3V4TA

E. cloacae c115d mura liganded with unag
Total Genus 138
50100150200250300350400020406080100120140
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
138
sequence length
419
structure length
418
Chain Sequence
MDKFRVQGPTRLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDIDTTMKLLTQLGTKVERGSVWIDASNVNNFSAPYDLVKTMRASIWALGPLVARFGQGQVSLPGGDAIGARPVDLHIFGLEKLGAEIKLEEGYVKASVNGRLKGAHIVMDKVSVGATVTIMSAATLAEGTTIIENAAREPEIVDTANFLVALGAKISGQGTDRITIEGVERLGGGVYRVLPDRIETGTFLVAAAISGGKIVCRNAQPDTLDAVLAKLREAGADIETGEDWISLDMHGKRPKAVTVRTAPHPAFPTDMQAQFTLLNLVAEGTGVITETIFENRFMHVPELIRMGAHAEIESNTVICHGVEKLSGAQVMATDLRASASLVLAGCIAEGTTVVDRIYHIDRGYERIEDKLRALGANIERVKGE
50100150200250300350400400300200100
020406080100120Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS1 (3-8)S2 (13-17)S15 (248-252)3H1 (32-34)AH4 (97-104)S3 (39-42)TIV2 (66-70)S14 (224-227)TIV1 (41-44)AH2 (48-60)TI1 (74-77)S5 (69-73)S7 (106-110)AH3 (84-88)S6 (81-82)TIV4 (138-141)TIV3 (88-91)3H2 (91-96)AH6 (163-174)S9 (142-146)TI2 (115-118)TVIII3 (326-329)AH5 (123-132)S8 (135-139)TIV5 (147-150)TIV6 (182-185)TII1 (207-210)AH7 (189-201)S12 (204-206)S13 (212-216)TVIII2 (210-213)AH14 (402-408)AH8 (232-244)AH10 (307-316)AH13 (392-398)S17 (280-283)TI3 (276-279)TIV7 (251-254)3H3 (256-258)AH9 (260-269)TI'2 (284-287)S16 (272-275)S18 (293-296)TVIa1 (298-301)3H4 (304-306)TIV8 (299-302)S19 (320-325)AH11 (333-340)TI4 (328-331)TIV9 (325-328)S23 (364-366)S22 (360-361)S20 (344-348)TII'1 (348-351)S24 (383-390)TIV10 (369-372)TIV11 (389-392)S25 (412-416)AH12 (372-382)TIV12 (399-402)S4 (63-65)S11 (179-183)TVIII1 (158-161)S21 (351-355)AH1 (22-31)S10 (155-157)Updating...
connected with : NaN
molecule tags Transferase
source organism Enterobacter cloacae
publication title Functional Consequence of Covalent Reaction of Phosphoenolpyruvate with UDP-N-acetylglucosamine 1-Carboxyvinyltransferase (MurA).
pubmed doi rcsb
molecule keywords UDP-N-acetylglucosamine 1-carboxyvinyltransferase
total genus 138
structure length 418
sequence length 419
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature ec 2.5.1.7: UDP-N-acetylglucosamine 1-carboxyvinyltransferase.
pdb deposition date 2011-12-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00275 EPSP_synthase EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.65.10.10 Alpha Beta Alpha-beta prism UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain Enolpyruvate transferase domain 3v4tA02
