3VCYA

Structure of mura (udp-n-acetylglucosamine enolpyruvyl transferase), from vibrio fischeri in complex with substrate udp-n-acetylglucosamine and the drug fosfomycin.
Total Genus 140
50100150200250300350400020406080100120140
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
140
sequence length
419
structure length
419
Chain Sequence
MDKFRIQGSDKPLSGEVTISGAKNAALPILFASLLAEEPVEVANVPKLRDVDTTMELLKRLGAEVSRNGSVHIDASGVNDFCAPYDLVKTMRASIWALGPLVARFGKGQVSLPGGCAIGARPVDLHIHGLEQLGATIKLEEGYVKAEVDGRLKGAHIVMDKVSVGATITVMCAATLAEGTTVLENAAREPEIVDTANFLNAIGAKVSGMGTDTITIEGVERLGGGYHEVVADRIETGTFLVAAAVSGGKIVCKNTKAHLLEAVLAKLEEAGADVQTGDDWISLDMTGRELKAVNIRTAPHPAFPTDMQAQFTLLNMMAKGSGIITETIFENRFMHIPELQRMGAHAEIEGNTAICGDTDGLSGAQVMATDLRASASLVIAGCIAKGETIVDRIYHIDRGYDKIEDKLTALGANIERVHS
50100150200250300350400400300200100
020406080100120140Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS24 (413-417)S15 (249-253)3H1 (33-35)AH4 (98-105)S3 (39-43)TIV2 (67-70)TIV1 (42-45)TIV12 (400-403)S5 (71-74)TI1 (75-78)S7 (107-111)AH3 (85-90)S9 (143-147)3H2 (92-97)AH6 (164-175)TIV4 (139-142)TI2 (116-119)AH5 (123-133)S8 (136-140)S11 (180-184)TVIII1 (159-162)TIV6 (183-186)TVIII2 (211-214)AH7 (190-202)AH8 (233-246)S14 (225-228)TII1 (208-211)S13 (213-217)AH14 (403-410)TIV7 (252-255)AH10 (308-317)TIV8 (277-280)S16 (273-276)S17 (280-284)TII2 (285-288)S19 (322-326)S18 (295-297)TIV10 (326-329)TIV9 (300-303)TVIa1 (299-302)3H4 (305-307)AH11 (334-342)S21 (352-355)TII'1 (349-352)TI3 (329-332)AH12 (371-383)AH13 (393-398)TIV11 (390-393)S2 (14-18)AH2 (49-61)S4 (64-66)S6 (82-83)TIV5 (148-151)S12 (205-207)3H3 (257-259)S22 (365-367)S20 (346-349)S23 (386-391)S1 (3-8)AH1 (23-32)S10 (156-158)AH9 (261-270)Updating...
connected with : NaN
molecule tags Transferase/antibiotic
source organism Vibrio fischeri
publication title Structure of MurA (UDP-N-acetylglucosamine enolpyruvyl transferase) from Vibrio fischeri in complex with substrate UDP-N-acetylglucosamine and the drug fosfomycin.
pubmed doi rcsb
molecule keywords UDP-N-acetylglucosamine 1-carboxyvinyltransferase
total genus 140
structure length 419
sequence length 419
chains with identical sequence B, C, D
ec nomenclature ec 2.5.1.7: UDP-N-acetylglucosamine 1-carboxyvinyltransferase.
