4FQDA

Crystal structure of the enolpyruvyl transferase niko from streptomyces tendae
Total Genus 136
50100150200250300350400020406080100120140
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
136
sequence length
448
structure length
436
Chain Sequence
PGEPLLEIHGGNRLSGAVRTSGFKHSLVTTVAAAATASAPVRIENCPDIVETAVLGEIFRAAGAHAHYDGADETFTVDASAWDRAELPADLVGRIHGSLYLLPALVSRNGVARLSARPDEHLLDVMGRFGVTTRLTADGSVDLTAQRLTPCTIDMLDYTRNKALMSGPCYSGAVKTALLMGAVTHGTTTLQHPYLKPDVTDMVTVLRDLGADIEFAGPETWVIHGRGPESLHRPVDVTLIPDLIEVVTWICAGVLLADEPLRITGPGIDRAVHALAPEFDLLDRMGVRVDVGADEVTAHPLTKPLRPVEFTAMSRGVFSDSQPFLALLGAYAEGPTYIREAVWEHRFGFAPELEALGIRTAVDDTVLRVDGPCPPHRPGTDLRATDLRAAAVLLLAALAVPGRTTLRNHHHLARGYRDLVEDLVKLGADIRHTTAP
50100150200250300350400400300200100
020406080100120Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV9 (428-431)S22 (424-429)S13 (257-260)S1 (14-20)TI6 (239-242)AH12 (409-421)AH6 (191-205)S2 (27-29)AH1 (34-45)3H1 (107-111)AH7 (219-231)S3 (50-54)TIV1 (53-56)AH2 (60-72)TI1 (80-83)S5 (84-88)TI2 (89-92)AH3 (99-103)TVIII2 (181-184)AH5 (141-151)AH4 (112-119)S6 (121-124)TI3 (158-161)S7 (154-157)TIV3 (159-162)TI9 (340-343)S8 (163-166)TI7 (314-317)TVIII1 (167-170)S9 (174-176)3H2 (177-180)TI5 (184-187)AH8 (265-278)S12 (242-248)S16 (317-320)TII1 (287-290)S14 (283-286)S15 (311-313)AH10 (343-352)AH11 (371-378)S17 (331-334)TI8 (335-338)TIV7 (365-368)TIV5 (362-365)S19 (382-385)S18 (356-362)TIV6 (363-366)S21 (402-405)TII'1 (385-388)TIV8 (392-395)3H4 (432-436)S4 (75-79)TIV2 (79-82)TI4 (183-186)S10 (207-213)TIV4 (212-215)AH9 (290-307)S20 (388-393)O2 (422-424)3H3 (250-252)S11 (234-239)Updating...
connected with : NaN
molecule tags Transferase
source organism Streptomyces tendae
publication title Structural and functional characterization of NikO, an enolpyruvyl transferase essential in nikkomycin biosynthesis.
pubmed doi rcsb
molecule keywords NikO protein
total genus 136
structure length 436
sequence length 448
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-06-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00275 EPSP_synthase EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.65.10.10 Alpha Beta Alpha-beta prism UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain Enolpyruvate transferase domain 4fqdA01
3.65.10.10 Alpha Beta Alpha-beta prism UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain Enolpyruvate transferase domain 4fqdA02
