3SRAA

Structure of pseudomonas aerugionsa pvdq covalently acylated with myristic acid from pvdiq
Total Genus 51

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
sequence length
163
structure length
163
Chain Sequence
TGLAADIRWTAYGVPHIRAKDERGLGYGIGYAYARDNACLLAEEIVTARGERARYFGSEGKSSAELDNLPSDIFYAWLNQPEALQAFWQAQTPAVRQLLEGYAAGFNRFLREADGKTTSCLGQPWLRAIATDDLLRLTRRLLVEGGVGQFADALVAAAPPGAE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH3 (96-107)EMPTYO1 (67-148)S1 (34-38)AH4 (109-118)TII1 (38-41)S2 (42-46)AH5 (121-140)AH2 (79-84)AH1 (50-77)TI1 (85-88)TI2 (90-93)TI3 (143-146)TI5 (151-154)TII2 (148-151)AH6 (159-171)TI4 (146-149)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Pseudomonas aeruginosa
publication title Structural Characterization and High-Throughput Screening of Inhibitors of PvdQ, an NTN Hydrolase Involved in Pyoverdine Synthesis.
pubmed doi rcsb
molecule keywords Acyl-homoserine lactone acylase pvdQ
total genus 51
structure length 163
sequence length 163
ec nomenclature ec 3.5.1.97: Acyl-homoserine-lactone acylase.
pdb deposition date 2011-07-07
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.439.10 Mainly Alpha Orthogonal Bundle Penicillin Amidohydrolase; domain 1 Penicillin Amidohydrolase, domain 1 3sraA00
4M1JA 1K5SA 1OR0A 1AI5A 2WYCA 2WYBA 2WYDA 1AI4A 2WYEA 1KECA 4E55A 4E57A 4WKSA 1GK9A 1K7DA 1GM8A 3JTQA 1H2GA 3JTRA 1GM9A 4WKVA 3ML0A 1JX9A 1AI7A 2AE3A 1AJPA 1GM7A 4PELA 3SRBA 1GKFA 4E56A 4YFAA 1PNKA 3L94A 4BTHA 1GK0A 1AI6A 4PEMA 3SRAA 1FXHA 1K5QA 1KEHA 3K3WA 1PNLA 1PNMA 4HSRA 1AJNA 1GK1A 2AE5A 1JW0A 4HSTA 1GHDA 1AJQA 2ADVA 3L91A 4YF9A 4YFBA 1JVZA 3S8RA 4WKUA 1FM2A 3SRCA 1CP9A 1FXVA 4WKTA 2AE4A 4K2FA 4K2GA 1E3AA
chains in the Genus database with same CATH superfamily
4M1JA 1K5SA 1OR0A 1AI5A 2WYCA 2WYBA 2WYDA 1AI4A 2WYEA 1KECA 4E55A 4E57A 4WKSA 1GK9A 1K7DA 3FGTA 1GM8A 3JTQA 1H2GA 3JTRA 1GM9A 4WKVA 3ML0A 1JX9A 1AI7A 2AE3A 1AJPA 1GM7A 4PELA 3SRBA 1GKFA 4E56A 4YFAA 1PNKA 3L94A 4BTHA 3FGRA 4BWCA 1GK0A 1AI6A 4PEMA 3SRAA 1FXHA 1K5QA 1KEHA 3K3WA 1PNLA 1PNMA 4HSRA 1AJNA 1GK1A 2AE5A 1JW0A 4HSTA 1GHDA 1AJQA 2ADVA 3L91A 4YF9A 4YFBA 1JVZA 3S8RA 4WKUA 1FM2A 3SRCA 1CP9A 1FXVA 4WKTA 2AE4A 4K2FA 4K2GA 1E3AA
chains in the Genus database with same CATH topology