pdb deposition date 2012-01-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00275 EPSP_synthase EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.65.10.10 Alpha Beta Alpha-beta prism UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain Enolpyruvate transferase domain 3vcyA02
3.65.10.10 Alpha Beta Alpha-beta prism UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain Enolpyruvate transferase domain 3vcyA01
4EGRA 3FJZA 1X8TA 2AAYA 2GG6A 2BJBA 1YBGA 4FQDA 1MI4A 3TR1A 2QFSA 5BQ2A 2O0EA 1EJDA 1P89A 1RF6A 3KR6A 3KQJA 3R38A 2O0DA 1A2NA 3V5VA 2YVWA 1NAWA 3SWGA 2GGDA 2RL1A 2O15A 3SU9A 2QFQA 1RF4A 2PQ9A 4E7EA 4E7GA 2O0XA 1RYWA 3NVSA 4EIIA 2AA9A 3LTHA 1Q3GA 4E7CA 4GFPA 4E7FA 2O0BA 5U4HA 3RMTA 4E7BA 3V4TA 3ZH4A 2PQDA 4R7UA 2PQCA 5BS5A 1EYNA 1RF5A 3FK1A 1Q36A 3ISSA 2PQBA 3ROIA 3SLHA 3SG1A 1G6TA 3SPBA 3SWAA 1DLGA 3FK0A 3VCYA 3SWIA 3FJXA 1G6SA 2Z2CA 4ZNDA 1EJCA 2QFTA 3KQAA 2GG4A 1UAEA 3ZH3A 3SWDA 1X8RA 2O0ZA 3TI2A 2RL2A 3SWEA 1P88A 3UPKA 4N3PA 3SWQA 5BUFA 2GGAA 2QFUA 4E7DA
chains in the Genus database with same CATH superfamily
4EGRA 3FJZA 1X8TA 2AAYA 1QMHA 3TUXA 2GG6A 2BJBA 1YBGA 4FQDA 1MI4A 3TR1A 4O89A 2QFSA 5BQ2A 2O0EA 1EJDA 3PQVA 1P89A 1RF6A 3KR6A 3KQJA 3R38A 2O0DA 1A2NA 3V5VA 2YVWA 1NAWA 3SWGA 2GGDA 2RL1A 2O15A 3SU9A 2QFQA 1RF4A 2PQ9A 4E7EA 4E7GA 2O0XA 3TUTA 1RYWA 3NVSA 4EIIA 2AA9A 3LTHA 1Q3GA 4E7CA 4GFPA 4E7FA 2O0BA 5U4HA 4CLQA 3RMTA 4E7BA 3V4TA 3ZH4A 2PQDA 4R7UA 2PQCA 5BS5A 3TW3A 1EYNA 1RF5A 3FK1A 1Q36A 3KGDA 3ISSA 2PQBA 3ROIA 3SLHA 3SG1A 1G6TA 3SPBA 3SWAA 1DLGA 3FK0A 3VCYA 3SWIA 3FJXA 1G6SA 2Z2CA 4ZNDA 1EJCA 2QFTA 3KQAA 2GG4A 1UAEA 3ZH3A 3SWDA 1X8RA 2O0ZA 3TI2A 2RL2A 3SWEA 1P88A 3UPKA 4O8JA 3TV1A 4N3PA 3SWQA 5BUFA 2GGAA 2QFUA 4E7DA 1QMIA
chains in the Genus database with same CATH topology
4EGRA 3FJZA 1X8TA 2AAYA 2GG6A 2BJBA 1YBGA 4FQDA 1MI4A 3TR1A 2QFSA 5BQ2A 2O0EA 1EJDA 1P89A 1RF6A 3KR6A 3KQJA 3R38A 2O0DA 1A2NA 3V5VA 2YVWA 1NAWA 3SWGA 2GGDA 2RL1A 2O15A 3SU9A 2QFQA 1RF4A 2PQ9A 4E7EA 4E7GA 2O0XA 1RYWA 3NVSA 4EIIA 2AA9A 3LTHA 1Q3GA 4E7CA 4GFPA 4E7FA 2O0BA 5U4HA 3RMTA 4E7BA 3V4TA 3ZH4A 2PQDA 4R7UA 2PQCA 5BS5A 1EYNA 1RF5A 3FK1A 1Q36A 3ISSA 2PQBA 3ROIA 3SLHA 3SG1A 1G6TA 3SPBA 3SWAA 1DLGA 3FK0A 3VCYA 3SWIA 3FJXA 1G6SA 2Z2CA 4ZNDA 1EJCA 2QFTA 3KQAA 2GG4A 1UAEA 3ZH3A 3SWDA 1X8RA 2O0ZA 3TI2A 2RL2A 3SWEA 1P88A 3UPKA 4N3PA 3SWQA 5BUFA 2GGAA 2QFUA 4E7DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4EGR A;  3FJZ A;  1X8T A;  2AAY A;  2GG6 A;  2BJB A;  1YBG A;  4FQD A;  1MI4 A;  3TR1 A;  2QFS A;  5BQ2 A;  2O0E A;  1EJD A;  1P89 A;  1RF6 A;  3KR6 A;  3KQJ A;  3R38 A;  2O0D A;  1A2N A;  3V5V A;  2YVW A;  1NAW A;  3SWG A;  