4E7D | Genus

Total Genus 128

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	128
sequence length	419
structure length	418
Chain Sequence	MDKFRVQGPTRLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDIDTTMKLLTQLGTKVERGSVWIDASNVNNFSAPYDLVKTMRASIWALGPLVARFGQGQVSLPGGCAIGARPVDLHIFGLEKLGAEIKLEEGYVKASVNGRLKGAHIVMDKVSVGATVTIMSAATLAEGTTIIENAAREPEIVDTANFLVALGAKISGQGTDRITIEGVERLGGGVYRVLPDRIETGTFLVAAAISGGKIVCRNAQPDTLDAVLAKLREAGADIETGEDWISLDMHGKRPKAVTVRTAPHPAFPTDMQAQFTLLNLVAEGTGVITETIFENRFMHVPELIRMGAHAEIESNTVICHGVEKLSGAQVMATDLRASASLVLAGCIAEGTTVVDRIYHIDRGYERIEDKLRALGANIERVKGE

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transferase
source organism	Enterobacter cloacae subsp. cloacae
publication title	Open-close transition of MurA rcsb
molecule keywords	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
total genus	128
structure length	418
sequence length	419
chains with identical sequence	B, C, D
ec nomenclature	ec 2.5.1.7: UDP-N-acetylglucosamine 1-carboxyvinyltransferase.
pdb deposition date	2012-03-16

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00275	EPSP_synthase	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.65.10.10	Alpha Beta	Alpha-beta prism	UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain	Enolpyruvate transferase domain	4e7dA02
3.65.10.10	Alpha Beta	Alpha-beta prism	UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain	Enolpyruvate transferase domain	4e7dA01

3SU9A 1DLGA 2O0ZA 2GG4A 2PQDA 1Q36A 2AAYA 1YBGA 3ZH4A 2QFQA 3VCYA 2O15A 1EJDA 1G6TA 4N3PA 1X8TA 2RL1A 3V4TA 2Z2CA 4ZNDA 4GFPA 3RMTA 3SLHA 5BS5A 1RF4A 2O0DA 3UPKA 2O0BA 2QFUA 1NAWA 4E7GA 4E7DA 1RF5A 3SWEA 2QFSA 3R38A 1EJCA 4E7EA 4FQDA 2PQCA 4E7FA 3SWAA 3V5VA 1UAEA 3TI2A 3FK1A 3SPBA 3KQJA 2YVWA 4E7BA 4E7CA 3TR1A 5BQ2A 1P89A 2GG6A 3SWDA 2O0EA 2O0XA 5U4HA 3SWQA 3FJXA 3FJZA 3ISSA 3ROIA 3SWIA 4EGRA 1X8RA 2QFTA 2RL2A 2PQ9A 3KQAA 3LTHA 1RYWA 2PQBA 1Q3GA 1G6SA 2AA9A 1EYNA 1P88A 2GGDA 2BJBA 1MI4A 5BUFA 4EIIA 3KR6A 3SG1A 1A2NA 3ZH3A 3FK0A 2GGAA 3SWGA 3NVSA 4R7UA 1RF6A
chains in the Genus database with same CATH superfamily

