3JTQA

Mutations in cephalosporin acylase affecting stability and autoproteolysis
Total Genus 50

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
154
structure length
154
Chain Sequence
QAPIAAYKPRSNEILWDGYGVPHIYGVDAPSAFYGYGWAQARSHGDNILRLYGEARGKGAEYWGPDYEQTTVWLLTNGVPERAQQWYAQQSPDFRANLDAFAAGINAYAQQNPDDISPDVRQVLPVSGADVVAHAHRLMNFLYVASPGRTLGEG
2040608010012014014012010080604020
01020304050Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS2 (27-31)TI'1 (23-26)TIV1 (32-35)TIV3 (35-38)TI'2 (36-39)TI'3 (37-40)TIV2 (34-37)TIV4 (38-41)TIV5 (39-42)TIV6 (40-43)TI'4 (41-44)3H1 (45-47)TI'5 (47-50)TI'20 (114-117)TIV8 (48-51)TI'6 (51-54)TIV10 (52-55)3H2 (58-62)TIV9 (50-53)TIV12 (54-57)TIV11 (53-56)3H8 (124-129)TIV32 (129-132)TIV14 (64-67)3H3 (71-73)TI'7 (65-68)TI'8 (66-69)TI'9 (73-76)TIV15 (67-70)TI'11 (76-79)TIV16 (75-78)3H4 (81-83)TI'10 (74-77)TI'12 (77-80)TIV17 (84-87)TI'22 (133-136)TIV18 (85-88)TIV19 (86-89)3H5 (93-95)TIV22 (97-100)TI'14 (87-90)TIV21 (89-92)TI'16 (98-101)TIV23 (99-102)TI'17 (100-103)TIV24 (101-104)TIV25 (102-105)TIV26 (103-106)TIV27 (104-107)3H6 (108-110)TIV29 (110-113)TIV30 (112-115)TI'19 (113-116)3H7 (119-121)TIV33 (134-137)TIV34 (135-138)TI'23 (136-139)TI'24 (137-140)TIV35 (138-141)TIV37 (140-143)TIV38 (141-144)PH1 (145-149)TIV42 (152-155)TIV20 (88-91)TIV41 (149-152)S1 (19-23)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Pseudomonas sp.
publication title Structural features of cephalosporin acylase reveal the basis of autocatalytic activation.
pubmed doi rcsb
molecule keywords Glutaryl 7-aminocephalosporanic acid acylase
total genus 50
structure length 154
sequence length 154
ec nomenclature ec 3.5.1.93: Glutaryl-7-aminocephalosporanic-acid acylase.
pdb deposition date 2009-09-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.439.10 Mainly Alpha Orthogonal Bundle Penicillin Amidohydrolase; domain 1 Penicillin Amidohydrolase, domain 1 3jtqA00
4HSTA 2AE4A 4WKUA 4YF9A 2WYCA 1JX9A 1FM2A 1E3AA 1JVZA 3JTQA 4YFAA 1AJQA 4E56A 1PNKA 4M1JA 1FXHA 1K5SA 1KECA 1GK0A 4WKSA 2WYEA 4HSRA 1PNLA 4BTHA 3SRCA 1AI7A 1GKFA 2WYBA 1JW0A 1K7DA 2ADVA 3L91A 4WKVA 1AI6A 1GK9A 4E55A 1AI5A 1GK1A 4E57A 1H2GA 1GM7A 1AJNA 4WKTA 3S8RA 3SRBA 1AJPA 3K3WA 1CP9A 1GM9A 3ML0A 4K2FA 1PNMA 4PELA 3SRAA 1AI4A 2AE3A 3L94A 1OR0A 1KEHA 1FXVA 2WYDA 1GM8A 3JTRA 2AE5A 4K2GA 1GHDA 1K5QA 4YFBA 4PEMA
chains in the Genus database with same CATH superfamily
4HSTA 2AE4A 4WKUA 4YF9A 2WYCA 1JX9A 1FM2A 3FGRA 1E3AA 1JVZA 3JTQA 4YFAA 1AJQA 4E56A 1PNKA 4M1JA 1FXHA 1K5SA 1KECA 4BWCA 1GK0A 4WKSA 2WYEA 4HSRA 1PNLA 4BTHA 3SRCA 1AI7A 1GKFA 2WYBA 1JW0A 1K7DA 2ADVA 3L91A 4WKVA 1AI6A 1GK9A 4E55A 1AI5A 1GK1A 4E57A 1H2GA 1GM7A 1AJNA 4WKTA 3S8RA 3SRBA 1AJPA 3K3WA 1CP9A 1GM9A 3ML0A 4K2FA 1PNMA 4PELA 3SRAA 1AI4A 3FGTA 2AE3A 3L94A 1OR0A 1KEHA 1FXVA 2WYDA 1GM8A 3JTRA 2AE5A 4K2GA 1GHDA 1K5QA 4YFBA 4PEMA
