3L94A

Structure of pvdq covalently acylated with myristate
Total Genus 52

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
sequence length
163
structure length
163
Chain Sequence
TGLAADIRWTAYGVPHIRAKDERGLGYGIGYAYARDNACLLAEEIVTARGERARYFGSEGKSSAELDNLPSDIFYAWLNQPEALQAFWQAQTPAVRQLLEGYAAGFNRFLREADGKTTSCLGQPWLRAIATDDLLRLTRRLLVEGGVGQFADALVAAAPPGAE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH3 (96-107)EMPTYO1 (67-148)S1 (34-38)AH4 (109-118)TII1 (38-41)S2 (42-46)AH5 (121-140)AH2 (79-84)AH1 (50-77)TI1 (85-88)TI2 (90-93)TI3 (143-146)TI5 (151-154)TII2 (148-151)AH6 (159-171)TI4 (146-149)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Pseudomonas aeruginosa
publication title Structural characterization and high-throughput screening of inhibitors of PvdQ, an NTN hydrolase involved in pyoverdine synthesis.
pubmed doi rcsb
molecule keywords Acyl-homoserine lactone acylase pvdQ subunit alpha
total genus 52
structure length 163
sequence length 163
ec nomenclature ec 3.5.1.97: Acyl-homoserine-lactone acylase.
pdb deposition date 2010-01-04
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.439.10 Mainly Alpha Orthogonal Bundle Penicillin Amidohydrolase; domain 1 Penicillin Amidohydrolase, domain 1 3l94A00
4BTHA 1AI6A 1PNKA 1GHDA 4YFAA 3SRBA 2WYBA 1AJNA 4PELA 1GM8A 2AE5A 3SRAA 1JW0A 2WYEA 1GKFA 3L91A 1AJPA 3JTQA 4K2FA 4WKUA 4M1JA 2WYDA 1GK9A 2AE4A 1FXVA 1OR0A 2WYCA 4YFBA 1GK1A 1JVZA 1CP9A 4HSTA 1GM7A 1GM9A 4PEMA 3S8RA 1H2GA 1KEHA 3K3WA 4WKVA 4E56A 1JX9A 3JTRA 4HSRA 3SRCA 1PNMA 1K5SA 1FXHA 3ML0A 3L94A 4E57A 1KECA 4WKSA 2ADVA 1AI4A 1FM2A 1GK0A 1K5QA 1AJQA 4E55A 4K2GA 1K7DA 1AI7A 4WKTA 1AI5A 1PNLA 1E3AA 2AE3A 4YF9A
chains in the Genus database with same CATH superfamily
4BTHA 1AI6A 1PNKA 1GHDA 4YFAA 3SRBA 2WYBA 1AJNA 4PELA 1GM8A 2AE5A 3SRAA 1JW0A 2WYEA 1GKFA 3L91A 1AJPA 3JTQA 4K2FA 4WKUA 4M1JA 2WYDA 1GK9A 2AE4A 1FXVA 1OR0A 2WYCA 4YFBA 1GK1A 1JVZA 1CP9A 4HSTA 1GM7A 1GM9A 4PEMA 3S8RA 1H2GA 1KEHA 3K3WA 4WKVA 4E56A 1JX9A 3JTRA 3FGTA 4HSRA 3SRCA 1PNMA 3FGRA 1K5SA 1FXHA 3ML0A 3L94A 4E57A 1KECA 4WKSA 2ADVA 1AI4A 1FM2A 1GK0A 1K5QA 1AJQA 4E55A 4K2GA 1K7DA 1AI7A 4WKTA 4BWCA 1AI5A 1PNLA 1E3AA 2AE3A 4YF9A
chains in the Genus database with same CATH topology
