4E7FA

E. cloacae c115d mura in complex with udp
Total Genus 135
50100150200250300350400020406080100120140
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
135
sequence length
419
structure length
418
Chain Sequence
MDKFRVQGPTRLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDIDTTMKLLTQLGTKVERGSVWIDASNVNNFSAPYDLVKTMRASIWALGPLVARFGQGQVSLPGGDAIGARPVDLHIFGLEKLGAEIKLEEGYVKASVNGRLKGAHIVMDKVSVGATVTIMSAATLAEGTTIIENAAREPEIVDTANFLVALGAKISGQGTDRITIEGVERLGGGVYRVLPDRIETGTFLVAAAISGGKIVCRNAQPDTLDAVLAKLREAGADIETGEDWISLDMHGKRPKAVTVRTAPHPAFPTDMQAQFTLLNLVAEGTGVITETIFENRFMHVPELIRMGAHAEIESNTVICHGVEKLSGAQVMATDLRASASLVLAGCIAEGTTVVDRIYHIDRGYERIEDKLRALGANIERVKGE
50100150200250300350400400300200100
020406080100120Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV11 (389-392)S24 (412-416)S2 (14-17)AH13 (402-409)S15 (248-252)3H1 (32-34)AH3 (97-104)S3 (39-42)TIV2 (66-70)S14 (224-227)TIV1 (41-44)AH2 (48-60)TIV3 (74-77)S5 (69-73)S7 (106-110)3H2 (84-86)TI1 (87-90)TII1 (116-119)3H3 (91-96)AH5 (163-174)S9 (142-146)TII2 (139-142)TI2 (113-116)TVIII1 (158-161)AH4 (123-132)S8 (135-139)TIV4 (147-150)TII3 (182-185)S11 (179-183)TII4 (207-210)AH6 (189-201)S12 (204-206)S13 (212-216)TVIII2 (210-213)AH7 (232-244)AH12 (392-398)S17 (280-283)TIV6 (276-279)TIV5 (251-254)3H4 (256-258)AH8 (260-269)S16 (272-275)S18 (294-296)TVIa1 (298-301)3H5 (304-306)TIV7 (299-302)S19 (320-325)TIV9 (328-331)TII'1 (348-351)AH10 (334-341)TIV10 (330-333)S22 (364-366)S20 (344-348)S21 (351-355)S23 (385-390)AH11 (370-382)S1 (3-8)TIV12 (399-402)AH1 (22-31)S4 (63-65)S6 (81-82)TI'1 (284-287)AH9 (307-316)S10 (155-157)Updating...
connected with : NaN
molecule tags Transferase
source organism Enterobacter cloacae subsp. cloacae
publication title Open-close transition of MurA
rcsb
molecule keywords UDP-N-acetylglucosamine 1-carboxyvinyltransferase
total genus 135
structure length 418
sequence length 419
chains with identical sequence B, C, D
ec nomenclature ec 2.5.1.7: UDP-N-acetylglucosamine 1-carboxyvinyltransferase.
pdb deposition date 2012-03-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00275 EPSP_synthase EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.65.10.10 Alpha Beta Alpha-beta prism UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain Enolpyruvate transferase domain 4e7fA02
3.65.10.10 Alpha Beta Alpha-beta prism UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain Enolpyruvate transferase domain 4e7fA01
