4E7EA

E. cloacae c115d mura in complex with udp-glucose
Total Genus 130
50100150200250300350400020406080100120
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
130
sequence length
419
structure length
418
Chain Sequence
MDKFRVQGPTRLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDIDTTMKLLTQLGTKVERGSVWIDASNVNNFSAPYDLVKTMRASIWALGPLVARFGQGQVSLPGGDAIGARPVDLHIFGLEKLGAEIKLEEGYVKASVNGRLKGAHIVMDKVSVGATVTIMSAATLAEGTTIIENAAREPEIVDTANFLVALGAKISGQGTDRITIEGVERLGGGVYRVLPDRIETGTFLVAAAISGGKIVCRNAQPDTLDAVLAKLREAGADIETGEDWISLDMHGKRPKAVTVRTAPHPAFPTDMQAQFTLLNLVAEGTGVITETIFENRFMHVPELIRMGAHAEIESNTVICHGVEKLSGAQVMATDLRASASLVLAGCIAEGTTVVDRIYHIDRGYERIEDKLRALGANIERVKGE
50100150200250300350400400300200100
020406080100120Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS24 (412-416)S2 (14-17)AH13 (402-408)S15 (248-252)AH1 (22-31)AH2 (48-60)AH12 (392-397)3H1 (32-34)AH3 (97-104)S3 (39-42)S5 (70-73)S14 (224-227)TIV1 (41-44)TIV2 (66-70)TI1 (74-77)S7 (106-110)S6 (81-82)TI2 (83-86)TIV3 (84-87)TIV5 (87-90)TIV8 (116-119)3H2 (91-96)AH5 (163-174)S9 (142-146)TIV9 (139-142)AH4 (123-132)S8 (135-138)TIV10 (147-150)TII1 (182-185)S11 (179-183)TII2 (207-210)AH6 (189-201)S12 (204-206)S13 (212-216)TVIII2 (210-213)AH7 (232-244)AH9 (307-316)TI3 (276-279)TIV11 (251-254)3H3 (256-258)AH8 (260-269)TI'1 (284-287)S16 (272-276)S17 (279-283)S18 (294-296)TVIa1 (298-301)3H4 (304-306)TIV12 (299-302)S21 (351-355)S19 (320-325)TII'1 (348-351)AH10 (334-340)TIV14 (328-331)TIV15 (330-333)S22 (364-365)S23 (385-390)O1 (417-419)S1 (3-8)TIV17 (399-402)S4 (63-65)TVIII1 (158-161)S20 (344-348)TIV16 (389-392)S10 (155-157)AH11 (370-382)Updating...
connected with : NaN
molecule tags Transferase
source organism Enterobacter cloacae subsp. cloacae
publication title Open-close transition of MurA
rcsb
molecule keywords UDP-N-acetylglucosamine 1-carboxyvinyltransferase
total genus 130
structure length 418
sequence length 419
chains with identical sequence B, C, D
ec nomenclature ec 2.5.1.7: UDP-N-acetylglucosamine 1-carboxyvinyltransferase.
pdb deposition date 2012-03-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00275 EPSP_synthase EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.65.10.10 Alpha Beta Alpha-beta prism UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain Enolpyruvate transferase domain 4e7eA02
3.65.10.10 Alpha Beta Alpha-beta prism UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain Enolpyruvate transferase domain 4e7eA01
