4WKUA

N-alkylboronic acid inhibitors reveal determinants of ligand specificity in the quorum-quenching and siderophore biosynthetic enzyme pvdq
Total Genus 53

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
53
sequence length
164
structure length
164
Chain Sequence
TGLAADIRWTAYGVPHIRAKDERGLGYGIGYAYARDNACLLAEEIVTARGERARYFGSEGKSSAELDNLPSDIFYAWLNQPEALQAFWQAQTPAVRQLLEGYAAGFNRFLREADGKTTSCLGQPWLRAIATDDLLRLTRRLLVEGGVGQFADALVAAAPPGAEK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH3 (96-107)EMPTYS1 (34-38)AH4 (109-118)TII1 (38-41)S2 (42-46)AH5 (121-140)AH1 (50-77)AH2 (80-84)O1 (67-148)TI1 (85-88)TI2 (90-93)TI3 (143-146)TI5 (151-154)TII2 (148-151)TVIII1 (152-155)AH6 (159-171)TI4 (146-149)Updating...
connected with : NaN
molecule tags Hydrolase/hydrolase inhibitor
source organism Pseudomonas aeruginosa
publication title n-Alkylboronic Acid Inhibitors Reveal Determinants of Ligand Specificity in the Quorum-Quenching and Siderophore Biosynthetic Enzyme PvdQ.
pubmed doi rcsb
molecule keywords Acyl-homoserine lactone acylase PvdQ
total genus 53
structure length 164
sequence length 164
ec nomenclature ec 3.5.1.97: Acyl-homoserine-lactone acylase.
pdb deposition date 2014-10-03
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.439.10 Mainly Alpha Orthogonal Bundle Penicillin Amidohydrolase; domain 1 Penicillin Amidohydrolase, domain 1 4wkuA00
1FM2A 3ML0A 4M1JA 1PNLA 4YF9A 4PEMA 2WYBA 3K3WA 3JTRA 4HSRA 3SRCA 1PNMA 1JVZA 1JX9A 4PELA 1AJPA 4K2GA 4YFBA 3S8RA 1FXHA 1GM9A 2AE3A 4HSTA 1FXVA 2WYDA 1JW0A 3L91A 1AJNA 1K5QA 1GK1A 3JTQA 2AE5A 3SRAA 4WKUA 1GM7A 1AI4A 1KEHA 4WKTA 1AI5A 2WYEA 1K5SA 3L94A 1GKFA 4WKVA 1AI7A 1PNKA 1GM8A 4E55A 4WKSA 4E56A 1CP9A 3SRBA 1GK0A 4K2FA 4E57A 1K7DA 1KECA 2AE4A 2WYCA 1AJQA 1GK9A 1H2GA 2ADVA 4YFAA 1E3AA 4BTHA 1OR0A 1AI6A 1GHDA
chains in the Genus database with same CATH superfamily
1FM2A 3ML0A 4M1JA 1PNLA 4YF9A 4PEMA 2WYBA 3K3WA 3JTRA 4HSRA 3SRCA 1PNMA 1JVZA 1JX9A 4PELA 1AJPA 4K2GA 4YFBA 3S8RA 1FXHA 1GM9A 2AE3A 4HSTA 1FXVA 2WYDA 1JW0A 3L91A 1AJNA 1K5QA 1GK1A 3JTQA 2AE5A 3SRAA 4WKUA 1GM7A 1AI4A 1KEHA 4WKTA 1AI5A 2WYEA 1K5SA 3L94A 1GKFA 4WKVA 1AI7A 1PNKA 1GM8A 4BWCA 4E55A 4WKSA 4E56A 1CP9A 3SRBA 1GK0A 4K2FA 4E57A 1K7DA 1KECA 2AE4A 2WYCA 1AJQA 1GK9A 1H2GA 2ADVA 3FGRA 1E3AA 4YFAA 4BTHA 1OR0A 1AI6A 1GHDA 3FGTA
chains in the Genus database with same CATH topology
