4YFBA

Structure of n-acylhomoserine lactone acylase macq in complex with phenylacetic acid
Total Genus 54

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
168
structure length
168
Chain Sequence
STYSAEIRRTTMGVPHIKAGNWGSAGYGFGYVQAQDNLCTMADSFLTYRGERSRHLGGSAQLVYNSTLGRPRNIDSDFFHRHVISDEAVDRTMAAQPAKLLQMVEGFAAGYNRYVREAKAGGSAHAACRSEAWVQPITARDVWRRIYAANLAGGYSNFAEAIANAQPP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI'1 (21-24)TII1 (20-23)S2 (25-29)AH5 (108-130)AH1 (32-59)AH2 (61-66)O1 (49-138)TI6 (161-164)AH3 (83-93)TI2 (76-79)TIV1 (133-136)TI3 (135-138)TI4 (138-141)TI5 (141-144)TIV2 (136-139)TVIII1 (142-145)AH6 (149-160)3H1 (165-168)AH4 (96-105)S1 (15-19)TI1 (67-70)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Acidovorax sp. mr-s7
publication title Bifunctional quorum-quenching and antibiotic-acylase MacQ forms a 170-kDa capsule-shaped molecule containing spacer polypeptides
pubmed doi rcsb
molecule keywords Protein related to penicillin acylase
total genus 54
structure length 168
sequence length 168
chains with identical sequence D, G, J
ec nomenclature
pdb deposition date 2015-02-25
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.439.10 Mainly Alpha Orthogonal Bundle Penicillin Amidohydrolase; domain 1 Penicillin Amidohydrolase, domain 1 4yfbA00
1AJQA 1PNKA 1KECA 4YFAA 1H2GA 1AI4A 1OR0A 1CP9A 1PNLA 3SRAA 2AE3A 4BTHA 4E57A 1JVZA 2ADVA 1GK1A 4YFBA 1AI7A 1JW0A 1K5QA 1PNMA 1K5SA 2WYEA 1GM7A 3JTRA 4PEMA 3ML0A 1AI5A 3L91A 1AJPA 1FM2A 3L94A 4M1JA 4E55A 1GHDA 1FXVA 4K2FA 4WKSA 1FXHA 2AE4A 4K2GA 3SRBA 2AE5A 4WKTA 4E56A 1AI6A 4HSRA 1GM9A 1JX9A 3K3WA 1GKFA 1K7DA 1GK9A 4YF9A 2WYCA 4HSTA 3JTQA 4WKUA 1KEHA 2WYDA 1AJNA 1GK0A 3S8RA 3SRCA 1GM8A 4WKVA 2WYBA 4PELA 1E3AA
chains in the Genus database with same CATH superfamily
1AJQA 1PNKA 1KECA 4YFAA 1H2GA 1AI4A 1OR0A 1CP9A 1PNLA 3SRAA 2AE3A 4BTHA 4E57A 1JVZA 2ADVA 1GK1A 4YFBA 1AI7A 1JW0A 1K5QA 1PNMA 1K5SA 2WYEA 1GM7A 3FGRA 3JTRA 3ML0A 4PEMA 1AI5A 3L91A 1AJPA 1FM2A 3L94A 4M1JA 4E55A 1GHDA 1FXVA 4K2FA 4WKSA 1FXHA 2AE4A 4K2GA 4BWCA 3SRBA 2AE5A 4WKTA 4E56A 1AI6A 4HSRA 1GM9A 1JX9A 3K3WA 1GKFA 1K7DA 1GK9A 4YF9A 2WYCA 4HSTA 3JTQA 3FGTA 4WKUA 1KEHA 2WYDA 1AJNA 1GK0A 3S8RA 3SRCA 1GM8A 4WKVA 2WYBA 4PELA 1E3AA
chains in the Genus database with same CATH topology
1AJQA 1PNKA 1KECA 4YFAA 1H2GA 1AI4A 1OR0A 1CP9A 1PNLA 3SRAA 2AE3A 4BTHA 4E57A 1JVZA 2ADVA 1GK1A 4YFBA 1AI7A 1JW0A 1K5QA 1PNMA 1K5SA 2WYEA 1GM7A 3JTRA 4PEMA 3ML0A 1AI5A 3L91A 1AJPA 1FM2A 3L94A 4M1JA 4E55A 1GHDA 1FXVA 4K2FA 4WKSA 1FXHA 2AE4A 4K2GA 3SRBA 2AE5A 4WKTA 4E56A 1AI6A 4HSRA 1GM9A 1JX9A 3K3WA 1GKFA 1K7DA 1GK9A 4YF9A 2WYCA 4HSTA 3JTQA 4WKUA 1KEHA 2WYDA 1AJNA 1GK0A 3S8RA 3SRCA 1GM8A 4WKVA 2WYBA 4PELA 1E3AA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1AJQ A;  1PNK A;  1KEC A;  4YFA A;  1H2G A;  1AI4 A;  1OR0 A;  1CP9 A;  1PNL A;  3SRA A;  2AE3 A;  4BTH A;  4E57 A;  1JVZ A;  2ADV A;  1GK1 A;  4YFB A;  1AI7 A;  1JW0 A;  1K5Q A;  1PNM A;  1K5S A;  2WYE A;  1GM7 A;  3JTR A;  4PEM A;  3ML0 A;  1AI5 A;  3L91 A;  1AJP A;  1FM2 A;  3L94 A;  4M1J A;  4E55 A;  1GHD A;  1FXV A;  4K2F A;  4WKS A;  1FXH A;  2AE4 A;  4K2G A;  3SRB A;  2AE5 A;  4WKT A;  4E56 A;  1AI6 A;  4HSR A;  1GM9 A;  1JX9 A;  3K3W A;  1GKF A;  1K7D A;  1GK9 A;  4YF9 A;  2WYC A;  4HST A;  3JTQ A;  4WKU A;  1KEH A;  2WYD A;  1AJN A;  1GK0 A;  3S8R A;  3SRC A;  1GM8 A;  4WKV A;  2WYB A;  4PEL A;  1E3A A; 
#chains in the Genus database with same CATH topology
 1AJQ A;  1PNK A;  1KEC A;  4YFA A;  1H2G A;  1AI4 A;  1OR0 A;  1CP9 A;  1PNL A;  3SRA A;  2AE3 A;  4BTH A;  4E57 A;  1JVZ A;  2ADV A;  1GK1 A;  4YFB A;  1AI7 A;  1JW0 A;  1K5Q A;  1PNM A;  1K5S A;  2WYE A;  1GM7 A;  3FGR A;  3JTR A;  3ML0 A;  4PEM A;  1AI5 A;  3L91 A;  1AJP A;  1FM2 A;  3L94 A;  4M1J A;  4E55 A;  1GHD A;  1FXV A;  4K2F A;  4WKS A;  1FXH A;  2AE4 A;  4K2G A;  4BWC A;  3SRB A;  2AE5 A;  4WKT A;  4E56 A;  1AI6 A;  4HSR A;  1GM9 A;  1JX9 A;  3K3W A;  1GKF A;  1K7D A;  1GK9 A;  4YF9 A;  2WYC A;  4HST A;  3JTQ A;  3FGT A;  4WKU A;  1KEH A;  2WYD A;  1AJN A;  1GK0 A;  3S8R A;  3SRC A;  1GM8 A;  4WKV A;  2WYB A;  4PEL A;  1E3A A; 
#chains in the Genus database with same CATH homology
 1AJQ A;  1PNK A;  1KEC A;  4YFA A;  1H2G A;  1AI4 A;  1OR0 A;  1CP9 A;  1PNL A;  3SRA A;  2AE3 A;  4BTH A;  4E57 A;  1JVZ A;  2ADV A;  1GK1 A;  4YFB A;  1AI7 A;  1JW0 A;  1K5Q A;  1PNM A;  1K5S A;  2WYE A;  1GM7 A;  3JTR A;  4PEM A;  3ML0 A;  1AI5 A;  3L91 A;  1AJP A;  1FM2 A;  3L94 A;  4M1J A;  4E55 A;  1GHD A;  1FXV A;  4K2F A;  4WKS A;  1FXH A;  2AE4 A;  4K2G A;  3SRB A;  2AE5 A;  4WKT A;  4E56 A;  1AI6 A;  4HSR A;  1GM9 A;  1JX9 A;  3K3W A;  1GKF A;  1K7D A;  1GK9 A;  4YF9 A;  2WYC A;  4HST A;  3JTQ A;  4WKU A;  1KEH A;  2WYD A;  1AJN A;  1GK0 A;  3S8R A;  3SRC A;  1GM8 A;  4WKV A;  2WYB A;  4PEL A;  1E3A A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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