3SWIA

E. cloacae mura in complex with enolpyruvyl-udp-n-acetylgalactosamine and covalent adduct of pep with cys115
Total Genus 132
50100150200250300350400020406080100120
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
132
sequence length
419
structure length
417
Chain Sequence
MDKFRVQGPTRLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDIDTTMKLLTQLGTKVERGSVWIDASNVNNFSAPYDLVKTMRASIWALGPLVARFGQGQVSLPGGAIGARPVDLHIFGLEKLGAEIKLEEGYVKASVNGRLKGAHIVMDKVSVGATVTIMSAATLAEGTTIIENAAREPEIVDTANFLVALGAKISGQGTDRITIEGVERLGGGVYRVLPDRIETGTFLVAAAISGGKIVCRNAQPDTLDAVLAKLREAGADIETGEDWISLDMHGKRPKAVTVRTAPHPAFPTDMQAQFTLLNLVAEGTGVITETIFENRFMHVPELIRMGAHAEIESNTVICHGVEKLSGAQVMATDLRASASLVLAGCIAEGTTVVDRIYHIDRGYERIEDKLRALGANIERVKGE
50100150200250300350400400300200100
020406080100120Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS24 (412-416)S15 (248-252)S14 (224-227)AH1 (22-33)AH2 (48-60)AH4 (97-104)S3 (38-42)S5 (70-73)TIV2 (74-77)S7 (106-110)AH3 (84-88)TIV4 (138-141)TIV3 (88-91)3H1 (91-96)S9 (142-146)S8 (135-139)AH5 (122-132)AH6 (163-174)TIV5 (147-150)TII1 (182-185)S13 (212-216)S11 (179-183)TVIII2 (210-213)AH7 (189-201)S12 (204-206)TII2 (207-210)AH13 (402-408)AH8 (232-244)AH9 (259-269)TIV8 (284-287)S17 (280-283)AH10 (307-316)S18 (293-295)TVIa1 (298-301)3H3 (304-306)TIV9 (299-302)S19 (320-324)TIV11 (326-329)S21 (351-355)TIV10 (325-328)S20 (344-348)TI1 (328-331)AH11 (333-341)S22 (364-366)TII'1 (348-351)S23 (385-390)TIV12 (369-372)3H4 (392-397)TIV13 (399-402)S1 (3-8)S2 (13-17)TIV1 (66-70)S4 (63-65)S6 (81-82)S10 (155-157)TIV7 (276-279)3H2 (256-258)TIV6 (251-254)S16 (272-275)TVIII1 (158-161)AH12 (372-382)Updating...
connected with : NaN
molecule tags Transferase
source organism Enterobacter cloacae
publication title Functional Consequence of Covalent Reaction of Phosphoenolpyruvate with UDP-N-acetylglucosamine 1-Carboxyvinyltransferase (MurA).
pubmed doi rcsb
molecule keywords UDP-N-acetylglucosamine 1-carboxyvinyltransferase
total genus 132
structure length 417
sequence length 419
ec nomenclature ec 2.5.1.7: UDP-N-acetylglucosamine 1-carboxyvinyltransferase.
pdb deposition date 2011-07-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00275 EPSP_synthase EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.65.10.10 Alpha Beta Alpha-beta prism UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain Enolpyruvate transferase domain 3swiA02