1FM2A 3ML0A 4M1JA 1PNLA 4YF9A 4PEMA 2WYBA 3K3WA 3JTRA 4HSRA 3SRCA 1PNMA 1JVZA 1JX9A 4PELA 1AJPA 4K2GA 4YFBA 3S8RA 1FXHA 1GM9A 2AE3A 4HSTA 1FXVA 2WYDA 1JW0A 3L91A 1AJNA 1K5QA 1GK1A 3JTQA 2AE5A 3SRAA 4WKUA 1GM7A 1AI4A 1KEHA 4WKTA 1AI5A 2WYEA 1K5SA 3L94A 1GKFA 4WKVA 1AI7A 1PNKA 1GM8A 4E55A 4WKSA 4E56A 1CP9A 3SRBA 1GK0A 4K2FA 4E57A 1K7DA 1KECA 2AE4A 2WYCA 1AJQA 1GK9A 1H2GA 2ADVA 4YFAA 1E3AA 4BTHA 1OR0A 1AI6A 1GHDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1FM2 A;  3ML0 A;  4M1J A;  1PNL A;  4YF9 A;  4PEM A;  2WYB A;  3K3W A;  3JTR A;  4HSR A;  3SRC A;  1PNM A;  1JVZ A;  1JX9 A;  4PEL A;  1AJP A;  4K2G A;  4YFB A;  3S8R A;  1FXH A;  1GM9 A;  2AE3 A;  4HST A;  1FXV A;  2WYD A;  1JW0 A;  3L91 A;  1AJN A;  1K5Q A;  1GK1 A;  3JTQ A;  2AE5 A;  3SRA A;  4WKU A;  1GM7 A;  1AI4 A;  1KEH A;  4WKT A;  1AI5 A;  2WYE A;  1K5S A;  3L94 A;  1GKF A;  4WKV A;  1AI7 A;  1PNK A;  1GM8 A;  4E55 A;  4WKS A;  4E56 A;  1CP9 A;  3SRB A;  1GK0 A;  4K2F A;  4E57 A;  1K7D A;  1KEC A;  2AE4 A;  2WYC A;  1AJQ A;  1GK9 A;  1H2G A;  2ADV A;  4YFA A;  1E3A A;  4BTH A;  1OR0 A;  1AI6 A;  1GHD A; 
#chains in the Genus database with same CATH topology
 1FM2 A;  3ML0 A;  4M1J A;  1PNL A;  4YF9 A;  4PEM A;  2WYB A;  3K3W A;  3JTR A;  4HSR A;  3SRC A;  1PNM A;  1JVZ A;  1JX9 A;  4PEL A;  1AJP A;  4K2G A;  4YFB A;  3S8R A;  1FXH A;  1GM9 A;  2AE3 A;  4HST A;  1FXV A;  2WYD A;  1JW0 A;  3L91 A;  1AJN A;  1K5Q A;  1GK1 A;  3JTQ A;  2AE5 A;  3SRA A;  4WKU A;  1GM7 A;  1AI4 A;  1KEH A;  4WKT A;  1AI5 A;  2WYE A;  1K5S A;  3L94 A;  1GKF A;  4WKV A;  1AI7 A;  1PNK A;  1GM8 A;  4BWC A;  4E55 A;  4WKS A;  4E56 A;  1CP9 A;  3SRB A;  1GK0 A;  4K2F A;  4E57 A;  1K7D A;  1KEC A;  2AE4 A;  2WYC A;  1AJQ A;  1GK9 A;  1H2G A;  2ADV A;  3FGR A;  1E3A A;  4YFA A;  4BTH A;  1OR0 A;  1AI6 A;  1GHD A;  3FGT A; 
#chains in the Genus database with same CATH homology
 1FM2 A;  3ML0 A;  4M1J A;  1PNL A;  4YF9 A;  4PEM A;  2WYB A;  3K3W A;  3JTR A;  4HSR A;  3SRC A;  1PNM A;  1JVZ A;  1JX9 A;  4PEL A;  1AJP A;  4K2G A;  4YFB A;  3S8R A;  1FXH A;  1GM9 A;  2AE3 A;  4HST A;  1FXV A;  2WYD A;  1JW0 A;  3L91 A;  1AJN A;  1K5Q A;  1GK1 A;  3JTQ A;  2AE5 A;  3SRA A;  4WKU A;  1GM7 A;  1AI4 A;  1KEH A;  4WKT A;  1AI5 A;  2WYE A;  1K5S A;  3L94 A;  1GKF A;  4WKV A;  1AI7 A;  1PNK A;  1GM8 A;  4E55 A;  4WKS A;  4E56 A;  1CP9 A;  3SRB A;  1GK0 A;  4K2F A;  4E57 A;  1K7D A;  1KEC A;  2AE4 A;  2WYC A;  1AJQ A;  1GK9 A;  1H2G A;  2ADV A;  4YFA A;  1E3A A;  4BTH A;  1OR0 A;  1AI6 A;  1GHD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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