4PEMA

Crystal structure of s1g mutant of penicillin g acylase from kluyvera citrophila
Total Genus 64

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
64
sequence length
258
structure length
235
Chain Sequence
PPTEVIVRDYGMPHIYADDYLFYGYGYVVAQDRLFQMEMARRSTQGTVSEVLGAFVFDKIRNYWPDSIRAQIASLSAEDKSILQGYADGMNAWDKVNASPLLPQQFSTFGFPKHWEPFDVAMIFVGTMANRFSDSTSEDNLALLTALKDKYGKQQGMAVFNQLKWLVNPSAPTTIAARSAYPLKTAALLPRYDPAPMLDRAKGTDGALLALTADQNRETIAAQFAQSGANGLAGY

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (27-51)O1 (59-62)AH2 (54-58)EMPTY3H1 (63-66)AH6 (131-147)TIV5 (192-196)TIV4 (188-191)TI2 (183-186)TVIII1 (180-183)3H3 (209-211)TI3 (228-231)TIV1 (11-15)S1 (10-11)AH3 (75-84)AH4 (87-102)3H2 (103-109)AH5 (117-122)AH7 (154-166)TIV3 (66-70)AH8 (168-178)3H4 (220-222)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Kluyvera cryocrescens
publication title Crystal Structure of S1G mutant of Penicillin G Acylase from Kluyvera citrophilla
rcsb
molecule keywords Penicillin G acylase Alpha
total genus 64
structure length 235
sequence length 258
chains with identical sequence C, E, G
ec nomenclature
pdb deposition date 2014-04-24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.439.10 Mainly Alpha Orthogonal Bundle Penicillin Amidohydrolase; domain 1 Penicillin Amidohydrolase, domain 1 4pemA01
1AJNA 1PNMA 4E56A 3ML0A 1PNKA 1PNLA 1FXHA 1FXVA 4WKTA 4WKVA 4YF9A 3JTRA 2WYDA 2WYBA 4PELA 4YFAA 1JW0A 4WKSA 1K5QA 1K7DA 1AI5A 2WYEA 4K2FA 4BTHA 1KEHA 1FM2A 4HSTA 2AE4A 4E55A 1GK0A 2ADVA 1AI6A 3JTQA 1GM8A 3K3WA 4YFBA 1JVZA 2WYCA 3S8RA 3L94A 2AE3A 4E57A 1AI4A 1OR0A 1KECA 1JX9A 4K2GA 1GM9A 1CP9A 1AI7A 3SRCA 1AJPA 1AJQA 1H2GA 4WKUA 1GM7A 3SRBA 4HSRA 1GKFA 1GHDA 1K5SA 1GK9A 4M1JA 1E3AA 2AE5A 3SRAA 4PEMA 1GK1A 3L91A
chains in the Genus database with same CATH superfamily
1AJNA 1PNMA 4E56A 3ML0A 4E57A 1PNKA 1PNLA 3FGTA 3FGRA 1FXHA 1FXVA 4WKTA 4WKVA 4YF9A 3JTRA 2WYDA 2WYBA 4PELA 4YFAA 1JW0A 4WKSA 1K5QA 1K7DA 1AI5A 2WYEA 4K2FA 4BTHA 1KEHA 1FM2A 4HSTA 2AE4A 4E55A 1GK0A 2ADVA 1AI6A 3JTQA 1GM8A 3K3WA 4YFBA 1JVZA 2WYCA 3S8RA 3L94A 2AE3A 4BWCA 1AI4A 1OR0A 1KECA 1JX9A 4K2GA 1GM9A 1CP9A 1AI7A 3SRCA 1AJPA 1AJQA 1H2GA 4WKUA 1GM7A 3SRBA 4HSRA 1GKFA 1GHDA 1K5SA 1GK9A 4M1JA 1E3AA 2AE5A 3SRAA 4PEMA 1GK1A 3L91A
chains in the Genus database with same CATH topology
