3SWG | Genus

Total Genus 148

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	148
sequence length	417
structure length	416
Chain Sequence	YRDYFVIRGGKPLTGKVKISGAKNAALPIMFATILTEEPCTITNVPDLLDVRNTLLLLRELGAELEFLNNTVFINPSINSFITNQEIIRRMRASVLSLGPLLGRFGRAVVGLPGGSIGARPIDQHLKFFKEAGADVEVREGYVYVNLKEKRRVHFKFDLVTVTGTENALLYLASVPEESILENIALEPEVMDLIEVLKKMGAHVKVEGRSAYVKGSENLKGFTHSVIPDRIEAGTFMVGAVLTDGEILLENARINHLRAVVEKLKLIGGEVVEENGNLRVFRKESLRACDIETQVYPGFPTDMQAQFMALLSVAKGKSRIKENIFEHRFHHAQELNRLGANITVRGNTAYVEGVERLYGSEVYSTDLRASASLVLAGLVAQGETVVRDVYHLDRGYEKLEEKLKKLGADIERVSEL

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transferase
source organism	Aquifex aeolicus
publication title	Functional Consequence of Covalent Reaction of Phosphoenolpyruvate with UDP-N-acetylglucosamine 1-Carboxyvinyltransferase (MurA). pubmed doi rcsb
molecule keywords	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
total genus	148
structure length	416
sequence length	417
ec nomenclature	ec 2.5.1.7: UDP-N-acetylglucosamine 1-carboxyvinyltransferase.
pdb deposition date	2011-07-13

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00275	EPSP_synthase	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.65.10.10	Alpha Beta	Alpha-beta prism	UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain	Enolpyruvate transferase domain	3swgA01
3.65.10.10	Alpha Beta	Alpha-beta prism	UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain	Enolpyruvate transferase domain	3swgA02

3TI2A 3ZH3A 2AA9A 2PQ9A 2PQBA 4E7EA 2GGDA 2O0EA 1MI4A 2GG4A 3SWQA 3SWIA 3FK1A 4EGRA 2RL1A 3TR1A 1X8RA 2GG6A 1RF6A 3FK0A 1EJCA 3RMTA 3FJXA 3KQAA 4R7UA 4E7DA 2O0XA 1G6TA 1EJDA 1P88A 4EIIA 5BS5A 4ZNDA 1NAWA 3ROIA 3VCYA 3SPBA 3ZH4A 4E7CA 3SWGA 5BUFA 2QFQA 2O15A 3R38A 3SG1A 3SU9A 2PQDA 3UPKA 3V4TA 3SLHA 2BJBA 2AAYA 1RYWA 2O0BA 1G6SA 1RF5A 2Z2CA 3KQJA 2QFUA 4N3PA 2QFSA 2QFTA 3FJZA 3NVSA 5U4HA 4FQDA 1RF4A 2GGAA 3SWAA 5BQ2A 1Q36A 4E7BA 3LTHA 1YBGA 3SWEA 3SWDA 1Q3GA 2YVWA 1EYNA 2PQCA 2RL2A 1P89A 1X8TA 3V5VA 4E7GA 2O0ZA 4GFPA 2O0DA 3ISSA 3KR6A 1UAEA 1A2NA 4E7FA 1DLGA
chains in the Genus database with same CATH superfamily