3.65.10.10 Alpha Beta Alpha-beta prism UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain Enolpyruvate transferase domain 3v4tA01
2PQCA 1YBGA 2AAYA 3UPKA 5BUFA 3SWDA 2PQBA 4E7FA 2QFUA 3FK1A 3SWIA 1G6TA 5BS5A 1RF6A 4FQDA 4E7CA 2O0ZA 2PQ9A 1EJDA 2QFQA 2O15A 1X8RA 3SG1A 3VCYA 3FK0A 2GG6A 3FJZA 3SLHA 1EJCA 3SWGA 3V5VA 3RMTA 3V4TA 4R7UA 5BQ2A 1NAWA 4ZNDA 2GGDA 1RF4A 2YVWA 1MI4A 5U4HA 3ZH4A 3TI2A 1G6SA 1X8TA 3KQJA 1P89A 3SWQA 3FJXA 3SWEA 1Q36A 1RYWA 3NVSA 3R38A 2RL2A 4N3PA 2Z2CA 2QFSA 2GGAA 1EYNA 1A2NA 2O0XA 2O0DA 2RL1A 3ROIA 1DLGA 3SPBA 3TR1A 2PQDA 4EGRA 2QFTA 2GG4A 2O0BA 3KQAA 4E7BA 2BJBA 3ISSA 4E7GA 3LTHA 4E7EA 1P88A 2O0EA 3ZH3A 4EIIA 3KR6A 1RF5A 4E7DA 3SU9A 1UAEA 3SWAA 1Q3GA 2AA9A 4GFPA
chains in the Genus database with same CATH superfamily
2PQCA 3PQVA 1YBGA 3TV1A 2AAYA 3UPKA 5BUFA 3SWDA 2PQBA 4E7FA 3TW3A 2QFUA 3FK1A 3SWIA 1G6TA 5BS5A 1RF6A 4FQDA 4E7CA 2O0ZA 2PQ9A 1EJDA 2QFQA 2O15A 1X8RA 4O89A 3SG1A 3VCYA 3FK0A 2GG6A 3FJZA 3SLHA 3TUTA 1EJCA 3TUXA 3SWGA 3V5VA 3RMTA 3V4TA 4R7UA 5BQ2A 1NAWA 4ZNDA 2GGDA 1RF4A 2YVWA 1MI4A 5U4HA 1QMIA 3ZH4A 3TI2A 4O8JA 1G6SA 4CLQA 1X8TA 3KQJA 1P89A 3SWQA 3FJXA 3SWEA 1Q36A 1RYWA 3NVSA 3R38A 2RL2A 4N3PA 2Z2CA 2QFSA 2GGAA 1EYNA 1A2NA 2O0XA 2O0DA 2RL1A 3ROIA 1DLGA 3SPBA 3TR1A 2PQDA 4EGRA 2QFTA 2GG4A 2O0BA 3KQAA 4E7BA 2BJBA 3ISSA 4E7GA 1QMHA 3LTHA 4E7EA 1P88A 2O0EA 3KGDA 3ZH3A 4EIIA 3KR6A 1RF5A 4E7DA 3SU9A 1UAEA 3SWAA 1Q3GA 2AA9A 4GFPA
chains in the Genus database with same CATH topology
2PQCA 1YBGA 2AAYA 3UPKA 5BUFA 3SWDA 2PQBA 4E7FA 2QFUA 3FK1A 3SWIA 1G6TA 5BS5A 1RF6A 4FQDA 4E7CA 2O0ZA 2PQ9A 1EJDA 2QFQA 2O15A 1X8RA 3SG1A 3VCYA 3FK0A 2GG6A 3FJZA 3SLHA 1EJCA 3SWGA 3V5VA 3RMTA 3V4TA 4R7UA 5BQ2A 1NAWA 4ZNDA 2GGDA 1RF4A 2YVWA 1MI4A 5U4HA 3ZH4A 3TI2A 1G6SA 1X8TA 3KQJA 1P89A 3SWQA 3FJXA 3SWEA 1Q36A 1RYWA 3NVSA 3R38A 2RL2A 4N3PA 2Z2CA 2QFSA 2GGAA 1EYNA 1A2NA 2O0XA 2O0DA 2RL1A 3ROIA 1DLGA 3SPBA 3TR1A 2PQDA 4EGRA 2QFTA 2GG4A 2O0BA 3KQAA 4E7BA 2BJBA 3ISSA 4E7GA 3LTHA 4E7EA 1P88A 2O0EA 3ZH3A 4EIIA 3KR6A 1RF5A 4E7DA 3SU9A 1UAEA 3SWAA 1Q3GA 2AA9A 4GFPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PQC A;  1YBG A;  2AAY A;  3UPK A;  5BUF A;  3SWD A;  2PQB A;  4E7F A;  2QFU A;  3FK1 A;  3SWI A;  1G6T A;  5BS5 A;  1RF6 A;  4FQD A;  4E7C A;  2O0Z A;  2PQ9 A;  1EJD A;  2QFQ A;  2O15 A;  1X8R A;  3SG1 A;  3VCY A;  3FK0 A;  2GG6 A;  3FJZ A;  3SLH A;  1EJC A;  3SWG A;  3V5V A;  3RMT A;  3V4T A;  4R7U A;  5BQ2 A;  1NAW A;  4ZND A;  2GGD A;  1RF4 A;  2YVW A;  1MI4 A;  5U4H A;  3ZH4 A;  3TI2 A;  1G6S A;  1X8T A;  3KQJ A;  1P89 A;  3SWQ A;  3FJX A;  3SWE