3V5VA 3SWGA 2O0DA 4R7UA 3TI2A 1UAEA 2YVWA 2O0EA 4E7FA 1RYWA 3ZH4A 2QFUA 5BS5A 1DLGA 2Z2CA 2PQ9A 1MI4A 1Q36A 1G6SA 3SLHA 1YBGA 3SWQA 2PQBA 1X8TA 4E7GA 1G6TA 4GFPA 3ROIA 3NVSA 2GGDA 5U4HA 2RL2A 2QFSA 1RF6A 2O0XA 1EJCA 4E7EA 3ISSA 3KQJA 4EIIA 1A2NA 1EYNA 4ZNDA 1P88A 3UPKA 2AAYA 3VCYA 3SWAA 2QFTA 2GG6A 2QFQA 3SPBA 1EJDA 3FJZA 3KQAA 2O0BA 3FJXA 3SWIA 1Q3GA 2O0ZA 4E7BA 2GG4A 5BUFA 3FK0A 1NAWA 2BJBA 3ZH3A 2GGAA 3R38A 2PQCA 5BQ2A 3LTHA 4E7DA 1X8RA 3SU9A 3RMTA 3SWDA 1RF4A 3TR1A 3KR6A 1RF5A 4N3PA 2AA9A 4FQDA 3V4TA 2PQDA 3FK1A 4EGRA 1P89A 2RL1A 2O15A 3SG1A 4E7CA 3SWEA
chains in the Genus database with same CATH superfamily
3V5VA 3SWGA 2O0DA 4R7UA 3PQVA 3TI2A 1UAEA 2YVWA 2O0EA 4E7FA 1RYWA 3ZH4A 2QFUA 5BS5A 1DLGA 2Z2CA 2PQ9A 1MI4A 1Q36A 1G6SA 3SLHA 1YBGA 3SWQA 2PQBA 1X8TA 4E7GA 1G6TA 4GFPA 3ROIA 3NVSA 2GGDA 5U4HA 2RL2A 3KGDA 2QFSA 1RF6A 2O0XA 1EJCA 4E7EA 3ISSA 3KQJA 4EIIA 1A2NA 3TV1A 1EYNA 4CLQA 4ZNDA 4O89A 1P88A 3UPKA 2AAYA 3VCYA 3SWAA 2QFTA 2GG6A 2QFQA 3SPBA 3TUXA 1QMIA 1EJDA 3FJZA 3KQAA 2O0BA 3FJXA 4O8JA 3SWIA 3TW3A 1Q3GA 2O0ZA 4E7BA 2GG4A 5BUFA 3FK0A 1NAWA 2BJBA 3ZH3A 2GGAA 3R38A 1QMHA 3TUTA 2PQCA 5BQ2A 3LTHA 4E7DA 1X8RA 3SU9A 3RMTA 3SWDA 1RF4A 3TR1A 3KR6A 1RF5A 4N3PA 2AA9A 4FQDA 3V4TA 2PQDA 3FK1A 4EGRA 1P89A 2RL1A 2O15A 3SG1A 4E7CA 3SWEA
chains in the Genus database with same CATH topology
3V5VA 3SWGA 2O0DA 4R7UA 3TI2A 1UAEA 2YVWA 2O0EA 4E7FA 1RYWA 3ZH4A 2QFUA 5BS5A 1DLGA 2Z2CA 2PQ9A 1MI4A 1Q36A 1G6SA 3SLHA 1YBGA 3SWQA 2PQBA 1X8TA 4E7GA 1G6TA 4GFPA 3ROIA 3NVSA 2GGDA 5U4HA 2RL2A 2QFSA 1RF6A 2O0XA 1EJCA 4E7EA 3ISSA 3KQJA 4EIIA 1A2NA 1EYNA 4ZNDA 1P88A 3UPKA 2AAYA 3VCYA 3SWAA 2QFTA 2GG6A 2QFQA 3SPBA 1EJDA 3FJZA 3KQAA 2O0BA 3FJXA 3SWIA 1Q3GA 2O0ZA 4E7BA 2GG4A 5BUFA 3FK0A 1NAWA 2BJBA 3ZH3A 2GGAA 3R38A 2PQCA 5BQ2A 3LTHA 4E7DA 1X8RA 3SU9A 3RMTA 3SWDA 1RF4A 3TR1A 3KR6A 1RF5A 4N3PA 2AA9A 4FQDA 3V4TA 2PQDA 3FK1A 4EGRA 1P89A 2RL1A 2O15A 3SG1A 4E7CA 3SWEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3V5V A;  3SWG A;  2O0D A;  4R7U A;  3TI2 A;  1UAE A;  2YVW A;  2O0E A;  4E7F A;  1RYW A;  3ZH4 A;  2QFU A;  5BS5 A;  1DLG A;  2Z2C A;  2PQ9 A;  1MI4 A;  1Q36 A;  1G6S A;  3SLH A;  1YBG A;  3SWQ A;  2PQB A;  1X8T A;  4E7G A;  1G6T A;  4GFP A;  3ROI A;  3NVS A;  2GGD A;  5U4H A;  2RL2 A;  2QFS A;  1RF6 A;  2O0X A;  1EJC A;  4E7E A;  3ISS A;  3KQJ A;  4EII A;  1A2N A;  1EYN A;  4ZND A;  1P88 A;  3UPK A;  2AAY A;  