3KQJA

Mura binary complex with udp-n-acetylglucosamine
Total Genus 141
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
141
sequence length
419
structure length
418
Chain Sequence
MDKFRVQGPTKLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDVDTSMKLLSQLGAKVERGSVHIDARDVNVFCAPYDLVKTMRASIWALGPLVARFGQGQVSLPGGCTIGARPVDLHISGLEQLGATIKLEEGYVKASVDGRLKGAHIVMDKVSVGATVTIMCAATLAEGTTIIENAAREPEIVDTANFLITLGAKISGQGTDRIVIEGVERLGGGVYRVLPDRIETGTFLVAAAISRGKIICRNAQPDTLDAVLAKLRDAGADIEVGEDWISLDMHGKRPKAVNVRTAPHPAFPTDMQAQFTLLNLVAEGTGFITETVFENRFMHVPELSRMGAHAEIESNTVICHGVEKLSGAQVMATDLRASASLVLAGCIAEGTTVVDRIYHIDRGYERIEDKLRALGANIERVKGE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The Natural Product Antibiotic Terreic Acid is a Mechanism-Based Inhibitor of the Bacterial Enzyme MurA in vitro but not in vivo.
rcsb
molecule tags Transferase
source organism Escherichia coli
molecule keywords UDP-N-acetylglucosamine 1-carboxyvinyltransferase
total genus 141
structure length 418
sequence length 419
ec nomenclature ec 2.5.1.7: UDP-N-acetylglucosamine 1-carboxyvinyltransferase.
pdb deposition date 2009-11-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00275 EPSP_synthase EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.65.10.10 Alpha Beta Alpha-beta prism UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain Enolpyruvate transferase domain 3kqjA02
3.65.10.10 Alpha Beta Alpha-beta prism UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain Enolpyruvate transferase domain 3kqjA01
5BQ2A 4GFPA 1NAWA 3FK1A 4R7UA 1G6SA 2PQDA 4E7DA 2O0ZA 1UAEA 3ISSA 4ZNDA 4EIIA 3ROIA 3UPKA 2O0XA 3KQJA 3SPBA 2PQ9A 2AAYA 3SWEA 2QFTA 2GGAA 3ZH4A 3V4TA 3RMTA 1X8RA 2O0DA 4E7CA 3SWDA 2O15A 2QFUA 2YVWA 1P89A 2RL2A 3KR6A 2PQCA 3VCYA 2Z2CA 1X8TA 1A2NA 3ZH3A 3FJXA 4E7EA 3SU9A 3NVSA 1RF5A 2QFQA 4E7GA 4N3PA 1G6TA 3SG1A 2AA9A 4E7FA 1RF4A 2O0BA 2PQBA 1MI4A 1P88A 3SWQA 5BUFA 2GGDA 2O0EA 2QFSA 3KQAA 2BJBA 5U4HA 1RF6A 1RYWA 3LTHA 3R38A 1EJCA 3SLHA 1Q36A 2RL1A 4EGRA 4E7BA 3TR1A 3TI2A 1Q3GA 2GG4A 4FQDA 1YBGA 3SWAA 1EYNA 1DLGA 3FK0A 2GG6A 3V5VA 3SWGA 1EJDA 3SWIA 5BS5A 3FJZA