2GG6A 5BUFA 2O0DA 1EJCA 3KR6A 2GG4A 3FJXA 1Q36A 2QFUA 1RF5A 1MI4A 3SWEA 1UAEA 3SG1A 3SU9A 1RF6A 4E7EA 3SWQA 4E7BA 3ZH4A 3TI2A 3UPKA 2AA9A 4EIIA 3RMTA 3ISSA 2O15A 3FJZA 2GGAA 1A2NA 1Q3GA 2O0BA 2O0EA 2QFSA 3VCYA 4R7UA 3R38A 1P88A 3ZH3A 5BS5A 1RF4A 1EJDA 4E7DA 2O0XA 3V4TA 3SWAA 3TR1A 1P89A 2AAYA 3SLHA 3NVSA 3SWGA 1EYNA 4E7FA 5U4HA 4ZNDA 3SWDA 3FK1A 2O0ZA 4E7GA 3LTHA 1G6SA 4GFPA 3SWIA 1RYWA 1NAWA 3KQAA 2PQBA 2YVWA 2RL1A 4N3PA 2Z2CA 1DLGA 3FK0A 3V5VA 3SPBA 2QFQA 2BJBA 1YBGA 3KQJA 2RL2A 2PQCA 1X8RA 1X8TA 5BQ2A 1G6TA 2GGDA 2PQ9A 4FQDA 3ROIA 4EGRA 4E7CA 2PQDA 2QFTA
chains in the Genus database with same CATH superfamily
2GG6A 5BUFA 2O0DA 1EJCA 3KR6A 2GG4A 3FJXA 1Q36A 2QFUA 3PQVA 1RF5A 1MI4A 3TUTA 3SWEA 1UAEA 3KGDA 3SG1A 3SU9A 3TUXA 1RF6A 4E7EA 3SWQA 4E7BA 3ZH4A 3TI2A 3UPKA 2AA9A 4EIIA 1QMIA 3RMTA 3ISSA 1QMHA 2O15A 3FJZA 2GGAA 3TW3A 1A2NA 1Q3GA 2O0BA 2O0EA 2QFSA 4O89A 3VCYA 4R7UA 3R38A 4O8JA 1P88A 3ZH3A 5BS5A 1RF4A 1EJDA 4E7DA 2O0XA 3V4TA 3SWAA 3TR1A 1P89A 2AAYA 3SLHA 3NVSA 3TV1A 3SWGA 1EYNA 4CLQA 4E7FA 5U4HA 4ZNDA 3SWDA 3FK1A 2O0ZA 4E7GA 3LTHA 1G6SA 4GFPA 3SWIA 1RYWA 1NAWA 3KQAA 2PQBA 2YVWA 2RL1A 4N3PA 2Z2CA 1DLGA 3FK0A 3V5VA 3SPBA 2QFQA 2BJBA 1YBGA 3KQJA 2RL2A 2PQCA 1X8RA 1X8TA 5BQ2A 1G6TA 2GGDA 2PQ9A 4FQDA 3ROIA 4EGRA 4E7CA 2PQDA 2QFTA
chains in the Genus database with same CATH topology
2GG6A 5BUFA 2O0DA 1EJCA 3KR6A 2GG4A 3FJXA 1Q36A 2QFUA 1RF5A 1MI4A 3SWEA 1UAEA 3SG1A 3SU9A 1RF6A 4E7EA 3SWQA 4E7BA 3ZH4A 3TI2A 3UPKA 2AA9A 4EIIA 3RMTA 3ISSA 2O15A 3FJZA 2GGAA 1A2NA 1Q3GA 2O0BA 2O0EA 2QFSA 3VCYA 4R7UA 3R38A 1P88A 3ZH3A 5BS5A 1RF4A 1EJDA 4E7DA 2O0XA 3V4TA 3SWAA 3TR1A 1P89A 2AAYA 3SLHA 3NVSA 3SWGA 1EYNA 4E7FA 5U4HA 4ZNDA 3SWDA 3FK1A 2O0ZA 4E7GA 3LTHA 1G6SA 4GFPA 3SWIA 1RYWA 1NAWA 3KQAA 2PQBA 2YVWA 2RL1A 4N3PA 2Z2CA 1DLGA 3FK0A 3V5VA 3SPBA 2QFQA 2BJBA 1YBGA 3KQJA 2RL2A 2PQCA 1X8RA 1X8TA 5BQ2A 1G6TA 2GGDA 2PQ9A 4FQDA 3ROIA 4EGRA 4E7CA 2PQDA 2QFTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GG6 A;  5BUF A;  2O0D A;  1EJC A;  3KR6 A;  2GG4 A;  3FJX A;  1Q36 A;  2QFU A;  1RF5 A;  1MI4 A;  3SWE A;  1UAE A;  3SG1 A;  3SU9 A;  1RF6 A;  4E7E A;  3SWQ A;  4E7B A;  3ZH4 A;  3TI2 A;  3UPK A;  2AA9 A;  4EII A;  3RMT A;  3ISS A;  2O15 A;  3FJZ A;  2GGA A;  1A2N A;  1Q3G A;  2O0B A;  2O0E A;  2QFS A;  3VCY A;  4R7U A;  3R38 A;  1P88 A;  3ZH3 A;  5BS5 A;  1RF4 A;  1EJD A;  4E7D A;  2O0X A;  3V4T A;  3SWA A;  3TR1 A;  