3L91A

Structure of pseudomonas aerugionsa pvdq bound to octanoate
Total Genus 55

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
sequence length
164
structure length
164
Chain Sequence
TGLAADIRWTAYGVPHIRAKDERGLGYGIGYAYARDNACLLAEEIVTARGERARYFGSEGKSSAELDNLPSDIFYAWLNQPEALQAFWQAQTPAVRQLLEGYAAGFNRFLREADGKTTSCLGQPWLRAIATDDLLRLTRRLLVEGGVGQFADALVAAAPPGAEK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH3 (96-107)EMPTYO1 (67-148)AH4 (109-118)S1 (34-38)TII1 (38-41)S2 (42-46)AH5 (121-140)AH2 (79-84)AH1 (50-77)TI1 (85-88)TI2 (90-93)TI3 (143-146)TI5 (151-154)TII2 (148-151)AH6 (159-171)TI4 (146-149)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Pseudomonas aeruginosa
publication title Structural characterization and high-throughput screening of inhibitors of PvdQ, an NTN hydrolase involved in pyoverdine synthesis.
pubmed doi rcsb
molecule keywords Acyl-homoserine lactone acylase pvdQ subunit alpha
total genus 55
structure length 164
sequence length 164
ec nomenclature ec 3.5.1.97: Acyl-homoserine-lactone acylase.
pdb deposition date 2010-01-04
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.439.10 Mainly Alpha Orthogonal Bundle Penicillin Amidohydrolase; domain 1 Penicillin Amidohydrolase, domain 1 3l91A00
1AJPA 1FXVA 3JTRA 3SRAA 4YFBA 2WYBA 3SRCA 3K3WA 1FM2A 1AI7A 1GM8A 3S8RA 1AJNA 4E57A 1PNMA 2AE3A 4HSRA 1JX9A 2WYDA 2ADVA 4BTHA 1GK9A 1H2GA 3ML0A 3SRBA 2WYEA 4PEMA 1GHDA 1K5SA 1JW0A 1K5QA 4YFAA 1GM7A 4E56A 2WYCA 1GM9A 2AE5A 1FXHA 4K2FA 1KEHA 4HSTA 1PNKA 2AE4A 1GK0A 1AI6A 4K2GA 4E55A 3L91A 1K7DA 1AI5A 1PNLA 1AI4A 4WKTA 1GK1A 1AJQA 1OR0A 4M1JA 1CP9A 4YF9A 4PELA 3L94A 4WKVA 1GKFA 1JVZA 1KECA 4WKUA 1E3AA 3JTQA 4WKSA
chains in the Genus database with same CATH superfamily
1AJPA 1FXVA 3JTRA 3SRAA 4YFBA 2WYBA 3SRCA 3K3WA 1FM2A 1AI7A 1GM8A 3S8RA 1AJNA 4E57A 1PNMA 2AE3A 4HSRA 4BWCA 1JX9A 2WYDA 2ADVA 4BTHA 1GK9A 1H2GA 3ML0A 3SRBA 2WYEA 4PEMA 1GHDA 1K5SA 1JW0A 1K5QA 3FGRA 4YFAA 1GM7A 4E56A 2WYCA 1GM9A 2AE5A 1FXHA 4K2FA 1KEHA 4HSTA 1PNKA 2AE4A 1GK0A 1AI6A 4K2GA 4E55A 3L91A 1K7DA 1AI5A 1PNLA 1AI4A 4WKTA 1GK1A 1AJQA 1OR0A 4M1JA 1CP9A 4YF9A 4PELA 3L94A 3FGTA 4WKVA 1GKFA 1JVZA 1KECA 4WKUA 1E3AA 3JTQA 4WKSA
chains in the Genus database with same CATH topology