chains in the Genus database with same CATH superfamily
5BQ2A 4GFPA 1NAWA 3FK1A 4R7UA 1G6SA 2PQDA 3TV1A 4E7DA 2O0ZA 1UAEA 3ISSA 4ZNDA 4EIIA 3TUXA 3ROIA 4O8JA 3UPKA 2O0XA 3KQJA 4O89A 3SPBA 2PQ9A 2AAYA 3SWEA 2QFTA 2GGAA 3ZH4A 3V4TA 3RMTA 1X8RA 2O0DA 1QMHA 4E7CA 3SWDA 2O15A 2QFUA 2YVWA 3TUTA 1P89A 3PQVA 2RL2A 3KGDA 3KR6A 2PQCA 3VCYA 2Z2CA 1X8TA 1A2NA 3ZH3A 3FJXA 4E7EA 3SU9A 3NVSA 1RF5A 2QFQA 4E7GA 4N3PA 1G6TA 3SG1A 3TW3A 2AA9A 4E7FA 1RF4A 2O0BA 2PQBA 1MI4A 1P88A 3SWQA 5BUFA 4CLQA 2GGDA 2O0EA 2QFSA 3KQAA 2BJBA 5U4HA 1RF6A 1RYWA 3LTHA 3R38A 1QMIA 1EJCA 3SLHA 1Q36A 2RL1A 4EGRA 4E7BA 3TR1A 3TI2A 1Q3GA 2GG4A 4FQDA 1YBGA 3SWAA 1EYNA 1DLGA 3FK0A 2GG6A 3V5VA 3SWGA 1EJDA 3SWIA 5BS5A 3FJZA
chains in the Genus database with same CATH topology
5BQ2A 4GFPA 1NAWA 3FK1A 4R7UA 1G6SA 2PQDA 4E7DA 2O0ZA 1UAEA 3ISSA 4ZNDA 4EIIA 3ROIA 3UPKA 2O0XA 3KQJA 3SPBA 2PQ9A 2AAYA 3SWEA 2QFTA 2GGAA 3ZH4A 3V4TA 3RMTA 1X8RA 2O0DA 4E7CA 3SWDA 2O15A 2QFUA 2YVWA 1P89A 2RL2A 3KR6A 2PQCA 3VCYA 2Z2CA 1X8TA 1A2NA 3ZH3A 3FJXA 4E7EA 3SU9A 3NVSA 1RF5A 2QFQA 4E7GA 4N3PA 1G6TA 3SG1A 2AA9A 4E7FA 1RF4A 2O0BA 2PQBA 1MI4A 1P88A 3SWQA 5BUFA 2GGDA 2O0EA 2QFSA 3KQAA 2BJBA 5U4HA 1RF6A 1RYWA 3LTHA 3R38A 1EJCA 3SLHA 1Q36A 2RL1A 4EGRA 4E7BA 3TR1A 3TI2A 1Q3GA 2GG4A 4FQDA 1YBGA 3SWAA 1EYNA 1DLGA 3FK0A 2GG6A 3V5VA 3SWGA 1EJDA 3SWIA 5BS5A 3FJZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5BQ2 A;  4GFP A;  1NAW A;  3FK1 A;  4R7U A;  1G6S A;  2PQD A;  4E7D A;  2O0Z A;  1UAE A;  3ISS A;  4ZND A;  4EII A;  3ROI A;  3UPK A;  2O0X A;  3KQJ A;  3SPB A;  2PQ9 A;  2AAY A;  3SWE A;  2QFT A;  2GGA A;  3ZH4 A;  3V4T A;  3RMT A;  1X8R A;  2O0D A;  4E7C A;  3SWD A;  2O15 A;  2QFU A;  2YVW A;  1P89 A;  2RL2 A;  3KR6 A;  2PQC A;  3VCY A;  2Z2C A;  1X8T A;  1A2N A;  3ZH3 A;  3FJX A;  4E7E A;  3SU9 A;  3NVS A;  1RF5 A;  2QFQ A;  4E7G A;  4N3P A;  1G6T A;  3SG1 A;  2AA9 A;  4E7F A;  1RF4 A;  2O0B A;  2PQB A;  1MI4 A;  1P88 A;  3SWQ A;  5BUF A;  2GGD A;  2O0E A;  2QFS A;  3KQA A;  2BJB A;  5U4H A;  1RF6 A;  1RYW A;  3LTH A;  3R38 A;  1EJC A;  3SLH A;  1Q36 A;  2RL1 A;  4EGR A;  4E7B A;  3TR1 A;  3TI2 A;  1Q3G A;  2GG4 A;  4FQD A;  1YBG A;  3SWA A;  1EYN A;  1DLG A;  3FK0 A;  2GG6 A;  3V5V A;  3SWG A;  1EJD A;  3SWI A;  5BS5 A;  3FJZ A; 