3VCY A;  3SWA A;  2QFT A;  2GG6 A;  2QFQ A;  3SPB A;  1EJD A;  3FJZ A;  3KQA A;  2O0B A;  3FJX A;  3SWI A;  1Q3G A;  2O0Z A;  4E7B A;  2GG4 A;  5BUF A;  3FK0 A;  1NAW A;  2BJB A;  3ZH3 A;  2GGA A;  3R38 A;  2PQC A;  5BQ2 A;  3LTH A;  4E7D A;  1X8R A;  3SU9 A;  3RMT A;  3SWD A;  1RF4 A;  3TR1 A;  3KR6 A;  1RF5 A;  4N3P A;  2AA9 A;  4FQD A;  3V4T A;  2PQD A;  3FK1 A;  4EGR A;  1P89 A;  2RL1 A;  2O15 A;  3SG1 A;  4E7C A;  3SWE A; 
#chains in the Genus database with same CATH topology
 3V5V A;  3SWG A;  2O0D A;  4R7U A;  3PQV A;  3TI2 A;  1UAE A;  2YVW A;  2O0E A;  4E7F A;  1RYW A;  3ZH4 A;  2QFU A;  5BS5 A;  1DLG A;  2Z2C A;  2PQ9 A;  1MI4 A;  1Q36 A;  1G6S A;  3SLH A;  1YBG A;  3SWQ A;  2PQB A;  1X8T A;  4E7G A;  1G6T A;  4GFP A;  3ROI A;  3NVS A;  2GGD A;  5U4H A;  2RL2 A;  3KGD A;  2QFS A;  1RF6 A;  2O0X A;  1EJC A;  4E7E A;  3ISS A;  3KQJ A;  4EII A;  1A2N A;  3TV1 A;  1EYN A;  4CLQ A;  4ZND A;  4O89 A;  1P88 A;  3UPK A;  2AAY A;  3VCY A;  3SWA A;  2QFT A;  2GG6 A;  2QFQ A;  3SPB A;  3TUX A;  1QMI A;  1EJD A;  3FJZ A;  3KQA A;  2O0B A;  3FJX A;  4O8J A;  3SWI A;  3TW3 A;  1Q3G A;  2O0Z A;  4E7B A;  2GG4 A;  5BUF A;  3FK0 A;  1NAW A;  2BJB A;  3ZH3 A;  2GGA A;  3R38 A;  1QMH A;  3TUT A;  2PQC A;  5BQ2 A;  3LTH A;  4E7D A;  1X8R A;  3SU9 A;  3RMT A;  3SWD A;  1RF4 A;  3TR1 A;  3KR6 A;  1RF5 A;  4N3P A;  2AA9 A;  4FQD A;  3V4T A;  2PQD A;  3FK1 A;  4EGR A;  1P89 A;  2RL1 A;  2O15 A;  3SG1 A;  4E7C A;  3SWE A; 
#chains in the Genus database with same CATH homology
 3V5V A;  3SWG A;  2O0D A;  4R7U A;  3TI2 A;  1UAE A;  2YVW A;  2O0E A;  4E7F A;  1RYW A;  3ZH4 A;  2QFU A;  5BS5 A;  1DLG A;  2Z2C A;  2PQ9 A;  1MI4 A;  1Q36 A;  1G6S A;  3SLH A;  1YBG A;  3SWQ A;  2PQB A;  1X8T A;  4E7G A;  1G6T A;  4GFP A;  3ROI A;  3NVS A;  2GGD A;  5U4H A;  2RL2 A;  2QFS A;  1RF6 A;  2O0X A;  1EJC A;  4E7E A;  3ISS A;  3KQJ A;  4EII A;  1A2N A;  1EYN A;  4ZND A;  1P88 A;  3UPK A;  2AAY A;  3VCY A;  3SWA A;  2QFT A;  2GG6 A;  2QFQ A;  3SPB A;  1EJD A;  3FJZ A;  3KQA A;  2O0B A;  3FJX A;  3SWI A;  1Q3G A;  2O0Z A;  4E7B A;  2GG4 A;  5BUF A;  3FK0 A;  1NAW A;  2BJB A;  3ZH3 A;  2GGA A;  3R38 A;  2PQC A;  5BQ2 A;  3LTH A;  4E7D A;  1X8R A;  3SU9 A;  3RMT A;  3SWD A;  1RF4 A;  3TR1 A;  3KR6 A;  1RF5 A;  4N3P A;  2AA9 A;  4FQD A;  3V4T A;  2PQD A;  3FK1 A;  4EGR A;  1P89 A;  2RL1 A;  2O15 A;  3SG1 A;  4E7C A;  3SWE A; 
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