3SU9A 1DLGA 2O0ZA 2GG4A 2PQDA 4CLQA 1Q36A 2AAYA 1YBGA 3ZH4A 2QFQA 3VCYA 2O15A 4O8JA 1EJDA 1QMIA 3TW3A 1G6TA 4N3PA 3TUXA 1X8TA 2RL1A 3V4TA 2Z2CA 4ZNDA 4GFPA 3RMTA 3SLHA 5BS5A 1RF4A 2O0DA 3UPKA 2O0BA 2QFUA 1NAWA 4E7GA 4E7DA 1RF5A 3SWEA 2QFSA 4O89A 3R38A 3TUTA 1EJCA 4E7EA 4FQDA 2PQCA 4E7FA 3SWAA 3V5VA 1UAEA 3TI2A 3FK1A 3SPBA 3KQJA 2YVWA 4E7BA 4E7CA 3TR1A 5BQ2A 1P89A 2GG6A 3SWDA 3PQVA 2O0EA 2O0XA 5U4HA 3SWQA 3FJXA 3FJZA 3ISSA 3ROIA 3SWIA 4EGRA 1X8RA 2QFTA 2RL2A 2PQ9A 3KQAA 3LTHA 1RYWA 2PQBA 1Q3GA 1G6SA 2AA9A 1EYNA 1P88A 2GGDA 2BJBA 1MI4A 5BUFA 4EIIA 3KR6A 3SG1A 1A2NA 3ZH3A 3TV1A 3FK0A 1QMHA 2GGAA 3SWGA 3KGDA 3NVSA 4R7UA 1RF6A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3SU9 A;  1DLG A;  2O0Z A;  2GG4 A;  2PQD A;  1Q36 A;  2AAY A;  1YBG A;  3ZH4 A;  2QFQ A;  3VCY A;  2O15 A;  1EJD A;  1G6T A;  4N3P A;  1X8T A;  2RL1 A;  3V4T A;  2Z2C A;  4ZND A;  4GFP A;  3RMT A;  3SLH A;  5BS5 A;  1RF4 A;  2O0D A;  3UPK A;  2O0B A;  2QFU A;  1NAW A;  4E7G A;  4E7D A;  1RF5 A;  3SWE A;  2QFS A;  3R38 A;  1EJC A;  4E7E A;  4FQD A;  2PQC A;  4E7F A;  3SWA A;  3V5V A;  1UAE A;  3TI2 A;  3FK1 A;  3SPB A;  3KQJ A;  2YVW A;  4E7B A;  4E7C A;  3TR1 A;  5BQ2 A;  1P89 A;  2GG6 A;  3SWD A;  2O0E A;  2O0X A;  5U4H A;  3SWQ A;  3FJX A;  3FJZ A;  3ISS A;  3ROI A;  3SWI A;  4EGR A;  1X8R A;  2QFT A;  2RL2 A;  2PQ9 A;  3KQA A;  3LTH A;  1RYW A;  2PQB A;  1Q3G A;  1G6S A;  2AA9 A;  1EYN A;  1P88 A;  2GGD A;  2BJB A;  1MI4 A;  5BUF A;  4EII A;  3KR6 A;  3SG1 A;  1A2N A;  3ZH3 A;  3FK0 A;  2GGA A;  3SWG A;  3NVS A;  4R7U A;  1RF6 A; 
#chains in the Genus database with same CATH topology
 3SU9 A;  1DLG A;  2O0Z A;  2GG4 A;  2PQD A;  4CLQ A;  1Q36 A;  2AAY A;  1YBG A;  3ZH4 A;  2QFQ A;  3VCY A;  2O15 A;  4O8J A;  1EJD A;  1QMI A;  3TW3 A;  1G6T A;  4N3P A;  3TUX A;  1X8T A;  2RL1 A;  3V4T A;  2Z2C A;  4ZND A;  4GFP A;  3RMT A;  3SLH A;  5BS5 A;  1RF4 A;  2O0D A;  3UPK A;  2O0B A;  2QFU A;  1NAW A;  4E7G A;  4E7D A;  1RF5 A;  3SWE A;  2QFS A;  4O89 A;  3R38 A;  3TUT A;  1EJC A;  4E7E A;  4FQD A;  2PQC A;  4E7F A;  3SWA A;  3V5V A;  1UAE A;  3TI2 A;  3FK1 A;  3SPB A;  3KQJ A;  2YVW A;  4E7B A;  4E7C A;  3TR1 A;  5BQ2 A;  1P89 A;  2GG6 A;  3SWD A;  3PQV A;  2O0E A;  2O0X A;  5U4H A;  3SWQ A;  3FJX A;  3FJZ A;  3ISS A;  3ROI A;  3SWI A;  4EGR A;  1X8R A;  2QFT A;  2RL2 A;  2PQ9 A;  3KQA A;  3LTH A;  1RYW A;  2PQB A;  1Q3G A;  1G6S A;  2AA9 A;  1EYN A;  1P88 A;  2GGD A;  2BJB A;  1MI4 A;  5BUF A;  4EII A;  3KR6 A;  3SG1 A;  1A2N A;  3ZH3 A;  3TV1 A;  3FK0 A;  1QMH A;  2GGA A;  3SWG A;  3KGD A;  3NVS A;  4R7U A;  1RF6 A; 
#chains in the Genus database with same CATH homology
 3SU9 A;  1DLG A;  2O0Z A;  2GG4 A;  2PQD A;  1Q36 A;  2AAY A;  1YBG A;  3ZH4 A;  2QFQ A;  3VCY A;  2O15 A;  1EJD A;  1G6T A;  4N3P A;  1X8T A;  2RL1 A;  3V4T A;  2Z2C A;  4ZND A;  4GFP A;  3RMT A;  3SLH A;  5BS5 A;  1RF4 A;  2O0D A;  3UPK A;  2O0B A;  2QFU A;  1NAW A;  4E7G A;  4E7D A;  1RF5 A;  3SWE A;  2QFS A;  3R38 A;  1EJC A;  4E7E A;  4FQD A;  2PQC A;  4E7F A;  3SWA A;  3V5V A;  1UAE A;  3TI2 A;  3FK1 A;  3SPB A;  3KQJ A;  2YVW A;  4E7B A;  4E7C A;  3TR1 A;  5BQ2 A;  1P89 A;  2GG6 A;  3SWD A;  2O0E A;  2O0X A;  5U4H A;  3SWQ A;  3FJX A;  3FJZ A;  3ISS A;  3ROI A;  3SWI A;  4EGR A;  1X8R A;  2QFT A;  2RL2 A;  2PQ9 A;  3KQA A;  3LTH A;  1RYW A;  2PQB A;  1Q3G A;  1G6S A;  2AA9 A;  1EYN A;  1P88 A;  2GGD A;  2BJB A;  1MI4 A;  5BUF A;  4EII A;  3KR6 A;  3SG1 A;  1A2N A;  3ZH3 A;  3FK0 A;  2GGA A;  3SWG A;  3NVS A;  4R7U A;  1RF6 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4E7DA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations