4E7CA

E. cloacae mura in complex with utp
Total Genus 133
50100150200250300350400020406080100120140
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
133
sequence length
419
structure length
418
Chain Sequence
MDKFRVQGPTRLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDIDTTMKLLTQLGTKVERGSVWIDASNVNNFSAPYDLVKTMRASIWALGPLVARFGQGQVSLPGGCAIGARPVDLHIFGLEKLGAEIKLEEGYVKASVNGRLKGAHIVMDKVSVGATVTIMSAATLAEGTTIIENAAREPEIVDTANFLVALGAKISGQGTDRITIEGVERLGGGVYRVLPDRIETGTFLVAAAISGGKIVCRNAQPDTLDAVLAKLREAGADIETGEDWISLDMHGKRPKAVTVRTAPHPAFPTDMQAQFTLLNLVAEGTGVITETIFENRFMHVPELIRMGAHAEIESNTVICHGVEKLSGAQVMATDLRASASLVLAGCIAEGTTVVDRIYHIDRGYERIEDKLRALGANIERVKGE
50100150200250300350400400300200100
020406080100120Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (2-8)TIV13 (389-392)EMPTYS2 (14-17)AH13 (402-409)S15 (248-252)3H1 (32-34)AH3 (97-104)S3 (38-42)TIV2 (66-70)S14 (224-227)TIV1 (41-44)S5 (69-73)TIV3 (74-77)S7 (106-110)3H2 (84-86)TI1 (87-90)TII1 (116-119)3H3 (91-96)AH5 (163-174)S9 (142-146)TII2 (139-142)TIV4 (111-114)TIV5 (113-116)AH4 (122-132)S8 (135-139)TIV6 (147-150)TII3 (182-185)TII4 (207-210)AH6 (189-201)S12 (204-206)S13 (212-216)TVIII2 (210-213)AH7 (232-244)AH9 (307-316)AH12 (392-398)TI2 (276-279)TIV7 (251-254)3H4 (256-258)AH8 (260-269)S16 (272-275)S17 (279-283)S18 (294-296)TVIa1 (298-301)3H5 (304-306)TIV8 (299-302)S19 (320-325)TIV10 (328-331)TII'1 (348-351)AH10 (333-340)S22 (364-365)S21 (351-355)TIV12 (340-343)S20 (344-348)S23 (385-389)AH11 (370-382)S24 (412-417)TIV14 (399-402)AH1 (22-31)S4 (63-65)S6 (81-82)TVIII1 (158-161)S11 (179-183)TI'1 (284-287)S10 (155-157)AH2 (48-60)Updating...
connected with : NaN
molecule tags Transferase
source organism Enterobacter cloacae subsp. cloacae
publication title Open-close transition of MurA
rcsb
molecule keywords UDP-N-acetylglucosamine 1-carboxyvinyltransferase
total genus 133
structure length 418
sequence length 419
chains with identical sequence B, C, D
ec nomenclature ec 2.5.1.7: UDP-N-acetylglucosamine 1-carboxyvinyltransferase.
pdb deposition date 2012-03-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00275 EPSP_synthase EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.65.10.10 Alpha Beta Alpha-beta prism UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain Enolpyruvate transferase domain 4e7cA02
3.65.10.10 Alpha Beta Alpha-beta prism UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain Enolpyruvate transferase domain 4e7cA01
4FQDA 1MI4A 2PQ9A 3SLHA 1Q3GA 2O0XA 1G6TA 3SPBA 3SWDA 3ZH4A 2AA9A 4E7CA 2BJBA 4EIIA 2O0EA 3FJZA 3ISSA 3VCYA 3R38A 1G6SA 1Q36A 4GFPA 2YVWA 5U4HA 3ROIA 1A2NA 1RF6A 4ZNDA 2O0BA 4E7FA 2O0ZA 3V5VA 3SWGA 1P88A 2O0DA 3FJXA 3TI2A 3NVSA 3FK0A 3LTHA 2GG4A 3SWQA 2GGAA 5BS5A 1X8RA 2GGDA 1X8TA 3SWEA 1NAWA 1RF5A 5BUFA 2QFTA 4N3PA 4E7EA 3UPKA 1YBGA 1RF4A 3SG1A 4E7GA 3RMTA 3SWIA 1RYWA 1EJCA 2QFQA 3ZH3A 3KR6A 3KQJA 3SWAA 3TR1A 2GG6A 4E7DA 2Z2CA 3V4TA 4E7BA 3FK1A 3KQAA 2AAYA 3SU9A 1UAEA 2PQBA 1DLGA 2PQCA 2QFSA 5BQ2A 2PQDA 2RL1A 1EYNA 4R7UA 2RL2A 1P89A 4EGRA 2O15A 1EJDA 2QFUA
chains in the Genus database with same CATH superfamily
4FQDA 1MI4A 2PQ9A 3SLHA 1Q3GA 2O0XA 1G6TA 3SPBA 3SWDA 3ZH4A 2AA9A 4E7CA 2BJBA 4EIIA 2O0EA 3TV1A 3FJZA 3ISSA 3VCYA 3R38A 1G6SA 1Q36A 4GFPA 2YVWA 5U4HA 3ROIA 1A2NA 1RF6A 4ZNDA 2O0BA 4E7FA 2O0ZA 4O8JA 3V5VA 3SWGA 1P88A 2O0DA 3FJXA 3TI2A 3NVSA 3FK0A 3LTHA 2GG4A 3SWQA 2GGAA 5BS5A 1X8RA 3TUXA 2GGDA 3TUTA 1X8TA 3SWEA 3KGDA 1NAWA 1RF5A 5BUFA 2QFTA 4N3PA 4E7EA 3UPKA 1YBGA 3TW3A 1RF4A 3SG1A 4E7GA 3RMTA 3SWIA 1RYWA 1EJCA 1QMHA 2QFQA 3ZH3A 3KR6A 4O89A 4CLQA 3KQJA 3SWAA 3TR1A 2GG6A 4E7DA 2Z2CA 3V4TA 4E7BA 3FK1A 3KQAA 2AAYA 3SU9A 1UAEA 2PQBA 1DLGA 2PQCA 2QFSA 5BQ2A 2PQDA 2RL1A 1EYNA 4R7UA 2RL2A 1P89A 4EGRA 2O15A 1EJDA 1QMIA 3PQVA 2QFUA
chains in the Genus database with same CATH topology
4FQDA 1MI4A 2PQ9A 3SLHA 1Q3GA 2O0XA 1G6TA 3SPBA 3SWDA 3ZH4A 2AA9A 4E7CA 2BJBA 4EIIA 2O0EA 3FJZA 3ISSA 3VCYA 3R38A 1G6SA 1Q36A 4GFPA 2YVWA 5U4HA 3ROIA 1A2NA 1RF6A 4ZNDA 2O0BA 4E7FA 2O0ZA 3V5VA 3SWGA 1P88A 2O0DA 3FJXA 3TI2A 3NVSA 3FK0A 3LTHA 2GG4A 3SWQA 2GGAA 5BS5A 1X8RA 2GGDA 1X8TA 3SWEA 1NAWA 1RF5A 5BUFA 2QFTA 4N3PA 4E7EA 3UPKA 1YBGA 1RF4A 3SG1A 4E7GA 3RMTA 3SWIA 1RYWA 1EJCA 2QFQA 3ZH3A 3KR6A 3KQJA 3SWAA 3TR1A 2GG6A 4E7DA 2Z2CA 3V4TA 4E7BA 3FK1A 3KQAA 2AAYA 3SU9A 1UAEA 2PQBA 1DLGA 2PQCA 2QFSA 5BQ2A 2PQDA 2RL1A 1EYNA 4R7UA 2RL2A 1P89A 4EGRA 2O15A 1EJDA 2QFUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4FQD A;  1MI4 A;  2PQ9 A;  3SLH A;  1Q3G A;  2O0X A;  1G6T A;  3SPB A;  3SWD A;  3ZH4 A;  2AA9 A;  4E7C A;  2BJB A;  4EII A;  2O0E A;  3FJZ A;  3ISS A;  3VCY A;  3R38 A;  1G6S A;  1Q36 A;  4GFP A;  2YVW A;  5U4H A;  3ROI A;  1A2N A;  1RF6 A;  4ZND A;  2O0B A;  4E7F A;  2O0Z A;  3V5V A;  3SWG A;  1P88 A;  2O0D A;  3FJX A;  3TI2 A;  3NVS A;  3FK0 A;  3LTH A;  2GG4 A;  3SWQ A;  2GGA A;  5BS5 A;  1X8R A;  2GGD A;  1X8T A;  3SWE A;  1NAW A;  1RF5 A;  5BUF A;  2QFT A;  4N3P A;  4E7E A;  3UPK A;  1YBG A;  1RF4 A;  3SG1 A;  4E7G A;  3RMT A;  3SWI A;  1RYW A;  1EJC A;  2QFQ A;  3ZH3 A;  3KR6 A;  3KQJ A;  3SWA A;  3TR1 A;  2GG6 A;  4E7D A;  2Z2C A;  3V4T A;  4E7B A;  3FK1 A;  3KQA A;  2AAY A;  3SU9 A;  1UAE A;  2PQB A;  1DLG A;  2PQC A;  2QFS A;  5BQ2 A;  2PQD A;  2RL1 A;  1EYN A;  4R7U A;  2RL2 A;  1P89 A;  4EGR A;  2O15 A;  1EJD A;  2QFU A; 
#chains in the Genus database with same CATH topology
 4FQD A;  1MI4 A;  2PQ9 A;  3SLH A;  1Q3G A;  2O0X A;  1G6T A;  3SPB A;  3SWD A;  3ZH4 A;  2AA9 A;  4E7C A;  2BJB A;  4EII A;  2O0E A;  3TV1 A;  3FJZ A;  3ISS A;  3VCY A;  3R38 A;  1G6S A;  1Q36 A;  4GFP A;  2YVW A;  5U4H A;  3ROI A;  1A2N A;  1RF6 A;  4ZND A;  2O0B A;  4E7F A;  2O0Z A;  4O8J A;  3V5V A;  3SWG A;  1P88 A;  2O0D A;  3FJX A;  3TI2 A;  3NVS A;  3FK0 A;  3LTH A;  2GG4 A;  3SWQ A;  2GGA A;  5BS5 A;  1X8R A;  3TUX A;  2GGD A;  3TUT A;  1X8T A;  3SWE A;  3KGD A;  1NAW A;  1RF5 A;  5BUF A;  2QFT A;  4N3P A;  4E7E A;  3UPK A;  1YBG A;  3TW3 A;  1RF4 A;  3SG1 A;  4E7G A;  3RMT A;  3SWI A;  1RYW A;  1EJC A;  1QMH A;  2QFQ A;  3ZH3 A;  3KR6 A;  4O89 A;  4CLQ A;  3KQJ A;  3SWA A;  3TR1 A;  2GG6 A;  4E7D A;  2Z2C A;  3V4T A;  4E7B A;  3FK1 A;  3KQA A;  2AAY A;  3SU9 A;  1UAE A;  2PQB A;  1DLG A;  2PQC A;  2QFS A;  5BQ2 A;  2PQD A;  2RL1 A;  1EYN A;  4R7U A;  2RL2 A;  1P89 A;  4EGR A;  2O15 A;  1EJD A;  1QMI A;  3PQV A;  2QFU A; 
#chains in the Genus database with same CATH homology
 4FQD A;  1MI4 A;  2PQ9 A;  3SLH A;  1Q3G A;  2O0X A;  1G6T A;  3SPB A;  3SWD A;  3ZH4 A;  2AA9 A;  4E7C A;  2BJB A;  4EII A;  2O0E A;  3FJZ A;  3ISS A;  3VCY A;  3R38 A;  1G6S A;  1Q36 A;  4GFP A;  2YVW A;  5U4H A;  3ROI A;  1A2N A;  1RF6 A;  4ZND A;  2O0B A;  4E7F A;  2O0Z A;  3V5V A;  3SWG A;  1P88 A;  2O0D A;  3FJX A;  3TI2 A;  3NVS A;  3FK0 A;  3LTH A;  2GG4 A;  3SWQ A;  2GGA A;  5BS5 A;  1X8R A;  2GGD A;  1X8T A;  3SWE A;  1NAW A;  1RF5 A;  5BUF A;  2QFT A;  4N3P A;  4E7E A;  3UPK A;  1YBG A;  1RF4 A;  3SG1 A;  4E7G A;  3RMT A;  3SWI A;  1RYW A;  1EJC A;  2QFQ A;  3ZH3 A;  3KR6 A;  3KQJ A;  3SWA A;  3TR1 A;  2GG6 A;  4E7D A;  2Z2C A;  3V4T A;  4E7B A;  3FK1 A;  3KQA A;  2AAY A;  3SU9 A;  1UAE A;  2PQB A;  1DLG A;  2PQC A;  2QFS A;  5BQ2 A;  2PQD A;  2RL1 A;  1EYN A;  4R7U A;  2RL2 A;  1P89 A;  4EGR A;  2O15 A;  1EJD A;  2QFU A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.