4WKTA

N-alkylboronic acid inhibitors reveal determinants of ligand specificity in the quorum-quenching and siderophore biosynthetic enzyme pvdq
Total Genus 55

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
sequence length
165
structure length
165
Chain Sequence
PTGLAADIRWTAYGVPHIRAKDERGLGYGIGYAYARDNACLLAEEIVTARGERARYFGSEGKSSAELDNLPSDIFYAWLNQPEALQAFWQAQTPAVRQLLEGYAAGFNRFLREADGKTTSCLGQPWLRAIATDDLLRLTRRLLVEGGVGQFADALVAAAPPGAEK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH3 (96-107)EMPTYAH4 (109-118)S1 (34-38)TII1 (38-41)S2 (42-46)O3 (67-148)AH2 (79-84)AH1 (50-77)AH5 (121-140)TI1 (85-88)TI2 (90-93)TI3 (143-146)TII2 (148-151)TI4 (146-149)TI5 (151-154)TVIII1 (152-155)AH6 (159-171)Updating...
connected with : NaN
molecule tags Hydrolase/hydrolase inhibitor
source organism Pseudomonas aeruginosa
publication title n-Alkylboronic Acid Inhibitors Reveal Determinants of Ligand Specificity in the Quorum-Quenching and Siderophore Biosynthetic Enzyme PvdQ.
pubmed doi rcsb
molecule keywords Acyl-homoserine lactone acylase PvdQ
total genus 55
structure length 165
sequence length 165
ec nomenclature ec 3.5.1.97: Acyl-homoserine-lactone acylase.
pdb deposition date 2014-10-03
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.439.10 Mainly Alpha Orthogonal Bundle Penicillin Amidohydrolase; domain 1 Penicillin Amidohydrolase, domain 1 4wktA00
3SRAA 1GK9A 4YF9A 4K2FA 1K5QA 2AE4A 1K7DA 2WYDA 4M1JA 4YFAA 1KECA 1AI5A 4WKUA 1FXHA 4PELA 4WKVA 1AJNA 2WYCA 2WYEA 1GM8A 3K3WA 3L91A 4WKTA 1AJPA 1AI4A 2AE5A 4HSRA 1JW0A 4WKSA 1GKFA 1AI7A 1GM7A 2ADVA 1KEHA 1FXVA 4YFBA 3SRBA 4E55A 1GK0A 3S8RA 4E56A 1E3AA 1PNLA 1K5SA 4E57A 1PNMA 1GK1A 3ML0A 2AE3A 1AJQA 3SRCA 1CP9A 2WYBA 1H2GA 1OR0A 4K2GA 1GHDA 1FM2A 1JX9A 1JVZA 3JTRA 4HSTA 1PNKA 1GM9A 1AI6A 3JTQA 4PEMA 4BTHA 3L94A
chains in the Genus database with same CATH superfamily
3SRAA 1GK9A 4YF9A 4K2FA 1K5QA 2AE4A 1K7DA 2WYDA 4M1JA 4YFAA 1KECA 3FGRA 1AI5A 4WKUA 1FXHA 4PELA 4WKVA 1AJNA 2WYCA 2WYEA 1GM8A 3K3WA 3L91A 4WKTA 4BWCA 1AJPA 1AI4A 2AE5A 3FGTA 1JW0A 4HSRA 1GKFA 1AI7A 1GM7A 2ADVA 1KEHA 1FXVA 4WKSA 3SRBA 4E55A 1GK0A 3S8RA 4E56A 1E3AA 1PNLA 1K5SA 4E57A 4YFBA 1PNMA 1GK1A 3ML0A 2AE3A 1AJQA 3SRCA 1CP9A 2WYBA 1H2GA 1OR0A 4K2GA 1GHDA 1FM2A 1JX9A 1JVZA 3JTRA 4HSTA 1PNKA 1GM9A 1AI6A 3JTQA 4PEMA 4BTHA 3L94A
chains in the Genus database with same CATH topology