1AJNA 1PNMA 4E56A 3ML0A 1PNKA 1PNLA 1FXHA 1FXVA 4WKTA 4WKVA 4YF9A 3JTRA 2WYDA 2WYBA 4PELA 4YFAA 1JW0A 4WKSA 1K5QA 1K7DA 1AI5A 2WYEA 4K2FA 4BTHA 1KEHA 1FM2A 4HSTA 2AE4A 4E55A 1GK0A 2ADVA 1AI6A 3JTQA 1GM8A 3K3WA 4YFBA 1JVZA 2WYCA 3S8RA 3L94A 2AE3A 4E57A 1AI4A 1OR0A 1KECA 1JX9A 4K2GA 1GM9A 1CP9A 1AI7A 3SRCA 1AJPA 1AJQA 1H2GA 4WKUA 1GM7A 3SRBA 4HSRA 1GKFA 1GHDA 1K5SA 1GK9A 4M1JA 1E3AA 2AE5A 3SRAA 4PEMA 1GK1A 3L91A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1AJN A;  1PNM A;  4E56 A;  3ML0 A;  1PNK A;  1PNL A;  1FXH A;  1FXV A;  4WKT A;  4WKV A;  4YF9 A;  3JTR A;  2WYD A;  2WYB A;  4PEL A;  4YFA A;  1JW0 A;  4WKS A;  1K5Q A;  1K7D A;  1AI5 A;  2WYE A;  4K2F A;  4BTH A;  1KEH A;  1FM2 A;  4HST A;  2AE4 A;  4E55 A;  1GK0 A;  2ADV A;  1AI6 A;  3JTQ A;  1GM8 A;  3K3W A;  4YFB A;  1JVZ A;  2WYC A;  3S8R A;  3L94 A;  2AE3 A;  4E57 A;  1AI4 A;  1OR0 A;  1KEC A;  1JX9 A;  4K2G A;  1GM9 A;  1CP9 A;  1AI7 A;  3SRC A;  1AJP A;  1AJQ A;  1H2G A;  4WKU A;  1GM7 A;  3SRB A;  4HSR A;  1GKF A;  1GHD A;  1K5S A;  1GK9 A;  4M1J A;  1E3A A;  2AE5 A;  3SRA A;  4PEM A;  1GK1 A;  3L91 A; 
#chains in the Genus database with same CATH topology
 1AJN A;  1PNM A;  4E56 A;  3ML0 A;  4E57 A;  1PNK A;  1PNL A;  3FGT A;  3FGR A;  1FXH A;  1FXV A;  4WKT A;  4WKV A;  4YF9 A;  3JTR A;  2WYD A;  2WYB A;  4PEL A;  4YFA A;  1JW0 A;  4WKS A;  1K5Q A;  1K7D A;  1AI5 A;  2WYE A;  4K2F A;  4BTH A;  1KEH A;  1FM2 A;  4HST A;  2AE4 A;  4E55 A;  1GK0 A;  2ADV A;  1AI6 A;  3JTQ A;  1GM8 A;  3K3W A;  4YFB A;  1JVZ A;  2WYC A;  3S8R A;  3L94 A;  2AE3 A;  4BWC A;  1AI4 A;  1OR0 A;  1KEC A;  1JX9 A;  4K2G A;  1GM9 A;  1CP9 A;  1AI7 A;  3SRC A;  1AJP A;  1AJQ A;  1H2G A;  4WKU A;  1GM7 A;  3SRB A;  4HSR A;  1GKF A;  1GHD A;  1K5S A;  1GK9 A;  4M1J A;  1E3A A;  2AE5 A;  3SRA A;  4PEM A;  1GK1 A;  3L91 A; 
#chains in the Genus database with same CATH homology
 1AJN A;  1PNM A;  4E56 A;  3ML0 A;  1PNK A;  1PNL A;  1FXH A;  1FXV A;  4WKT A;  4WKV A;  4YF9 A;  3JTR A;  2WYD A;  2WYB A;  4PEL A;  4YFA A;  1JW0 A;  4WKS A;  1K5Q A;  1K7D A;  1AI5 A;  2WYE A;  4K2F A;  4BTH A;  1KEH A;  1FM2 A;  4HST A;  2AE4 A;  4E55 A;  1GK0 A;  2ADV A;  1AI6 A;  3JTQ A;  1GM8 A;  3K3W A;  4YFB A;  1JVZ A;  2WYC A;  3S8R A;  3L94 A;  2AE3 A;  4E57 A;  1AI4 A;  1OR0 A;  1KEC A;  1JX9 A;  4K2G A;  1GM9 A;  1CP9 A;  1AI7 A;  3SRC A;  1AJP A;  1AJQ A;  1H2G A;  4WKU A;  1GM7 A;  3SRB A;  4HSR A;  1GKF A;  1GHD A;  1K5S A;  1GK9 A;  4M1J A;  1E3A A;  2AE5 A;  3SRA A;  4PEM A;  1GK1 A;  3L91 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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