1P89 A;  2AAY A;  3SLH A;  3NVS A;  3SWG A;  1EYN A;  4E7F A;  5U4H A;  4ZND A;  3SWD A;  3FK1 A;  2O0Z A;  4E7G A;  3LTH A;  1G6S A;  4GFP A;  3SWI A;  1RYW A;  1NAW A;  3KQA A;  2PQB A;  2YVW A;  2RL1 A;  4N3P A;  2Z2C A;  1DLG A;  3FK0 A;  3V5V A;  3SPB A;  2QFQ A;  2BJB A;  1YBG A;  3KQJ A;  2RL2 A;  2PQC A;  1X8R A;  1X8T A;  5BQ2 A;  1G6T A;  2GGD A;  2PQ9 A;  4FQD A;  3ROI A;  4EGR A;  4E7C A;  2PQD A;  2QFT A; 
#chains in the Genus database with same CATH topology
 2GG6 A;  5BUF A;  2O0D A;  1EJC A;  3KR6 A;  2GG4 A;  3FJX A;  1Q36 A;  2QFU A;  3PQV A;  1RF5 A;  1MI4 A;  3TUT A;  3SWE A;  1UAE A;  3KGD A;  3SG1 A;  3SU9 A;  3TUX A;  1RF6 A;  4E7E A;  3SWQ A;  4E7B A;  3ZH4 A;  3TI2 A;  3UPK A;  2AA9 A;  4EII A;  1QMI A;  3RMT A;  3ISS A;  1QMH A;  2O15 A;  3FJZ A;  2GGA A;  3TW3 A;  1A2N A;  1Q3G A;  2O0B A;  2O0E A;  2QFS A;  4O89 A;  3VCY A;  4R7U A;  3R38 A;  4O8J A;  1P88 A;  3ZH3 A;  5BS5 A;  1RF4 A;  1EJD A;  4E7D A;  2O0X A;  3V4T A;  3SWA A;  3TR1 A;  1P89 A;  2AAY A;  3SLH A;  3NVS A;  3TV1 A;  3SWG A;  1EYN A;  4CLQ A;  4E7F A;  5U4H A;  4ZND A;  3SWD A;  3FK1 A;  2O0Z A;  4E7G A;  3LTH A;  1G6S A;  4GFP A;  3SWI A;  1RYW A;  1NAW A;  3KQA A;  2PQB A;  2YVW A;  2RL1 A;  4N3P A;  2Z2C A;  1DLG A;  3FK0 A;  3V5V A;  3SPB A;  2QFQ A;  2BJB A;  1YBG A;  3KQJ A;  2RL2 A;  2PQC A;  1X8R A;  1X8T A;  5BQ2 A;  1G6T A;  2GGD A;  2PQ9 A;  4FQD A;  3ROI A;  4EGR A;  4E7C A;  2PQD A;  2QFT A; 
#chains in the Genus database with same CATH homology
 2GG6 A;  5BUF A;  2O0D A;  1EJC A;  3KR6 A;  2GG4 A;  3FJX A;  1Q36 A;  2QFU A;  1RF5 A;  1MI4 A;  3SWE A;  1UAE A;  3SG1 A;  3SU9 A;  1RF6 A;  4E7E A;  3SWQ A;  4E7B A;  3ZH4 A;  3TI2 A;  3UPK A;  2AA9 A;  4EII A;  3RMT A;  3ISS A;  2O15 A;  3FJZ A;  2GGA A;  1A2N A;  1Q3G A;  2O0B A;  2O0E A;  2QFS A;  3VCY A;  4R7U A;  3R38 A;  1P88 A;  3ZH3 A;  5BS5 A;  1RF4 A;  1EJD A;  4E7D A;  2O0X A;  3V4T A;  3SWA A;  3TR1 A;  1P89 A;  2AAY A;  3SLH A;  3NVS A;  3SWG A;  1EYN A;  4E7F A;  5U4H A;  4ZND A;  3SWD A;  3FK1 A;  2O0Z A;  4E7G A;  3LTH A;  1G6S A;  4GFP A;  3SWI A;  1RYW A;  1NAW A;  3KQA A;  2PQB A;  2YVW A;  2RL1 A;  4N3P A;  2Z2C A;  1DLG A;  3FK0 A;  3V5V A;  3SPB A;  2QFQ A;  2BJB A;  1YBG A;  3KQJ A;  2RL2 A;  2PQC A;  1X8R A;  1X8T A;  5BQ2 A;  1G6T A;  2GGD A;  2PQ9 A;  4FQD A;  3ROI A;  4EGR A;  4E7C A;  2PQD A;  2QFT A; 
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