4BTHA 1AI6A 1PNKA 1GHDA 4YFAA 3SRBA 2WYBA 1AJNA 4PELA 1GM8A 2AE5A 3SRAA 1JW0A 2WYEA 1GKFA 3L91A 1AJPA 3JTQA 4K2FA 4WKUA 4M1JA 2WYDA 1GK9A 2AE4A 1FXVA 1OR0A 2WYCA 4YFBA 1GK1A 1JVZA 1CP9A 4HSTA 1GM7A 1GM9A 4PEMA 3S8RA 1H2GA 1KEHA 3K3WA 4WKVA 4E56A 1JX9A 3JTRA 4HSRA 3SRCA 1PNMA 1K5SA 1FXHA 3ML0A 3L94A 4E57A 1KECA 4WKSA 2ADVA 1AI4A 1FM2A 1GK0A 1K5QA 1AJQA 4E55A 4K2GA 1K7DA 1AI7A 4WKTA 1AI5A 1PNLA 1E3AA 2AE3A 4YF9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4BTH A;  1AI6 A;  1PNK A;  1GHD A;  4YFA A;  3SRB A;  2WYB A;  1AJN A;  4PEL A;  1GM8 A;  2AE5 A;  3SRA A;  1JW0 A;  2WYE A;  1GKF A;  3L91 A;  1AJP A;  3JTQ A;  4K2F A;  4WKU A;  4M1J A;  2WYD A;  1GK9 A;  2AE4 A;  1FXV A;  1OR0 A;  2WYC A;  4YFB A;  1GK1 A;  1JVZ A;  1CP9 A;  4HST A;  1GM7 A;  1GM9 A;  4PEM A;  3S8R A;  1H2G A;  1KEH A;  3K3W A;  4WKV A;  4E56 A;  1JX9 A;  3JTR A;  4HSR A;  3SRC A;  1PNM A;  1K5S A;  1FXH A;  3ML0 A;  3L94 A;  4E57 A;  1KEC A;  4WKS A;  2ADV A;  1AI4 A;  1FM2 A;  1GK0 A;  1K5Q A;  1AJQ A;  4E55 A;  4K2G A;  1K7D A;  1AI7 A;  4WKT A;  1AI5 A;  1PNL A;  1E3A A;  2AE3 A;  4YF9 A; 
#chains in the Genus database with same CATH topology
 4BTH A;  1AI6 A;  1PNK A;  1GHD A;  4YFA A;  3SRB A;  2WYB A;  1AJN A;  4PEL A;  1GM8 A;  2AE5 A;  3SRA A;  1JW0 A;  2WYE A;  1GKF A;  3L91 A;  1AJP A;  3JTQ A;  4K2F A;  4WKU A;  4M1J A;  2WYD A;  1GK9 A;  2AE4 A;  1FXV A;  1OR0 A;  2WYC A;  4YFB A;  1GK1 A;  1JVZ A;  1CP9 A;  4HST A;  1GM7 A;  1GM9 A;  4PEM A;  3S8R A;  1H2G A;  1KEH A;  3K3W A;  4WKV A;  4E56 A;  1JX9 A;  3JTR A;  3FGT A;  4HSR A;  3SRC A;  1PNM A;  3FGR A;  1K5S A;  1FXH A;  3ML0 A;  3L94 A;  4E57 A;  1KEC A;  4WKS A;  2ADV A;  1AI4 A;  1FM2 A;  1GK0 A;  1K5Q A;  1AJQ A;  4E55 A;  4K2G A;  1K7D A;  1AI7 A;  4WKT A;  4BWC A;  1AI5 A;  1PNL A;  1E3A A;  2AE3 A;  4YF9 A; 
#chains in the Genus database with same CATH homology
 4BTH A;  1AI6 A;  1PNK A;  1GHD A;  4YFA A;  3SRB A;  2WYB A;  1AJN A;  4PEL A;  1GM8 A;  2AE5 A;  3SRA A;  1JW0 A;  2WYE A;  1GKF A;  3L91 A;  1AJP A;  3JTQ A;  4K2F A;  4WKU A;  4M1J A;  2WYD A;  1GK9 A;  2AE4 A;  1FXV A;  1OR0 A;  2WYC A;  4YFB A;  1GK1 A;  1JVZ A;  1CP9 A;  4HST A;  1GM7 A;  1GM9 A;  4PEM A;  3S8R A;  1H2G A;  1KEH A;  3K3W A;  4WKV A;  4E56 A;  1JX9 A;  3JTR A;  4HSR A;  3SRC A;  1PNM A;  1K5S A;  1FXH A;  3ML0 A;  3L94 A;  4E57 A;  1KEC A;  4WKS A;  2ADV A;  1AI4 A;  1FM2 A;  1GK0 A;  1K5Q A;  1AJQ A;  4E55 A;  4K2G A;  1K7D A;  1AI7 A;  4WKT A;  1AI5 A;  1PNL A;  1E3A A;  2AE3 A;  4YF9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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