4K2FA

Structure of pseudomonas aeruginosa pvdq bound to brd-a08522488
Total Genus 55

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
sequence length
164
structure length
164
Chain Sequence
TGLAADIRWTAYGVPHIRAKDERGLGYGIGYAYARDNACLLAEEIVTARGERARYFGSEGKSSAELDNLPSDIFYAWLNQPEALQAFWQAQTPAVRQLLEGYAAGFNRFLREADGKTTSCLGQPWLRAIATDDLLRLTRRLLVEGGVGQFADALVAAAPPGAEK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH3 (96-107)EMPTYO1 (67-148)S1 (34-38)AH4 (109-118)TII1 (38-41)S2 (42-46)AH5 (121-140)AH2 (79-84)AH1 (50-77)TI1 (85-88)TI2 (90-93)TI3 (143-146)TI5 (151-154)TII2 (148-151)AH6 (159-172)TI4 (146-149)Updating...
connected with : NaN
molecule tags Hydrolase/hydrolase inhibitor
source organism Pseudomonas aeruginosa
publication title Identification of Inhibitors of PvdQ, an Enzyme Involved in the Synthesis of the Siderophore Pyoverdine.
pubmed doi rcsb
molecule keywords Acyl-homoserine lactone acylase PvdQ
total genus 55
structure length 164
sequence length 164
ec nomenclature ec 3.5.1.97: Acyl-homoserine-lactone acylase.
pdb deposition date 2013-04-09
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.439.10 Mainly Alpha Orthogonal Bundle Penicillin Amidohydrolase; domain 1 Penicillin Amidohydrolase, domain 1 4k2fA00
2WYDA 1FXVA 1FXHA 1GK0A 1GM9A 1KEHA 3K3WA 3L94A 4YF9A 4M1JA 1JW0A 4BTHA 4WKSA 3SRAA 1PNKA 1JX9A 1PNLA 3JTQA 3S8RA 1GK1A 1AI5A 4E55A 4YFAA 1AI4A 1AI7A 1GK9A 1OR0A 4HSTA 2WYBA 1AI6A 4PEMA 3SRBA 3ML0A 3JTRA 1K5QA 2ADVA 4PELA 1E3AA 1AJNA 2AE3A 2AE4A 3L91A 1K7DA 1GHDA 1GM8A 1K5SA 1GM7A 3SRCA 1AJPA 1CP9A 4WKVA 1H2GA 1GKFA 4YFBA 4K2FA 4E56A 1PNMA 2AE5A 4K2GA 4E57A 1AJQA 2WYEA 1FM2A 4HSRA 4WKUA 1KECA 2WYCA 4WKTA 1JVZA
chains in the Genus database with same CATH superfamily
2WYDA 1FXVA 1FXHA 1GK0A 1GM9A 1KEHA 3K3WA 3L94A 4YF9A 4M1JA 1JW0A 4BTHA 4WKSA 3SRAA 1PNKA 1JX9A 1PNLA 3JTQA 3S8RA 1GK1A 1AI5A 4E55A 4YFAA 1AI4A 1AI7A 1GK9A 1OR0A 4HSTA 2WYBA 1AI6A 4PEMA 3SRBA 3ML0A 3JTRA 1K5QA 2ADVA 4PELA 1E3AA 1AJNA 2AE3A 2AE4A 3FGRA 1K7DA 1GHDA 1GM8A 1K5SA 1GM7A 3L91A 3SRCA 4BWCA 1AJPA 1CP9A 4WKVA 1H2GA 1GKFA 4YFBA 4K2FA 4E56A 1PNMA 3FGTA 2AE5A 4K2GA 4E57A 1AJQA 2WYEA 1FM2A 4HSRA 4WKUA 1KECA 2WYCA 4WKTA 1JVZA
chains in the Genus database with same CATH topology