3TI2A 1QMIA 3ZH3A 2AA9A 2PQ9A 4O8JA 2PQBA 4E7EA 2GGDA 2O0EA 1MI4A 2GG4A 3SWQA 3SWIA 3FK1A 4EGRA 2RL1A 3KGDA 3TR1A 1X8RA 2GG6A 1QMHA 1RF6A 3FK0A 1EJCA 3RMTA 3FJXA 3KQAA 4R7UA 4E7DA 2O0XA 3PQVA 1G6TA 3TUTA 1EJDA 1P88A 4EIIA 5BS5A 4ZNDA 1NAWA 3TUXA 3ROIA 3VCYA 3SPBA 3ZH4A 4E7CA 3SWGA 5BUFA 2QFQA 4O89A 2O15A 3R38A 3SG1A 3SU9A 4CLQA 2PQDA 3UPKA 3TV1A 3V4TA 3SLHA 2BJBA 3TW3A 2AAYA 1RYWA 2O0BA 1G6SA 1RF5A 2Z2CA 3KQJA 2QFUA 4N3PA 2QFSA 2QFTA 3FJZA 3NVSA 5U4HA 4FQDA 1RF4A 2GGAA 3SWAA 5BQ2A 1Q36A 4E7BA 3LTHA 1YBGA 3SWEA 3SWDA 1Q3GA 2YVWA 1EYNA 2PQCA 2RL2A 1P89A 1X8TA 3V5VA 4E7GA 2O0ZA 4GFPA 2O0DA 3ISSA 3KR6A 1UAEA 1A2NA 4E7FA 1DLGA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3TI2 A;  3ZH3 A;  2AA9 A;  2PQ9 A;  2PQB A;  4E7E A;  2GGD A;  2O0E A;  1MI4 A;  2GG4 A;  3SWQ A;  3SWI A;  3FK1 A;  4EGR A;  2RL1 A;  3TR1 A;  1X8R A;  2GG6 A;  1RF6 A;  3FK0 A;  1EJC A;  3RMT A;  3FJX A;  3KQA A;  4R7U A;  4E7D A;  2O0X A;  1G6T A;  1EJD A;  1P88 A;  4EII A;  5BS5 A;  4ZND A;  1NAW A;  3ROI A;  3VCY A;  3SPB A;  3ZH4 A;  4E7C A;  3SWG A;  5BUF A;  2QFQ A;  2O15 A;  3R38 A;  3SG1 A;  3SU9 A;  2PQD A;  3UPK A;  3V4T A;  3SLH A;  2BJB A;  2AAY A;  1RYW A;  2O0B A;  1G6S A;  1RF5 A;  2Z2C A;  3KQJ A;  2QFU A;  4N3P A;  2QFS A;  2QFT A;  3FJZ A;  3NVS A;  5U4H A;  4FQD A;  1RF4 A;  2GGA A;  3SWA A;  5BQ2 A;  1Q36 A;  4E7B A;  3LTH A;  1YBG A;  3SWE A;  3SWD A;  1Q3G A;  2YVW A;  1EYN A;  2PQC A;  2RL2 A;  1P89 A;  1X8T A;  3V5V A;  4E7G A;  2O0Z A;  4GFP A;  2O0D A;  3ISS A;  3KR6 A;  1UAE A;  1A2N A;  4E7F A;  1DLG A; 
#chains in the Genus database with same CATH topology
 3TI2 A;  1QMI A;  3ZH3 A;  2AA9 A;  2PQ9 A;  4O8J A;  2PQB A;  4E7E A;  2GGD A;  2O0E A;  1MI4 A;  2GG4 A;  3SWQ A;  3SWI A;  3FK1 A;  4EGR A;  2RL1 A;  3KGD A;  3TR1 A;  1X8R A;  2GG6 A;  1QMH A;  1RF6 A;  3FK0 A;  1EJC A;  3RMT A;  3FJX A;  3KQA A;  4R7U A;  4E7D A;  2O0X A;  3PQV A;  1G6T A;  3TUT A;  1EJD A;  1P88 A;  4EII A;  5BS5 A;  4ZND A;  1NAW A;  3TUX A;  3ROI A;  3VCY A;  3SPB A;  3ZH4 A;  4E7C A;  3SWG A;  5BUF A;  2QFQ A;  4O89 A;  2O15 A;  3R38 A;  3SG1 A;  3SU9 A;  4CLQ A;  2PQD A;  3UPK A;  3TV1 A;  3V4T A;  3SLH A;  2BJB A;  3TW3 A;  2AAY A;  1RYW A;  2O0B A;  1G6S A;  1RF5 A;  2Z2C A;  3KQJ A;  2QFU A;  4N3P A;  2QFS A;  2QFT A;  3FJZ A;  3NVS A;  5U4H A;  4FQD A;  1RF4 A;  2GGA A;  3SWA A;  5BQ2 A;  1Q36 A;  4E7B A;  3LTH A;  1YBG A;  3SWE A;  3SWD A;  1Q3G A;  2YVW A;  1EYN A;  2PQC A;  2RL2 A;  1P89 A;  1X8T A;  3V5V A;  4E7G A;  2O0Z A;  4GFP A;  2O0D A;  3ISS A;  3KR6 A;  1UAE A;  1A2N A;  4E7F A;  1DLG A; 
#chains in the Genus database with same CATH homology
 3TI2 A;  3ZH3 A;  2AA9 A;  2PQ9 A;  2PQB A;  4E7E A;  2GGD A;  2O0E A;  1MI4 A;  2GG4 A;  3SWQ A;  3SWI A;  3FK1 A;  4EGR A;  2RL1 A;  3TR1 A;  1X8R A;  2GG6 A;  1RF6 A;  3FK0 A;  1EJC A;  3RMT A;  3FJX A;  3KQA A;  4R7U A;  4E7D A;  2O0X A;  1G6T A;  1EJD A;  1P88 A;  4EII A;  5BS5 A;  4ZND A;  1NAW A;  3ROI A;  3VCY A;  3SPB A;  3ZH4 A;  4E7C A;  3SWG A;  5BUF A;  2QFQ A;  2O15 A;  3R38 A;  3SG1 A;  3SU9 A;  2PQD A;  3UPK A;  3V4T A;  3SLH A;  2BJB A;  2AAY A;  1RYW A;  2O0B A;  1G6S A;  1RF5 A;  2Z2C A;  3KQJ A;  2QFU A;  4N3P A;  2QFS A;  2QFT A;  3FJZ A;  3NVS A;  5U4H A;  4FQD A;  1RF4 A;  2GGA A;  3SWA A;  5BQ2 A;  1Q36 A;  4E7B A;  3LTH A;  1YBG A;  3SWE A;  3SWD A;  1Q3G A;  2YVW A;  1EYN A;  2PQC A;  2RL2 A;  1P89 A;  1X8T A;  3V5V A;  4E7G A;  2O0Z A;  4GFP A;  2O0D A;  3ISS A;  3KR6 A;  1UAE A;  1A2N A;  4E7F A;  1DLG A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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3SWGA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations