4K2GA

Structure of pseudomonas aeruginosa pvdq bound to brd-a33442372
Total Genus 55

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
sequence length
164
structure length
164
Chain Sequence
TGLAADIRWTAYGVPHIRAKDERGLGYGIGYAYARDNACLLAEEIVTARGERARYFGSEGKSSAELDNLPSDIFYAWLNQPEALQAFWQAQTPAVRQLLEGYAAGFNRFLREADGKTTSCLGQPWLRAIATDDLLRLTRRLLVEGGVGQFADALVAAAPPGAEK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH3 (96-107)EMPTYO1 (67-148)AH4 (109-118)S1 (34-38)TII1 (38-41)S2 (42-46)AH5 (121-140)AH2 (79-84)AH1 (50-77)TI1 (85-88)TI2 (90-93)TI3 (143-146)TI5 (151-154)TII2 (148-151)AH6 (159-171)TI4 (146-149)Updating...
connected with : NaN
molecule tags Hydrolase/hydrolase inhibitor
source organism Pseudomonas aeruginosa
publication title Identification of Inhibitors of PvdQ, an Enzyme Involved in the Synthesis of the Siderophore Pyoverdine.
pubmed doi rcsb
molecule keywords Acyl-homoserine lactone acylase PvdQ
total genus 55
structure length 164
sequence length 164
ec nomenclature ec 3.5.1.97: Acyl-homoserine-lactone acylase.
pdb deposition date 2013-04-09
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.439.10 Mainly Alpha Orthogonal Bundle Penicillin Amidohydrolase; domain 1 Penicillin Amidohydrolase, domain 1 4k2gA00
1OR0A 3SRBA 4YF9A 3JTQA 1PNKA 2AE3A 4YFAA 1FXVA 4WKVA 4YFBA 2WYDA 4WKTA 1AJQA 1FXHA 2ADVA 2WYEA 4HSRA 1PNLA 3ML0A 4M1JA 4BTHA 1AJNA 3S8RA 4PELA 1CP9A 1GK0A 1E3AA 1GK9A 4E56A 1GKFA 1GM7A 3SRAA 1KECA 1H2GA 2AE5A 2WYCA 3L94A 4K2FA 1K5SA 1JW0A 2WYBA 1K5QA 1GK1A 4E55A 3JTRA 1FM2A 1GM9A 1K7DA 2AE4A 4WKUA 1PNMA 4PEMA 1AI6A 1AI7A 1GM8A 1JX9A 1GHDA 4WKSA 3L91A 1AI5A 1AI4A 1JVZA 1KEHA 3K3WA 4HSTA 4K2GA 3SRCA 1AJPA 4E57A
chains in the Genus database with same CATH superfamily
1OR0A 3SRBA 4YF9A 3JTQA 1PNKA 2AE3A 4YFAA 1FXVA 3FGTA 4WKVA 4YFBA 2WYDA 4WKTA 1AJQA 1FXHA 2ADVA 2WYEA 4HSRA 1PNLA 3ML0A 4M1JA 4BTHA 1AJNA 3S8RA 4PELA 1CP9A 1GK0A 1E3AA 1GK9A 4E56A 1GKFA 3FGRA 1GM7A 3SRAA 1KECA 1H2GA 2AE5A 2WYCA 3L94A 4K2FA 1K5SA 1JW0A 2WYBA 1K5QA 1GK1A 4E55A 3JTRA 4BWCA 1FM2A 1GM9A 1K7DA 2AE4A 4WKUA 1PNMA 4PEMA 1AI6A 1AI7A 1GM8A 1JX9A 1GHDA 4WKSA 3L91A 1AI5A 1AI4A 1JVZA 1KEHA 3K3WA 4HSTA 4K2GA 3SRCA 1AJPA 4E57A
chains in the Genus database with same CATH topology