#chains in the Genus database with same CATH topology
 5BQ2 A;  4GFP A;  1NAW A;  3FK1 A;  4R7U A;  1G6S A;  2PQD A;  3TV1 A;  4E7D A;  2O0Z A;  1UAE A;  3ISS A;  4ZND A;  4EII A;  3TUX A;  3ROI A;  4O8J A;  3UPK A;  2O0X A;  3KQJ A;  4O89 A;  3SPB A;  2PQ9 A;  2AAY A;  3SWE A;  2QFT A;  2GGA A;  3ZH4 A;  3V4T A;  3RMT A;  1X8R A;  2O0D A;  1QMH A;  4E7C A;  3SWD A;  2O15 A;  2QFU A;  2YVW A;  3TUT A;  1P89 A;  3PQV A;  2RL2 A;  3KGD A;  3KR6 A;  2PQC A;  3VCY A;  2Z2C A;  1X8T A;  1A2N A;  3ZH3 A;  3FJX A;  4E7E A;  3SU9 A;  3NVS A;  1RF5 A;  2QFQ A;  4E7G A;  4N3P A;  1G6T A;  3SG1 A;  3TW3 A;  2AA9 A;  4E7F A;  1RF4 A;  2O0B A;  2PQB A;  1MI4 A;  1P88 A;  3SWQ A;  5BUF A;  4CLQ A;  2GGD A;  2O0E A;  2QFS A;  3KQA A;  2BJB A;  5U4H A;  1RF6 A;  1RYW A;  3LTH A;  3R38 A;  1QMI A;  1EJC A;  3SLH A;  1Q36 A;  2RL1 A;  4EGR A;  4E7B A;  3TR1 A;  3TI2 A;  1Q3G A;  2GG4 A;  4FQD A;  1YBG A;  3SWA A;  1EYN A;  1DLG A;  3FK0 A;  2GG6 A;  3V5V A;  3SWG A;  1EJD A;  3SWI A;  5BS5 A;  3FJZ A; 
#chains in the Genus database with same CATH homology
 5BQ2 A;  4GFP A;  1NAW A;  3FK1 A;  4R7U A;  1G6S A;  2PQD A;  4E7D A;  2O0Z A;  1UAE A;  3ISS A;  4ZND A;  4EII A;  3ROI A;  3UPK A;  2O0X A;  3KQJ A;  3SPB A;  2PQ9 A;  2AAY A;  3SWE A;  2QFT A;  2GGA A;  3ZH4 A;  3V4T A;  3RMT A;  1X8R A;  2O0D A;  4E7C A;  3SWD A;  2O15 A;  2QFU A;  2YVW A;  1P89 A;  2RL2 A;  3KR6 A;  2PQC A;  3VCY A;  2Z2C A;  1X8T A;  1A2N A;  3ZH3 A;  3FJX A;  4E7E A;  3SU9 A;  3NVS A;  1RF5 A;  2QFQ A;  4E7G A;  4N3P A;  1G6T A;  3SG1 A;  2AA9 A;  4E7F A;  1RF4 A;  2O0B A;  2PQB A;  1MI4 A;  1P88 A;  3SWQ A;  5BUF A;  2GGD A;  2O0E A;  2QFS A;  3KQA A;  2BJB A;  5U4H A;  1RF6 A;  1RYW A;  3LTH A;  3R38 A;  1EJC A;  3SLH A;  1Q36 A;  2RL1 A;  4EGR A;  4E7B A;  3TR1 A;  3TI2 A;  1Q3G A;  2GG4 A;  4FQD A;  1YBG A;  3SWA A;  1EYN A;  1DLG A;  3FK0 A;  2GG6 A;  3V5V A;  3SWG A;  1EJD A;  3SWI A;  5BS5 A;  3FJZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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