4M1JA 1K5SA 1OR0A 1AI5A 2WYCA 2WYBA 2WYDA 1AI4A 2WYEA 1KECA 4E55A 4E57A 4WKSA 1GK9A 1K7DA 1GM8A 3JTQA 1H2GA 3JTRA 1GM9A 4WKVA 3ML0A 1JX9A 1AI7A 2AE3A 1AJPA 1GM7A 4PELA 3SRBA 1GKFA 4E56A 4YFAA 1PNKA 3L94A 4BTHA 1GK0A 1AI6A 4PEMA 3SRAA 1FXHA 1K5QA 1KEHA 3K3WA 1PNLA 1PNMA 4HSRA 1AJNA 1GK1A 2AE5A 1JW0A 4HSTA 1GHDA 1AJQA 2ADVA 3L91A 4YF9A 4YFBA 1JVZA 3S8RA 4WKUA 1FM2A 3SRCA 1CP9A 1FXVA 4WKTA 2AE4A 4K2FA 4K2GA 1E3AA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4M1J A;  1K5S A;  1OR0 A;  1AI5 A;  2WYC A;  2WYB A;  2WYD A;  1AI4 A;  2WYE A;  1KEC A;  4E55 A;  4E57 A;  4WKS A;  1GK9 A;  1K7D A;  1GM8 A;  3JTQ A;  1H2G A;  3JTR A;  1GM9 A;  4WKV A;  3ML0 A;  1JX9 A;  1AI7 A;  2AE3 A;  1AJP A;  1GM7 A;  4PEL A;  3SRB A;  1GKF A;  4E56 A;  4YFA A;  1PNK A;  3L94 A;  4BTH A;  1GK0 A;  1AI6 A;  4PEM A;  3SRA A;  1FXH A;  1K5Q A;  1KEH A;  3K3W A;  1PNL A;  1PNM A;  4HSR A;  1AJN A;  1GK1 A;  2AE5 A;  1JW0 A;  4HST A;  1GHD A;  1AJQ A;  2ADV A;  3L91 A;  4YF9 A;  4YFB A;  1JVZ A;  3S8R A;  4WKU A;  1FM2 A;  3SRC A;  1CP9 A;  1FXV A;  4WKT A;  2AE4 A;  4K2F A;  4K2G A;  1E3A A; 
#chains in the Genus database with same CATH topology
 4M1J A;  1K5S A;  1OR0 A;  1AI5 A;  2WYC A;  2WYB A;  2WYD A;  1AI4 A;  2WYE A;  1KEC A;  4E55 A;  4E57 A;  4WKS A;  1GK9 A;  1K7D A;  3FGT A;  1GM8 A;  3JTQ A;  1H2G A;  3JTR A;  1GM9 A;  4WKV A;  3ML0 A;  1JX9 A;  1AI7 A;  2AE3 A;  1AJP A;  1GM7 A;  4PEL A;  3SRB A;  1GKF A;  4E56 A;  4YFA A;  1PNK A;  3L94 A;  4BTH A;  3FGR A;  4BWC A;  1GK0 A;  1AI6 A;  4PEM A;  3SRA A;  1FXH A;  1K5Q A;  1KEH A;  3K3W A;  1PNL A;  1PNM A;  4HSR A;  1AJN A;  1GK1 A;  2AE5 A;  1JW0 A;  4HST A;  1GHD A;  1AJQ A;  2ADV A;  3L91 A;  4YF9 A;  4YFB A;  1JVZ A;  3S8R A;  4WKU A;  1FM2 A;  3SRC A;  1CP9 A;  1FXV A;  4WKT A;  2AE4 A;  4K2F A;  4K2G A;  1E3A A; 
#chains in the Genus database with same CATH homology
 4M1J A;  1K5S A;  1OR0 A;  1AI5 A;  2WYC A;  2WYB A;  2WYD A;  1AI4 A;  2WYE A;  1KEC A;  4E55 A;  4E57 A;  4WKS A;  1GK9 A;  1K7D A;  1GM8 A;  3JTQ A;  1H2G A;  3JTR A;  1GM9 A;  4WKV A;  3ML0 A;  1JX9 A;  1AI7 A;  2AE3 A;  1AJP A;  1GM7 A;  4PEL A;  3SRB A;  1GKF A;  4E56 A;  4YFA A;  1PNK A;  3L94 A;  4BTH A;  1GK0 A;  1AI6 A;  4PEM A;  3SRA A;  1FXH A;  1K5Q A;  1KEH A;  3K3W A;  1PNL A;  1PNM A;  4HSR A;  1AJN A;  1GK1 A;  2AE5 A;  1JW0 A;  4HST A;  1GHD A;  1AJQ A;  2ADV A;  3L91 A;  4YF9 A;  4YFB A;  1JVZ A;  3S8R A;  4WKU A;  1FM2 A;  3SRC A;  1CP9 A;  1FXV A;  4WKT A;  2AE4 A;  4K2F A;  4K2G A;  1E3A A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.