2WYDA

The quorum quenching n-acyl homoserine lactone acylase pvdq in complex with dodecanoic acid
Total Genus 55

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
sequence length
164
structure length
164
Chain Sequence
TGLAADIRWTAYGVPHIRAKDERGLGYGIGYAYARDNACLLAEEIVTARGERARYFGSEGKSSAELDNLPSDIFYAWLNQPEALQAFWQAQTPAVRQLLEGYAAGFNRFLREADGKTTSCLGQPWLRAIATDDLLRLTRRLLVEGGVGQFADALVAAAPPGAEK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S2 (19-23)AH1 (27-54)TI1 (62-65)AH6 (136-148)AH3 (73-84)TI2 (67-70)O1 (44-125)AH5 (98-117)TI5 (128-131)TI3 (120-123)TI4 (123-126)TII2 (125-128)AH7 (156-161)EMPTYS1 (11-15)AH2 (56-61)AH4 (86-95)3H1 (152-155)TI6 (148-151)TII1 (15-18)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Pseudomonas aeruginosa
publication title The Quorum-Quenching N-Acyl Homoserine Lactone Acylase Pvdq is an Ntn-Hydrolase with an Unusual Substrate-Binding Pocket
pubmed doi rcsb
molecule keywords ACYL-HOMOSERINE LACTONE ACYLASE PVDQ SUBUNIT ALPHA
total genus 55
structure length 164
sequence length 164
ec nomenclature ec 3.5.1.97: Acyl-homoserine-lactone acylase.
pdb deposition date 2009-11-16
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.439.10 Mainly Alpha Orthogonal Bundle Penicillin Amidohydrolase; domain 1 Penicillin Amidohydrolase, domain 1 2wydA00
3JTQA 4HSRA 4M1JA 4BTHA 3SRBA 1GK9A 3SRCA 1GK0A 1OR0A 1GM8A 2ADVA 1PNKA 3JTRA 1K7DA 2WYDA 4YFAA 1AJNA 1FM2A 1GHDA 1FXHA 3S8RA 4E55A 1KECA 4K2GA 1CP9A 1GK1A 4WKTA 1AJQA 2AE4A 1K5SA 4WKUA 3L91A 4WKVA 4E56A 2AE3A 3L94A 2WYCA 4E57A 4K2FA 4HSTA 4YF9A 1JX9A 2AE5A 1H2GA 1GM9A 1AI7A 1K5QA 4WKSA 3K3WA 1E3AA 3ML0A 1PNLA 3SRAA 1GM7A 1KEHA 1JVZA 2WYEA 1AJPA 1PNMA 4PEMA 1AI4A 1AI6A 1JW0A 1GKFA 4PELA 4YFBA 2WYBA 1AI5A 1FXVA
chains in the Genus database with same CATH superfamily
3JTQA 4HSRA 4M1JA 4BTHA 3FGTA 3SRBA 1GK9A 3SRCA 1GK0A 1OR0A 1GM8A 2ADVA 1PNKA 3JTRA 1K7DA 2WYDA 4YFAA 1AJNA 1FM2A 1GHDA 3FGRA 1FXHA 3S8RA 4E55A 1KECA 4K2GA 1CP9A 1GK1A 4WKTA 1AJQA 2AE4A 1K5SA 4WKUA 3L91A 4WKVA 4E56A 2AE3A 3L94A 2WYCA 4E57A 4K2FA 4BWCA 4HSTA 4YF9A 1JX9A 2AE5A 1H2GA 1GM9A 1AI7A 1K5QA 4WKSA 3K3WA 1E3AA 3ML0A 1PNLA 3SRAA 1GM7A 1KEHA 1JVZA 2WYEA 1AJPA 1PNMA 4PEMA 1AI4A 1AI6A 1JW0A 1GKFA 4PELA 4YFBA 2WYBA 1AI5A 1FXVA
chains in the Genus database with same CATH topology