3SRAA 1GK9A 4YF9A 4K2FA 1K5QA 2AE4A 1K7DA 2WYDA 4M1JA 4YFAA 1KECA 1AI5A 4WKUA 1FXHA 4PELA 4WKVA 1AJNA 2WYCA 2WYEA 1GM8A 3K3WA 3L91A 4WKTA 1AJPA 1AI4A 2AE5A 4HSRA 1JW0A 4WKSA 1GKFA 1AI7A 1GM7A 2ADVA 1KEHA 1FXVA 4YFBA 3SRBA 4E55A 1GK0A 3S8RA 4E56A 1E3AA 1PNLA 1K5SA 4E57A 1PNMA 1GK1A 3ML0A 2AE3A 1AJQA 3SRCA 1CP9A 2WYBA 1H2GA 1OR0A 4K2GA 1GHDA 1FM2A 1JX9A 1JVZA 3JTRA 4HSTA 1PNKA 1GM9A 1AI6A 3JTQA 4PEMA 4BTHA 3L94A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SRA A;  1GK9 A;  4YF9 A;  4K2F A;  1K5Q A;  2AE4 A;  1K7D A;  2WYD A;  4M1J A;  4YFA A;  1KEC A;  1AI5 A;  4WKU A;  1FXH A;  4PEL A;  4WKV A;  1AJN A;  2WYC A;  2WYE A;  1GM8 A;  3K3W A;  3L91 A;  4WKT A;  1AJP A;  1AI4 A;  2AE5 A;  4HSR A;  1JW0 A;  4WKS A;  1GKF A;  1AI7 A;  1GM7 A;  2ADV A;  1KEH A;  1FXV A;  4YFB A;  3SRB A;  4E55 A;  1GK0 A;  3S8R A;  4E56 A;  1E3A A;  1PNL A;  1K5S A;  4E57 A;  1PNM A;  1GK1 A;  3ML0 A;  2AE3 A;  1AJQ A;  3SRC A;  1CP9 A;  2WYB A;  1H2G A;  1OR0 A;  4K2G A;  1GHD A;  1FM2 A;  1JX9 A;  1JVZ A;  3JTR A;  4HST A;  1PNK A;  1GM9 A;  1AI6 A;  3JTQ A;  4PEM A;  4BTH A;  3L94 A; 
#chains in the Genus database with same CATH topology
 3SRA A;  1GK9 A;  4YF9 A;  4K2F A;  1K5Q A;  2AE4 A;  1K7D A;  2WYD A;  4M1J A;  4YFA A;  1KEC A;  3FGR A;  1AI5 A;  4WKU A;  1FXH A;  4PEL A;  4WKV A;  1AJN A;  2WYC A;  2WYE A;  1GM8 A;  3K3W A;  3L91 A;  4WKT A;  4BWC A;  1AJP A;  1AI4 A;  2AE5 A;  3FGT A;  1JW0 A;  4HSR A;  1GKF A;  1AI7 A;  1GM7 A;  2ADV A;  1KEH A;  1FXV A;  4WKS A;  3SRB A;  4E55 A;  1GK0 A;  3S8R A;  4E56 A;  1E3A A;  1PNL A;  1K5S A;  4E57 A;  4YFB A;  1PNM A;  1GK1 A;  3ML0 A;  2AE3 A;  1AJQ A;  3SRC A;  1CP9 A;  2WYB A;  1H2G A;  1OR0 A;  4K2G A;  1GHD A;  1FM2 A;  1JX9 A;  1JVZ A;  3JTR A;  4HST A;  1PNK A;  1GM9 A;  1AI6 A;  3JTQ A;  4PEM A;  4BTH A;  3L94 A; 
#chains in the Genus database with same CATH homology
 3SRA A;  1GK9 A;  4YF9 A;  4K2F A;  1K5Q A;  2AE4 A;  1K7D A;  2WYD A;  4M1J A;  4YFA A;  1KEC A;  1AI5 A;  4WKU A;  1FXH A;  4PEL A;  4WKV A;  1AJN A;  2WYC A;  2WYE A;  1GM8 A;  3K3W A;  3L91 A;  4WKT A;  1AJP A;  1AI4 A;  2AE5 A;  4HSR A;  1JW0 A;  4WKS A;  1GKF A;  1AI7 A;  1GM7 A;  2ADV A;  1KEH A;  1FXV A;  4YFB A;  3SRB A;  4E55 A;  1GK0 A;  3S8R A;  4E56 A;  1E3A A;  1PNL A;  1K5S A;  4E57 A;  1PNM A;  1GK1 A;  3ML0 A;  2AE3 A;  1AJQ A;  3SRC A;  1CP9 A;  2WYB A;  1H2G A;  1OR0 A;  4K2G A;  1GHD A;  1FM2 A;  1JX9 A;  1JVZ A;  3JTR A;  4HST A;  1PNK A;  1GM9 A;  1AI6 A;  3JTQ A;  4PEM A;  4BTH A;  3L94 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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