A;  1Q36 A;  1RYW A;  3NVS A;  3R38 A;  2RL2 A;  4N3P A;  2Z2C A;  2QFS A;  2GGA A;  1EYN A;  1A2N A;  2O0X A;  2O0D A;  2RL1 A;  3ROI A;  1DLG A;  3SPB A;  3TR1 A;  2PQD A;  4EGR A;  2QFT A;  2GG4 A;  2O0B A;  3KQA A;  4E7B A;  2BJB A;  3ISS A;  4E7G A;  3LTH A;  4E7E A;  1P88 A;  2O0E A;  3ZH3 A;  4EII A;  3KR6 A;  1RF5 A;  4E7D A;  3SU9 A;  1UAE A;  3SWA A;  1Q3G A;  2AA9 A;  4GFP A; 
#chains in the Genus database with same CATH topology
 2PQC A;  3PQV A;  1YBG A;  3TV1 A;  2AAY A;  3UPK A;  5BUF A;  3SWD A;  2PQB A;  4E7F A;  3TW3 A;  2QFU A;  3FK1 A;  3SWI A;  1G6T A;  5BS5 A;  1RF6 A;  4FQD A;  4E7C A;  2O0Z A;  2PQ9 A;  1EJD A;  2QFQ A;  2O15 A;  1X8R A;  4O89 A;  3SG1 A;  3VCY A;  3FK0 A;  2GG6 A;  3FJZ A;  3SLH A;  3TUT A;  1EJC A;  3TUX A;  3SWG A;  3V5V A;  3RMT A;  3V4T A;  4R7U A;  5BQ2 A;  1NAW A;  4ZND A;  2GGD A;  1RF4 A;  2YVW A;  1MI4 A;  5U4H A;  1QMI A;  3ZH4 A;  3TI2 A;  4O8J A;  1G6S A;  4CLQ A;  1X8T A;  3KQJ A;  1P89 A;  3SWQ A;  3FJX A;  3SWE A;  1Q36 A;  1RYW A;  3NVS A;  3R38 A;  2RL2 A;  4N3P A;  2Z2C A;  2QFS A;  2GGA A;  1EYN A;  1A2N A;  2O0X A;  2O0D A;  2RL1 A;  3ROI A;  1DLG A;  3SPB A;  3TR1 A;  2PQD A;  4EGR A;  2QFT A;  2GG4 A;  2O0B A;  3KQA A;  4E7B A;  2BJB A;  3ISS A;  4E7G A;  1QMH A;  3LTH A;  4E7E A;  1P88 A;  2O0E A;  3KGD A;  3ZH3 A;  4EII A;  3KR6 A;  1RF5 A;  4E7D A;  3SU9 A;  1UAE A;  3SWA A;  1Q3G A;  2AA9 A;  4GFP A; 
#chains in the Genus database with same CATH homology
 2PQC A;  1YBG A;  2AAY A;  3UPK A;  5BUF A;  3SWD A;  2PQB A;  4E7F A;  2QFU A;  3FK1 A;  3SWI A;  1G6T A;  5BS5 A;  1RF6 A;  4FQD A;  4E7C A;  2O0Z A;  2PQ9 A;  1EJD A;  2QFQ A;  2O15 A;  1X8R A;  3SG1 A;  3VCY A;  3FK0 A;  2GG6 A;  3FJZ A;  3SLH A;  1EJC A;  3SWG A;  3V5V A;  3RMT A;  3V4T A;  4R7U A;  5BQ2 A;  1NAW A;  4ZND A;  2GGD A;  1RF4 A;  2YVW A;  1MI4 A;  5U4H A;  3ZH4 A;  3TI2 A;  1G6S A;  1X8T A;  3KQJ A;  1P89 A;  3SWQ A;  3FJX A;  3SWE A;  1Q36 A;  1RYW A;  3NVS A;  3R38 A;  2RL2 A;  4N3P A;  2Z2C A;  2QFS A;  2GGA A;  1EYN A;  1A2N A;  2O0X A;  2O0D A;  2RL1 A;  3ROI A;  1DLG A;  3SPB A;  3TR1 A;  2PQD A;  4EGR A;  2QFT A;  2GG4 A;  2O0B A;  3KQA A;  4E7B A;  2BJB A;  3ISS A;  4E7G A;  3LTH A;  4E7E A;  1P88 A;  2O0E A;  3ZH3 A;  4EII A;  3KR6 A;  1RF5 A;  4E7D A;  3SU9 A;  1UAE A;  3SWA A;  1Q3G A;  2AA9 A;  4GFP A; 
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similar chains in the pdb database (?% sequence similarity)

 
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