3JTQA 4HSRA 4M1JA 4BTHA 3SRBA 1GK9A 3SRCA 1GK0A 1OR0A 1GM8A 2ADVA 1PNKA 3JTRA 1K7DA 2WYDA 4YFAA 1AJNA 1FM2A 1GHDA 1FXHA 3S8RA 4E55A 1KECA 4K2GA 1CP9A 1GK1A 4WKTA 1AJQA 2AE4A 1K5SA 4WKUA 3L91A 4WKVA 4E56A 2AE3A 3L94A 2WYCA 4E57A 4K2FA 4HSTA 4YF9A 1JX9A 2AE5A 1H2GA 1GM9A 1AI7A 1K5QA 4WKSA 3K3WA 1E3AA 3ML0A 1PNLA 3SRAA 1GM7A 1KEHA 1JVZA 2WYEA 1AJPA 1PNMA 4PEMA 1AI4A 1AI6A 1JW0A 1GKFA 4PELA 4YFBA 2WYBA 1AI5A 1FXVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3JTQ A;  4HSR A;  4M1J A;  4BTH A;  3SRB A;  1GK9 A;  3SRC A;  1GK0 A;  1OR0 A;  1GM8 A;  2ADV A;  1PNK A;  3JTR A;  1K7D A;  2WYD A;  4YFA A;  1AJN A;  1FM2 A;  1GHD A;  1FXH A;  3S8R A;  4E55 A;  1KEC A;  4K2G A;  1CP9 A;  1GK1 A;  4WKT A;  1AJQ A;  2AE4 A;  1K5S A;  4WKU A;  3L91 A;  4WKV A;  4E56 A;  2AE3 A;  3L94 A;  2WYC A;  4E57 A;  4K2F A;  4HST A;  4YF9 A;  1JX9 A;  2AE5 A;  1H2G A;  1GM9 A;  1AI7 A;  1K5Q A;  4WKS A;  3K3W A;  1E3A A;  3ML0 A;  1PNL A;  3SRA A;  1GM7 A;  1KEH A;  1JVZ A;  2WYE A;  1AJP A;  1PNM A;  4PEM A;  1AI4 A;  1AI6 A;  1JW0 A;  1GKF A;  4PEL A;  4YFB A;  2WYB A;  1AI5 A;  1FXV A; 
#chains in the Genus database with same CATH topology
 3JTQ A;  4HSR A;  4M1J A;  4BTH A;  3FGT A;  3SRB A;  1GK9 A;  3SRC A;  1GK0 A;  1OR0 A;  1GM8 A;  2ADV A;  1PNK A;  3JTR A;  1K7D A;  2WYD A;  4YFA A;  1AJN A;  1FM2 A;  1GHD A;  3FGR A;  1FXH A;  3S8R A;  4E55 A;  1KEC A;  4K2G A;  1CP9 A;  1GK1 A;  4WKT A;  1AJQ A;  2AE4 A;  1K5S A;  4WKU A;  3L91 A;  4WKV A;  4E56 A;  2AE3 A;  3L94 A;  2WYC A;  4E57 A;  4K2F A;  4BWC A;  4HST A;  4YF9 A;  1JX9 A;  2AE5 A;  1H2G A;  1GM9 A;  1AI7 A;  1K5Q A;  4WKS A;  3K3W A;  1E3A A;  3ML0 A;  1PNL A;  3SRA A;  1GM7 A;  1KEH A;  1JVZ A;  2WYE A;  1AJP A;  1PNM A;  4PEM A;  1AI4 A;  1AI6 A;  1JW0 A;  1GKF A;  4PEL A;  4YFB A;  2WYB A;  1AI5 A;  1FXV A; 
#chains in the Genus database with same CATH homology
 3JTQ A;  4HSR A;  4M1J A;  4BTH A;  3SRB A;  1GK9 A;  3SRC A;  1GK0 A;  1OR0 A;  1GM8 A;  2ADV A;  1PNK A;  3JTR A;  1K7D A;  2WYD A;  4YFA A;  1AJN A;  1FM2 A;  1GHD A;  1FXH A;  3S8R A;  4E55 A;  1KEC A;  4K2G A;  1CP9 A;  1GK1 A;  4WKT A;  1AJQ A;  2AE4 A;  1K5S A;  4WKU A;  3L91 A;  4WKV A;  4E56 A;  2AE3 A;  3L94 A;  2WYC A;  4E57 A;  4K2F A;  4HST A;  4YF9 A;  1JX9 A;  2AE5 A;  1H2G A;  1GM9 A;  1AI7 A;  1K5Q A;  4WKS A;  3K3W A;  1E3A A;  3ML0 A;  1PNL A;  3SRA A;  1GM7 A;  1KEH A;  1JVZ A;  2WYE A;  1AJP A;  1PNM A;  4PEM A;  1AI4 A;  1AI6 A;  1JW0 A;  1GKF A;  4PEL A;  4YFB A;  2WYB A;  1AI5 A;  1FXV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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