3.65.10.10 Alpha Beta Alpha-beta prism UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain Enolpyruvate transferase domain 3swiA01
3V5VA 3TR1A 2AA9A 3ROIA 5BUFA 4N3PA 1P88A 1A2NA 4R7UA 1DLGA 1Q36A 2RL2A 2YVWA 1UAEA 3KR6A 4E7BA 3TI2A 5BQ2A 2RL1A 2BJBA 5U4HA 3FK0A 2GG6A 2O15A 1YBGA 3RMTA 4E7CA 2O0EA 1RF4A 2Z2CA 2O0ZA 3ISSA 5BS5A 1RF6A 1EJCA 4E7DA 1X8TA 4E7EA 1X8RA 2QFUA 2O0BA 3KQJA 2GGAA 2QFQA 1G6SA 1P89A 1Q3GA 4E7GA 1G6TA 4GFPA 3SU9A 3VCYA 4E7FA 3SWDA 3UPKA 2PQBA 3LTHA 1EJDA 3SWGA 3KQAA 3ZH4A 4EIIA 2PQDA 3FJXA 1EYNA 3FK1A 2O0XA 3SWQA 2QFTA 1RF5A 2AAYA 4ZNDA 2GGDA 4EGRA 1RYWA 4FQDA 3V4TA 1MI4A 2QFSA 2PQ9A 3SWEA 3SWAA 3FJZA 3R38A 3SLHA 3NVSA 3SWIA 2GG4A 1NAWA 3ZH3A 2PQCA 3SG1A 2O0DA 3SPBA
chains in the Genus database with same CATH superfamily
3V5VA 3TR1A 2AA9A 3ROIA 5BUFA 4N3PA 1P88A 1A2NA 4R7UA 1DLGA 1Q36A 2RL2A 1QMIA 2YVWA 1UAEA 3KR6A 4E7BA 3TI2A 1QMHA 5BQ2A 4CLQA 2RL1A 2BJBA 5U4HA 3FK0A 2GG6A 2O15A 1YBGA 3RMTA 4E7CA 2O0EA 1RF4A 2Z2CA 2O0ZA 3ISSA 5BS5A 1RF6A 1EJCA 4E7DA 3TUTA 4O89A 1X8TA 4E7EA 1X8RA 2QFUA 2O0BA 3KQJA 2GGAA 2QFQA 1G6SA 1P89A 1Q3GA 4E7GA 1G6TA 4GFPA 3SU9A 3TUXA 3VCYA 4E7FA 3SWDA 4O8JA 3UPKA 2PQBA 3LTHA 1EJDA 3SWGA 3KQAA 3ZH4A 4EIIA 2PQDA 3FJXA 1EYNA 3FK1A 2O0XA 3SWQA 2QFTA 1RF5A 3KGDA 2AAYA 4ZNDA 2GGDA 4EGRA 3TV1A 1RYWA 4FQDA 3V4TA 3TW3A 1MI4A 2QFSA 2PQ9A 3SWEA 3SWAA 3PQVA 3FJZA 3R38A 3SLHA 3NVSA 3SWIA 2GG4A 1NAWA 3ZH3A 2PQCA 3SG1A 2O0DA 3SPBA
chains in the Genus database with same CATH topology
3V5VA 3TR1A 2AA9A 3ROIA 5BUFA 4N3PA 1P88A 1A2NA 4R7UA 1DLGA 1Q36A 2RL2A 2YVWA 1UAEA 3KR6A 4E7BA 3TI2A 5BQ2A 2RL1A 2BJBA 5U4HA 3FK0A 2GG6A 2O15A 1YBGA 3RMTA 4E7CA 2O0EA 1RF4A 2Z2CA 2O0ZA 3ISSA 5BS5A 1RF6A 1EJCA 4E7DA 1X8TA 4E7EA 1X8RA 2QFUA 2O0BA 3KQJA 2GGAA 2QFQA 1G6SA 1P89A 1Q3GA 4E7GA 1G6TA 4GFPA 3SU9A 3VCYA 4E7FA 3SWDA 3UPKA 2PQBA 3LTHA 1EJDA 3SWGA 3KQAA 3ZH4A 4EIIA 2PQDA 3FJXA 1EYNA 3FK1A 2O0XA 3SWQA 2QFTA 1RF5A 2AAYA 4ZNDA 2GGDA 4EGRA 1RYWA 4FQDA 3V4TA 1MI4A 2QFSA 2PQ9A 3SWEA 3SWAA 3FJZA 3R38A 3SLHA 3NVSA 3SWIA 2GG4A 1NAWA 3ZH3A 2PQCA 3SG1A 2O0DA 3SPBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3V5V A;  3TR1 A;  2AA9 A;  3ROI A;  5BUF A;  4N3P A;  1P88 A;  1A2N A;  4R7U A;  1DLG A;  1Q36 A;  2RL2 A;  2YVW A;  1UAE A;  3KR6 A;  4E7B A;  3TI2 A;  5BQ2 A;  2RL1 A;  2BJB A;  5U4H A;  3FK0 A;  2GG6 A;  2O15 A;  1YBG A;  3RMT A;  4E7C A;  2O0E A;  1RF4 A;  2Z2C A;  2O0Z A;  3ISS A;  5BS5 A;  1RF6 A;  1EJC A;  4E7D A;  1X8T A;  4E7E A;  1X8R A;  2QFU A;  2O0B A;  3KQJ A;  2GGA A;  2QFQ A;  1G6S A;  1P89 A;  1Q3G A;  4E7G A;  1G6T A;  4GFP A;  3SU9 A;  3VCY A;  4E7F A;  3SWD A;  3UPK A;  2PQB A;  3LTH A;  1EJD A;  3SWG A;  3KQA A;  3ZH4 A;  4EII A;  2PQD A;  3FJX A;  1EYN A;  3FK1 A;  2O0X A;  3SWQ A;  2QFT A;  1RF5 A;  2AAY A;  4ZND A;  2GGD A;  4EGR A;  1RYW A;  4FQD A;  3V4T A;  1MI4 A;  2QFS A;  2PQ9 A;  3SWE A;  3SWA A;  3FJZ A;  3R38 A;  3SLH A;  3NVS A;  3SWI A;  2GG4 A;  1NAW A;  3ZH3 A;  2PQC A;  3SG1 A;  2O0D A;  3SPB A; 
#chains in the Genus database with same CATH topology
 3V5V A;  3TR1 A;  2AA9 A;  3ROI A;  5BUF A;  4N3P A;  1P88 A;  1A2N A;  4R7U A;  1DLG A;  1Q36 A;  2RL2 A;  1QMI A;  2YVW A;  1UAE A;  3KR6 A;  4E7B A;  3TI2 A;  1QMH A;  5BQ2 A;  4CLQ A;  2RL1 A;  2BJB A;  5U4H A;  3FK0 A;  2GG6 A;  2O15 A;  1YBG A;  3RMT A;  4E7C A;  2O0E A;  1RF4 A;  2Z2C A;  2O0Z A;  3ISS A;  5BS5 A;  1RF6 A;  1EJC A;  4E7D A;  3TUT A;  4O89 A;  1X8T A;  4E7E A;  1X8R A;  2QFU A;  2O0B A;  3KQJ A;  2GGA A;  2QFQ A;  1G6S A;  1P89 A;  1Q3G A;  4E7G A;  1G6T A;  4GFP A;  3SU9 A;  3TUX A;  3VCY A;  4E7F A;  3SWD A;  4O8J A;  3UPK A;  2PQB A;  3LTH A;  1EJD A;  3SWG A;  3KQA A;  3ZH4 A;  4EII A;  2PQD A;  3FJX A;  1EYN A;  3FK1 A;  2O0X A;  3SWQ A;  2QFT A;  1RF5 A;  3KGD A;  2AAY A;  4ZND A;  2GGD A;  4EGR A;  3TV1 A;  1RYW A;  4FQD A;  3V4T A;  3TW3 A;  1MI4 A;  2QFS A;  2PQ9 A;  3SWE A;  3SWA A;  3PQV A;  3FJZ A;  3R38 A;  3SLH A;  3NVS A;  3SWI A;  2GG4 A;  1NAW A;  3ZH3 A;  2PQC A;  3SG1 A;  2O0D A;  3SPB A; 
#chains in the Genus database with same CATH homology
 3V5V A;  3TR1 A;  2AA9 A;  3ROI A;  5BUF A;  4N3P A;  1P88 A;  1A2N A;  4R7U A;  1DLG A;  1Q36 A;  2RL2 A;  2YVW A;  1UAE A;  3KR6 A;  4E7B A;  3TI2 A;  5BQ2 A;  2RL1 A;  2BJB A;  5U4H A;  3FK0 A;  2GG6 A;  2O15 A;  1YBG A;  3RMT A;  4E7C A;  2O0E A;  1RF4 A;  2Z2C A;  2O0Z A;  3ISS A;  5BS5 A;  1RF6 A;  1EJC A;  4E7D A;  1X8T A;  4E7E A;  1X8R A;  2QFU A;  2O0B A;  3KQJ A;  2GGA A;  2QFQ A;  1G6S A;  1P89 A;  1Q3G A;  4E7G A;  1G6T A;  4GFP A;  3SU9 A;  3VCY A;  4E7F A;  3SWD A;  3UPK A;  2PQB A;  3LTH A;  1EJD A;  3SWG A;  3KQA A;  3ZH4 A;  4EII A;  2PQD A;  3FJX A;  1EYN A;  3FK1 A;  2O0X A;  3SWQ A;  2QFT A;  1RF5 A;  2AAY A;  4ZND A;  2GGD A;  4EGR A;  1RYW A;  4FQD A;  3V4T A;  1MI4 A;  2QFS A;  2PQ9 A;  3SWE A;  3SWA A;  3FJZ A;  3R38 A;  3SLH A;  3NVS A;  3SWI A;  2GG4 A;  1NAW A;  3ZH3 A;  2PQC A;  3SG1 A;  2O0D A;  3SPB A; 
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