chains in the Genus database with same CATH topology
4HSTA 2AE4A 4WKUA 4YF9A 2WYCA 1JX9A 1FM2A 1E3AA 1JVZA 3JTQA 4YFAA 1AJQA 4E56A 1PNKA 4M1JA 1FXHA 1K5SA 1KECA 1GK0A 4WKSA 2WYEA 4HSRA 1PNLA 4BTHA 3SRCA 1AI7A 1GKFA 2WYBA 1JW0A 1K7DA 2ADVA 3L91A 4WKVA 1AI6A 1GK9A 4E55A 1AI5A 1GK1A 4E57A 1H2GA 1GM7A 1AJNA 4WKTA 3S8RA 3SRBA 1AJPA 3K3WA 1CP9A 1GM9A 3ML0A 4K2FA 1PNMA 4PELA 3SRAA 1AI4A 2AE3A 3L94A 1OR0A 1KEHA 1FXVA 2WYDA 1GM8A 3JTRA 2AE5A 4K2GA 1GHDA 1K5QA 4YFBA 4PEMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HST A;  2AE4 A;  4WKU A;  4YF9 A;  2WYC A;  1JX9 A;  1FM2 A;  1E3A A;  1JVZ A;  3JTQ A;  4YFA A;  1AJQ A;  4E56 A;  1PNK A;  4M1J A;  1FXH A;  1K5S A;  1KEC A;  1GK0 A;  4WKS A;  2WYE A;  4HSR A;  1PNL A;  4BTH A;  3SRC A;  1AI7 A;  1GKF A;  2WYB A;  1JW0 A;  1K7D A;  2ADV A;  3L91 A;  4WKV A;  1AI6 A;  1GK9 A;  4E55 A;  1AI5 A;  1GK1 A;  4E57 A;  1H2G A;  1GM7 A;  1AJN A;  4WKT A;  3S8R A;  3SRB A;  1AJP A;  3K3W A;  1CP9 A;  1GM9 A;  3ML0 A;  4K2F A;  1PNM A;  4PEL A;  3SRA A;  1AI4 A;  2AE3 A;  3L94 A;  1OR0 A;  1KEH A;  1FXV A;  2WYD A;  1GM8 A;  3JTR A;  2AE5 A;  4K2G A;  1GHD A;  1K5Q A;  4YFB A;  4PEM A; 
#chains in the Genus database with same CATH topology
 4HST A;  2AE4 A;  4WKU A;  4YF9 A;  2WYC A;  1JX9 A;  1FM2 A;  3FGR A;  1E3A A;  1JVZ A;  3JTQ A;  4YFA A;  1AJQ A;  4E56 A;  1PNK A;  4M1J A;  1FXH A;  1K5S A;  1KEC A;  4BWC A;  1GK0 A;  4WKS A;  2WYE A;  4HSR A;  1PNL A;  4BTH A;  3SRC A;  1AI7 A;  1GKF A;  2WYB A;  1JW0 A;  1K7D A;  2ADV A;  3L91 A;  4WKV A;  1AI6 A;  1GK9 A;  4E55 A;  1AI5 A;  1GK1 A;  4E57 A;  1H2G A;  1GM7 A;  1AJN A;  4WKT A;  3S8R A;  3SRB A;  1AJP A;  3K3W A;  1CP9 A;  1GM9 A;  3ML0 A;  4K2F A;  1PNM A;  4PEL A;  3SRA A;  1AI4 A;  3FGT A;  2AE3 A;  3L94 A;  1OR0 A;  1KEH A;  1FXV A;  2WYD A;  1GM8 A;  3JTR A;  2AE5 A;  4K2G A;  1GHD A;  1K5Q A;  4YFB A;  4PEM A; 
#chains in the Genus database with same CATH homology
 4HST A;  2AE4 A;  4WKU A;  4YF9 A;  2WYC A;  1JX9 A;  1FM2 A;  1E3A A;  1JVZ A;  3JTQ A;  4YFA A;  1AJQ A;  4E56 A;  1PNK A;  4M1J A;  1FXH A;  1K5S A;  1KEC A;  1GK0 A;  4WKS A;  2WYE A;  4HSR A;  1PNL A;  4BTH A;  3SRC A;  1AI7 A;  1GKF A;  2WYB A;  1JW0 A;  1K7D A;  2ADV A;  3L91 A;  4WKV A;  1AI6 A;  1GK9 A;  4E55 A;  1AI5 A;  1GK1 A;  4E57 A;  1H2G A;  1GM7 A;  1AJN A;  4WKT A;  3S8R A;  3SRB A;  1AJP A;  3K3W A;  1CP9 A;  1GM9 A;  3ML0 A;  4K2F A;  1PNM A;  4PEL A;  3SRA A;  1AI4 A;  2AE3 A;  3L94 A;  1OR0 A;  1KEH A;  1FXV A;  2WYD A;  1GM8 A;  3JTR A;  2AE5 A;  4K2G A;  1GHD A;  1K5Q A;  4YFB A;  4PEM A; 
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