2WYDA 1FXVA 1FXHA 1GK0A 1GM9A 1KEHA 3K3WA 3L94A 4YF9A 4M1JA 1JW0A 4BTHA 4WKSA 3SRAA 1PNKA 1JX9A 1PNLA 3JTQA 3S8RA 1GK1A 1AI5A 4E55A 4YFAA 1AI4A 1AI7A 1GK9A 1OR0A 4HSTA 2WYBA 1AI6A 4PEMA 3SRBA 3ML0A 3JTRA 1K5QA 2ADVA 4PELA 1E3AA 1AJNA 2AE3A 2AE4A 3L91A 1K7DA 1GHDA 1GM8A 1K5SA 1GM7A 3SRCA 1AJPA 1CP9A 4WKVA 1H2GA 1GKFA 4YFBA 4K2FA 4E56A 1PNMA 2AE5A 4K2GA 4E57A 1AJQA 2WYEA 1FM2A 4HSRA 4WKUA 1KECA 2WYCA 4WKTA 1JVZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2WYD A;  1FXV A;  1FXH A;  1GK0 A;  1GM9 A;  1KEH A;  3K3W A;  3L94 A;  4YF9 A;  4M1J A;  1JW0 A;  4BTH A;  4WKS A;  3SRA A;  1PNK A;  1JX9 A;  1PNL A;  3JTQ A;  3S8R A;  1GK1 A;  1AI5 A;  4E55 A;  4YFA A;  1AI4 A;  1AI7 A;  1GK9 A;  1OR0 A;  4HST A;  2WYB A;  1AI6 A;  4PEM A;  3SRB A;  3ML0 A;  3JTR A;  1K5Q A;  2ADV A;  4PEL A;  1E3A A;  1AJN A;  2AE3 A;  2AE4 A;  3L91 A;  1K7D A;  1GHD A;  1GM8 A;  1K5S A;  1GM7 A;  3SRC A;  1AJP A;  1CP9 A;  4WKV A;  1H2G A;  1GKF A;  4YFB A;  4K2F A;  4E56 A;  1PNM A;  2AE5 A;  4K2G A;  4E57 A;  1AJQ A;  2WYE A;  1FM2 A;  4HSR A;  4WKU A;  1KEC A;  2WYC A;  4WKT A;  1JVZ A; 
#chains in the Genus database with same CATH topology
 2WYD A;  1FXV A;  1FXH A;  1GK0 A;  1GM9 A;  1KEH A;  3K3W A;  3L94 A;  4YF9 A;  4M1J A;  1JW0 A;  4BTH A;  4WKS A;  3SRA A;  1PNK A;  1JX9 A;  1PNL A;  3JTQ A;  3S8R A;  1GK1 A;  1AI5 A;  4E55 A;  4YFA A;  1AI4 A;  1AI7 A;  1GK9 A;  1OR0 A;  4HST A;  2WYB A;  1AI6 A;  4PEM A;  3SRB A;  3ML0 A;  3JTR A;  1K5Q A;  2ADV A;  4PEL A;  1E3A A;  1AJN A;  2AE3 A;  2AE4 A;  3FGR A;  1K7D A;  1GHD A;  1GM8 A;  1K5S A;  1GM7 A;  3L91 A;  3SRC A;  4BWC A;  1AJP A;  1CP9 A;  4WKV A;  1H2G A;  1GKF A;  4YFB A;  4K2F A;  4E56 A;  1PNM A;  3FGT A;  2AE5 A;  4K2G A;  4E57 A;  1AJQ A;  2WYE A;  1FM2 A;  4HSR A;  4WKU A;  1KEC A;  2WYC A;  4WKT A;  1JVZ A; 
#chains in the Genus database with same CATH homology
 2WYD A;  1FXV A;  1FXH A;  1GK0 A;  1GM9 A;  1KEH A;  3K3W A;  3L94 A;  4YF9 A;  4M1J A;  1JW0 A;  4BTH A;  4WKS A;  3SRA A;  1PNK A;  1JX9 A;  1PNL A;  3JTQ A;  3S8R A;  1GK1 A;  1AI5 A;  4E55 A;  4YFA A;  1AI4 A;  1AI7 A;  1GK9 A;  1OR0 A;  4HST A;  2WYB A;  1AI6 A;  4PEM A;  3SRB A;  3ML0 A;  3JTR A;  1K5Q A;  2ADV A;  4PEL A;  1E3A A;  1AJN A;  2AE3 A;  2AE4 A;  3L91 A;  1K7D A;  1GHD A;  1GM8 A;  1K5S A;  1GM7 A;  3SRC A;  1AJP A;  1CP9 A;  4WKV A;  1H2G A;  1GKF A;  4YFB A;  4K2F A;  4E56 A;  1PNM A;  2AE5 A;  4K2G A;  4E57 A;  1AJQ A;  2WYE A;  1FM2 A;  4HSR A;  4WKU A;  1KEC A;  2WYC A;  4WKT A;  1JVZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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