1AJPA 1FXVA 3JTRA 3SRAA 4YFBA 2WYBA 3SRCA 3K3WA 1FM2A 1AI7A 1GM8A 3S8RA 1AJNA 4E57A 1PNMA 2AE3A 4HSRA 1JX9A 2WYDA 2ADVA 4BTHA 1GK9A 1H2GA 3ML0A 3SRBA 2WYEA 4PEMA 1GHDA 1K5SA 1JW0A 1K5QA 4YFAA 1GM7A 4E56A 2WYCA 1GM9A 2AE5A 1FXHA 4K2FA 1KEHA 4HSTA 1PNKA 2AE4A 1GK0A 1AI6A 4K2GA 4E55A 3L91A 1K7DA 1AI5A 1PNLA 1AI4A 4WKTA 1GK1A 1AJQA 1OR0A 4M1JA 1CP9A 4YF9A 4PELA 3L94A 4WKVA 1GKFA 1JVZA 1KECA 4WKUA 1E3AA 3JTQA 4WKSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1AJP A;  1FXV A;  3JTR A;  3SRA A;  4YFB A;  2WYB A;  3SRC A;  3K3W A;  1FM2 A;  1AI7 A;  1GM8 A;  3S8R A;  1AJN A;  4E57 A;  1PNM A;  2AE3 A;  4HSR A;  1JX9 A;  2WYD A;  2ADV A;  4BTH A;  1GK9 A;  1H2G A;  3ML0 A;  3SRB A;  2WYE A;  4PEM A;  1GHD A;  1K5S A;  1JW0 A;  1K5Q A;  4YFA A;  1GM7 A;  4E56 A;  2WYC A;  1GM9 A;  2AE5 A;  1FXH A;  4K2F A;  1KEH A;  4HST A;  1PNK A;  2AE4 A;  1GK0 A;  1AI6 A;  4K2G A;  4E55 A;  3L91 A;  1K7D A;  1AI5 A;  1PNL A;  1AI4 A;  4WKT A;  1GK1 A;  1AJQ A;  1OR0 A;  4M1J A;  1CP9 A;  4YF9 A;  4PEL A;  3L94 A;  4WKV A;  1GKF A;  1JVZ A;  1KEC A;  4WKU A;  1E3A A;  3JTQ A;  4WKS A; 
#chains in the Genus database with same CATH topology
 1AJP A;  1FXV A;  3JTR A;  3SRA A;  4YFB A;  2WYB A;  3SRC A;  3K3W A;  1FM2 A;  1AI7 A;  1GM8 A;  3S8R A;  1AJN A;  4E57 A;  1PNM A;  2AE3 A;  4HSR A;  4BWC A;  1JX9 A;  2WYD A;  2ADV A;  4BTH A;  1GK9 A;  1H2G A;  3ML0 A;  3SRB A;  2WYE A;  4PEM A;  1GHD A;  1K5S A;  1JW0 A;  1K5Q A;  3FGR A;  4YFA A;  1GM7 A;  4E56 A;  2WYC A;  1GM9 A;  2AE5 A;  1FXH A;  4K2F A;  1KEH A;  4HST A;  1PNK A;  2AE4 A;  1GK0 A;  1AI6 A;  4K2G A;  4E55 A;  3L91 A;  1K7D A;  1AI5 A;  1PNL A;  1AI4 A;  4WKT A;  1GK1 A;  1AJQ A;  1OR0 A;  4M1J A;  1CP9 A;  4YF9 A;  4PEL A;  3L94 A;  3FGT A;  4WKV A;  1GKF A;  1JVZ A;  1KEC A;  4WKU A;  1E3A A;  3JTQ A;  4WKS A; 
#chains in the Genus database with same CATH homology
 1AJP A;  1FXV A;  3JTR A;  3SRA A;  4YFB A;  2WYB A;  3SRC A;  3K3W A;  1FM2 A;  1AI7 A;  1GM8 A;  3S8R A;  1AJN A;  4E57 A;  1PNM A;  2AE3 A;  4HSR A;  1JX9 A;  2WYD A;  2ADV A;  4BTH A;  1GK9 A;  1H2G A;  3ML0 A;  3SRB A;  2WYE A;  4PEM A;  1GHD A;  1K5S A;  1JW0 A;  1K5Q A;  4YFA A;  1GM7 A;  4E56 A;  2WYC A;  1GM9 A;  2AE5 A;  1FXH A;  4K2F A;  1KEH A;  4HST A;  1PNK A;  2AE4 A;  1GK0 A;  1AI6 A;  4K2G A;  4E55 A;  3L91 A;  1K7D A;  1AI5 A;  1PNL A;  1AI4 A;  4WKT A;  1GK1 A;  1AJQ A;  1OR0 A;  4M1J A;  1CP9 A;  4YF9 A;  4PEL A;  3L94 A;  4WKV A;  1GKF A;  1JVZ A;  1KEC A;  4WKU A;  1E3A A;  3JTQ A;  4WKS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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