1OR0A 3SRBA 4YF9A 3JTQA 1PNKA 2AE3A 4YFAA 1FXVA 4WKVA 4YFBA 2WYDA 4WKTA 1AJQA 1FXHA 2ADVA 2WYEA 4HSRA 1PNLA 3ML0A 4M1JA 4BTHA 1AJNA 3S8RA 4PELA 1CP9A 1GK0A 1E3AA 1GK9A 4E56A 1GKFA 1GM7A 3SRAA 1KECA 1H2GA 2AE5A 2WYCA 3L94A 4K2FA 1K5SA 1JW0A 2WYBA 1K5QA 1GK1A 4E55A 3JTRA 1FM2A 1GM9A 1K7DA 2AE4A 4WKUA 1PNMA 4PEMA 1AI6A 1AI7A 1GM8A 1JX9A 1GHDA 4WKSA 3L91A 1AI5A 1AI4A 1JVZA 1KEHA 3K3WA 4HSTA 4K2GA 3SRCA 1AJPA 4E57A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1OR0 A;  3SRB A;  4YF9 A;  3JTQ A;  1PNK A;  2AE3 A;  4YFA A;  1FXV A;  4WKV A;  4YFB A;  2WYD A;  4WKT A;  1AJQ A;  1FXH A;  2ADV A;  2WYE A;  4HSR A;  1PNL A;  3ML0 A;  4M1J A;  4BTH A;  1AJN A;  3S8R A;  4PEL A;  1CP9 A;  1GK0 A;  1E3A A;  1GK9 A;  4E56 A;  1GKF A;  1GM7 A;  3SRA A;  1KEC A;  1H2G A;  2AE5 A;  2WYC A;  3L94 A;  4K2F A;  1K5S A;  1JW0 A;  2WYB A;  1K5Q A;  1GK1 A;  4E55 A;  3JTR A;  1FM2 A;  1GM9 A;  1K7D A;  2AE4 A;  4WKU A;  1PNM A;  4PEM A;  1AI6 A;  1AI7 A;  1GM8 A;  1JX9 A;  1GHD A;  4WKS A;  3L91 A;  1AI5 A;  1AI4 A;  1JVZ A;  1KEH A;  3K3W A;  4HST A;  4K2G A;  3SRC A;  1AJP A;  4E57 A; 
#chains in the Genus database with same CATH topology
 1OR0 A;  3SRB A;  4YF9 A;  3JTQ A;  1PNK A;  2AE3 A;  4YFA A;  1FXV A;  3FGT A;  4WKV A;  4YFB A;  2WYD A;  4WKT A;  1AJQ A;  1FXH A;  2ADV A;  2WYE A;  4HSR A;  1PNL A;  3ML0 A;  4M1J A;  4BTH A;  1AJN A;  3S8R A;  4PEL A;  1CP9 A;  1GK0 A;  1E3A A;  1GK9 A;  4E56 A;  1GKF A;  3FGR A;  1GM7 A;  3SRA A;  1KEC A;  1H2G A;  2AE5 A;  2WYC A;  3L94 A;  4K2F A;  1K5S A;  1JW0 A;  2WYB A;  1K5Q A;  1GK1 A;  4E55 A;  3JTR A;  4BWC A;  1FM2 A;  1GM9 A;  1K7D A;  2AE4 A;  4WKU A;  1PNM A;  4PEM A;  1AI6 A;  1AI7 A;  1GM8 A;  1JX9 A;  1GHD A;  4WKS A;  3L91 A;  1AI5 A;  1AI4 A;  1JVZ A;  1KEH A;  3K3W A;  4HST A;  4K2G A;  3SRC A;  1AJP A;  4E57 A; 
#chains in the Genus database with same CATH homology
 1OR0 A;  3SRB A;  4YF9 A;  3JTQ A;  1PNK A;  2AE3 A;  4YFA A;  1FXV A;  4WKV A;  4YFB A;  2WYD A;  4WKT A;  1AJQ A;  1FXH A;  2ADV A;  2WYE A;  4HSR A;  1PNL A;  3ML0 A;  4M1J A;  4BTH A;  1AJN A;  3S8R A;  4PEL A;  1CP9 A;  1GK0 A;  1E3A A;  1GK9 A;  4E56 A;  1GKF A;  1GM7 A;  3SRA A;  1KEC A;  1H2G A;  2AE5 A;  2WYC A;  3L94 A;  4K2F A;  1K5S A;  1JW0 A;  2WYB A;  1K5Q A;  1GK1 A;  4E55 A;  3JTR A;  1FM2 A;  1GM9 A;  1K7D A;  2AE4 A;  4WKU A;  1PNM A;  4PEM A;  1AI6 A;  1AI7 A;  1GM8 A;  1JX9 A;  1GHD A;  4WKS A;  3L91 A;  1AI5 A;  1AI4 A;  1JVZ A;  1KEH A;  3K3W A;  4HST A;  4K2G A;  3SRC A;  1AJP A;  4E57 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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