposition date 2009-11-16
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.439.10 Mainly Alpha Orthogonal Bundle Penicillin Amidohydrolase; domain 1 Penicillin Amidohydrolase, domain 1 2wybA00
1GM9A 4E57A 1K5SA 3L91A 3L94A 4K2GA 4WKTA 1FM2A 4E55A 1JVZA 1GKFA 4WKSA 1CP9A 1GM7A 2WYEA 1PNLA 1K5QA 3ML0A 1FXVA 1PNKA 4PELA 3SRBA 4YFBA 1K7DA 2AE4A 2AE3A 4HSTA 1H2GA 3K3WA 4WKUA 3S8RA 2WYBA 1GHDA 1GM8A 2AE5A 4E56A 1JW0A 1GK0A 1AI5A 3SRAA 4BTHA 1AI6A 4M1JA 1AI4A 1AJPA 1KECA 2ADVA 4K2FA 3SRCA 4WKVA 1E3AA 1OR0A 4HSRA 1KEHA 2WYCA 4PEMA 4YFAA 1PNMA 1AJNA 1GK9A 3JTRA 1AI7A 1FXHA 1JX9A 1AJQA 3JTQA 4YF9A 1GK1A 2WYDA
chains in the Genus database with same CATH superfamily
1GM9A 4E57A 1K5SA 3L91A 3L94A 4K2GA 4WKTA 1FM2A 4E55A 1JVZA 1GKFA 3FGTA 4WKSA 1CP9A 1GM7A 2WYEA 1PNLA 1K5QA 3ML0A 4BWCA 1FXVA 1PNKA 4PELA 3SRBA 4YFBA 1K7DA 2AE4A 2AE3A 4HSTA 1H2GA 3K3WA 4WKUA 3S8RA 2WYBA 1GHDA 1GM8A 2AE5A 3FGRA 1JW0A 4E56A 1GK0A 1AI5A 3SRAA 4BTHA 1AI6A 4M1JA 1AI4A 1AJPA 1KECA 2ADVA 4K2FA 3SRCA 4WKVA 1E3AA 1OR0A 4HSRA 1KEHA 2WYCA 4PEMA 4YFAA 1PNMA 1AJNA 1GK9A 3JTRA 1AI7A 1FXHA 1JX9A 1AJQA 3JTQA 4YF9A 1GK1A 2WYDA
chains in the Genus database with same CATH topology
1GM9A 4E57A 1K5SA 3L91A 3L94A 4K2GA 4WKTA 1FM2A 4E55A 1JVZA 1GKFA 4WKSA 1CP9A 1GM7A 2WYEA 1PNLA 1K5QA 3ML0A 1FXVA 1PNKA 4PELA 3SRBA 4YFBA 1K7DA 2AE4A 2AE3A 4HSTA 1H2GA 3K3WA 4WKUA 3S8RA 2WYBA 1GHDA 1GM8A 2AE5A 4E56A 1JW0A 1GK0A 1AI5A 3SRAA 4BTHA 1AI6A 4M1JA 1AI4A 1AJPA 1KECA 2ADVA 4K2FA 3SRCA 4WKVA 1E3AA 1OR0A 4HSRA 1KEHA 2WYCA 4PEMA 4YFAA 1PNMA 1AJNA 1GK9A 3JTRA 1AI7A 1FXHA 1JX9A 1AJQA 3JTQA 4YF9A 1GK1A 2WYDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GM9 A;  4E57 A;  1K5S A;  3L91 A;  3L94 A;  4K2G A;  4WKT A;  1FM2 A;  4E55 A;  1JVZ A;  1GKF A;  4WKS A;  1CP9 A;  1GM7 A;  2WYE A;  1PNL A;  1K5Q A;  3ML0 A;  1FXV A;  1PNK A;  4PEL A;  3SRB A;  4YFB A;  1K7D A;  2AE4 A;  2AE3 A;  4HST A;  1H2G A;  3K3W A;  4WKU A;  3S8R A;  2WYB A;  1GHD A;  1GM8 A;  2AE5 A;  4E56 A;  1JW0 A;  1GK0 A;  1AI5 A;  3SRA A;  4BTH A;  1AI6 A;  4M1J A;  1AI4 A;  1AJP A;  1KEC A;  2ADV A;  4K2F A;  3SRC A;  4WKV A;  1E3A A;  1OR0 A;  4HSR A;  1KEH A;  2WYC A;  4PEM A;  4YFA A;  1PNM A;  1AJN A;  1GK9 A;  3JTR A;  1AI7 A;  1FXH A;  1JX9 A;  1AJQ A;  3JTQ A;  4YF9 A;  1GK1 A;  2WYD A; 
#chains in the Genus database with same CATH topology
 1GM9 A;  4E57 A;  1K5S A;  3L91 A;  3L94 A;  4K2G A;  4WKT A;  1FM2 A;  4E55 A;  1JVZ A;  1GKF A;  3FGT A;  4WKS A;  1CP9 A;  1GM7 A;  2WYE A;  1PNL A;  1K5Q A;  3ML0 A;  4BWC A;  1FXV A;  1PNK A;  4PEL A;  3SRB A;  4YFB A;  1K7D A;  2AE4 A;  2AE3 A;  4HST A;  1H2G A;  3K3W A;  4WKU A;  3S8R A;  2WYB A;  1GHD A;  1GM8 A;  2AE5 A;  3FGR A;  1JW0 A;  4E56 A;  1GK0 A;  1AI5 A;  3SRA A;  4BTH A;  1AI6 A;  4M1J A;  1AI4 A;  1AJP A;  1KEC A;  2ADV A;  4K2F A;  3SRC A;  4WKV A;  1E3A A;  1OR0 A;  4HSR A;  1KEH A;  2WYC A;  4PEM A;  4YFA A;  1PNM A;  1AJN A;  1GK9 A;  3JTR A;  1AI7 A;  1FXH A;  1JX9 A;  1AJQ A;  3JTQ A;  4YF9 A;  1GK1 A;  2WYD A; 
#chains in the Genus database with same CATH homology
 1GM9 A;  4E57 A;  1K5S A;  3L91 A;  3L94 A;  4K2G A;  4WKT A;  1FM2 A;  4E55 A;  1JVZ A;  1GKF A;  4WKS A;  1CP9 A;  1GM7 A;  2WYE A;  1PNL A;  1K5Q A;  3ML0 A;  1FXV A;  1PNK A;  4PEL A;  3SRB A;  4YFB A;  1K7D A;  2AE4 A;  2AE3 A;  4HST A;  1H2G A;  3K3W A;  4WKU A;  3S8R A;  2WYB A;  1GHD A;  1GM8 A;  2AE5 A;  4E56 A;  1JW0 A;  1GK0 A;  1AI5 A;  3SRA A;  4BTH A;  1AI6 A;  4M1J A;  1AI4 A;  1AJP A;  1KEC A;  2ADV A;  4K2F A;  3SRC A;  4WKV A;  1E3A A;  1OR0 A;  4HSR A;  1KEH A;  2WYC A;  4PEM A;  4YFA A;  1PNM A;  1AJN A;  1GK9 A;  3JTR A;  1AI7 A;  1FXH A;  1JX9 A;  1AJQ A;  3JTQ A;  4YF9 A;  1GK1 A;  2WYD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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