2GGD A;  2RL1 A;  2O15 A;  3SU9 A;  2QFQ A;  1RF4 A;  2PQ9 A;  4E7E A;  4E7G A;  2O0X A;  1RYW A;  3NVS A;  4EII A;  2AA9 A;  3LTH A;  1Q3G A;  4E7C A;  4GFP A;  4E7F A;  2O0B A;  5U4H A;  3RMT A;  4E7B A;  3V4T A;  3ZH4 A;  2PQD A;  4R7U A;  2PQC A;  5BS5 A;  1EYN A;  1RF5 A;  3FK1 A;  1Q36 A;  3ISS A;  2PQB A;  3ROI A;  3SLH A;  3SG1 A;  1G6T A;  3SPB A;  3SWA A;  1DLG A;  3FK0 A;  3VCY A;  3SWI A;  3FJX A;  1G6S A;  2Z2C A;  4ZND A;  1EJC A;  2QFT A;  3KQA A;  2GG4 A;  1UAE A;  3ZH3 A;  3SWD A;  1X8R A;  2O0Z A;  3TI2 A;  2RL2 A;  3SWE A;  1P88 A;  3UPK A;  4N3P A;  3SWQ A;  5BUF A;  2GGA A;  2QFU A;  4E7D A; 
#chains in the Genus database with same CATH topology
 4EGR A;  3FJZ A;  1X8T A;  2AAY A;  1QMH A;  3TUX A;  2GG6 A;  2BJB A;  1YBG A;  4FQD A;  1MI4 A;  3TR1 A;  4O89 A;  2QFS A;  5BQ2 A;  2O0E A;  1EJD A;  3PQV A;  1P89 A;  1RF6 A;  3KR6 A;  3KQJ A;  3R38 A;  2O0D A;  1A2N A;  3V5V A;  2YVW A;  1NAW A;  3SWG A;  2GGD A;  2RL1 A;  2O15 A;  3SU9 A;  2QFQ A;  1RF4 A;  2PQ9 A;  4E7E A;  4E7G A;  2O0X A;  3TUT A;  1RYW A;  3NVS A;  4EII A;  2AA9 A;  3LTH A;  1Q3G A;  4E7C A;  4GFP A;  4E7F A;  2O0B A;  5U4H A;  4CLQ A;  3RMT A;  4E7B A;  3V4T A;  3ZH4 A;  2PQD A;  4R7U A;  2PQC A;  5BS5 A;  3TW3 A;  1EYN A;  1RF5 A;  3FK1 A;  1Q36 A;  3KGD A;  3ISS A;  2PQB A;  3ROI A;  3SLH A;  3SG1 A;  1G6T A;  3SPB A;  3SWA A;  1DLG A;  3FK0 A;  3VCY A;  3SWI A;  3FJX A;  1G6S A;  2Z2C A;  4ZND A;  1EJC A;  2QFT A;  3KQA A;  2GG4 A;  1UAE A;  3ZH3 A;  3SWD A;  1X8R A;  2O0Z A;  3TI2 A;  2RL2 A;  3SWE A;  1P88 A;  3UPK A;  4O8J A;  3TV1 A;  4N3P A;  3SWQ A;  5BUF A;  2GGA A;  2QFU A;  4E7D A;  1QMI A; 
#chains in the Genus database with same CATH homology
 4EGR A;  3FJZ A;  1X8T A;  2AAY A;  2GG6 A;  2BJB A;  1YBG A;  4FQD A;  1MI4 A;  3TR1 A;  2QFS A;  5BQ2 A;  2O0E A;  1EJD A;  1P89 A;  1RF6 A;  3KR6 A;  3KQJ A;  3R38 A;  2O0D A;  1A2N A;  3V5V A;  2YVW A;  1NAW A;  3SWG A;  2GGD A;  2RL1 A;  2O15 A;  3SU9 A;  2QFQ A;  1RF4 A;  2PQ9 A;  4E7E A;  4E7G A;  2O0X A;  1RYW A;  3NVS A;  4EII A;  2AA9 A;  3LTH A;  1Q3G A;  4E7C A;  4GFP A;  4E7F A;  2O0B A;  5U4H A;  3RMT A;  4E7B A;  3V4T A;  3ZH4 A;  2PQD A;  4R7U A;  2PQC A;  5BS5 A;  1EYN A;  1RF5 A;  3FK1 A;  1Q36 A;  3ISS A;  2PQB A;  3ROI A;  3SLH A;  3SG1 A;  1G6T A;  3SPB A;  3SWA A;  1DLG A;  3FK0 A;  3VCY A;  3SWI A;  3FJX A;  1G6S A;  2Z2C A;  4ZND A;  1EJC A;  2QFT A;  3KQA A;  2GG4 A;  1UAE A;  3ZH3 A;  3SWD A;  1X8R A;  2O0Z A;  3TI2 A;  2RL2 A;  3SWE A;  1P88 A;  3UPK A;  4N3P A;  3SWQ A;  5BUF A;  2GGA A;  2QFU A;  4E7D A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.