3TR1A 4E7CA 2YVWA 2PQBA 4EGRA 2RL2A 3SWGA 1UAEA 3TI2A 2PQCA 1YBGA 2AA9A 1G6SA 2GGAA 1RF6A 3UPKA 4FQDA 3FJXA 4EIIA 3RMTA 1EJCA 4E7BA 1P88A 2PQDA 3R38A 5BQ2A 2AAYA 2O15A 1NAWA 3LTHA 3ZH4A 4E7DA 3SLHA 1A2NA 3SPBA 2O0DA 4GFPA 2QFUA 2O0EA 3ISSA 4ZNDA 1RF5A 3VCYA 3SWQA 3ROIA 3SWAA 5BS5A 3FK0A 3KQJA 3SU9A 4R7UA 1G6TA 4E7EA 5BUFA 1P89A 3V4TA 1X8RA 1RYWA 2Z2CA 3FK1A 3SWDA 2GGDA 3FJZA 2QFQA 2O0BA 1X8TA 2PQ9A 2GG4A 2BJBA 3KR6A 3V5VA 1RF4A 1Q3GA 2QFTA 3KQAA 3NVSA 2RL1A 3ZH3A 4N3PA 3SWEA 2QFSA 2O0ZA 2GG6A 4E7GA 1EYNA 3SG1A 1Q36A 1DLGA 1MI4A 1EJDA 5U4HA 2O0XA 4E7FA 3SWIA
chains in the Genus database with same CATH superfamily
3TR1A 4E7CA 2YVWA 3TUTA 2PQBA 4EGRA 2RL2A 1QMHA 3SWGA 1UAEA 3TI2A 2PQCA 1YBGA 2AA9A 3TUXA 1G6SA 2GGAA 1RF6A 3UPKA 4FQDA 3FJXA 4EIIA 3RMTA 1EJCA 4E7BA 1P88A 2PQDA 3R38A 5BQ2A 2AAYA 2O15A 1NAWA 3LTHA 3ZH4A 4E7DA 3SLHA 1A2NA 3SPBA 2O0DA 4GFPA 2QFUA 2O0EA 3ISSA 4ZNDA 1RF5A 3VCYA 3KGDA 3TW3A 3SWQA 3ROIA 3SWAA 5BS5A 3FK0A 3KQJA 1QMIA 3SU9A 4R7UA 1G6TA 4E7EA 5BUFA 1P89A 4CLQA 3V4TA 1X8RA 1RYWA 2Z2CA 3FK1A 3SWDA 2GGDA 3FJZA 2QFQA 2O0BA 1X8TA 2PQ9A 3TV1A 2GG4A 4O8JA 2BJBA 3KR6A 3V5VA 1RF4A 1Q3GA 2QFTA 3KQAA 3NVSA 3PQVA 2RL1A 3ZH3A 4N3PA 3SWEA 2QFSA 2O0ZA 4O89A 2GG6A 4E7GA 1EYNA 3SG1A 1Q36A 1DLGA 1MI4A 1EJDA 5U4HA 2O0XA 4E7FA 3SWIA
chains in the Genus database with same CATH topology
3TR1A 4E7CA 2YVWA 2PQBA 4EGRA 2RL2A 3SWGA 1UAEA 3TI2A 2PQCA 1YBGA 2AA9A 1G6SA 2GGAA 1RF6A 3UPKA 4FQDA 3FJXA 4EIIA 3RMTA 1EJCA 4E7BA 1P88A 2PQDA 3R38A 5BQ2A 2AAYA 2O15A 1NAWA 3LTHA 3ZH4A 4E7DA 3SLHA 1A2NA 3SPBA 2O0DA 4GFPA 2QFUA 2O0EA 3ISSA 4ZNDA 1RF5A 3VCYA 3SWQA 3ROIA 3SWAA 5BS5A 3FK0A 3KQJA 3SU9A 4R7UA 1G6TA 4E7EA 5BUFA 1P89A 3V4TA 1X8RA 1RYWA 2Z2CA 3FK1A 3SWDA 2GGDA 3FJZA 2QFQA 2O0BA 1X8TA 2PQ9A 2GG4A 2BJBA 3KR6A 3V5VA 1RF4A 1Q3GA 2QFTA 3KQAA 3NVSA 2RL1A 3ZH3A 4N3PA 3SWEA 2QFSA 2O0ZA 2GG6A 4E7GA 1EYNA 3SG1A 1Q36A 1DLGA 1MI4A 1EJDA 5U4HA 2O0XA 4E7FA 3SWIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TR1 A;  4E7C A;  2YVW A;  2PQB A;  4EGR A;  2RL2 A;  3SWG A;  1UAE A;  3TI2 A;  2PQC A;  1YBG A;  2AA9 A;  1G6S A;  2GGA A;  1RF6 A;  3UPK A;  4FQD A;  3FJX A;  4EII A;  3RMT A;  1EJC A;  4E7B A;  1P88 A;  2PQD A;  3R38 A;  5BQ2 A;  2AAY A;  2O15 A;  1NAW A;  3LTH A;  3ZH4 A;  4E7D A;  3SLH A;  1A2N A;  3SPB A;  2O0D A;  4GFP A;  2QFU A;  2O0E A;  3ISS A;  4ZND A;  1RF5 A;  3VCY A;  3SWQ A;  3ROI A;  3SWA A;  5BS5 A;  3FK0 A;  3KQJ A;  3SU9 A;  4R7U A;  1G6T A;  4E7E A;  5BUF A;  1P89 A;  3V4T A;  1X8R A;  1RYW A;  2Z2C A;  3FK1 A;  3SWD A;  2GGD A;  3FJZ A;  2QFQ A;  2O0B A;  1X8T A;  2PQ9 A;  2GG4 A;  2BJB A;  3KR6 A;  3V5V A;  1RF4 A;  1Q3G A;  2QFT A;  3KQA A;  3NVS A;  2RL1 A;  3ZH3 A;  4N3P A;  3SWE A;  2QFS A;  2O0Z A;  2GG6 A;  4E7G A;  1EYN A;  3SG1 A;  1Q36 A;  1DLG A;  1MI4 A;  1EJD A;  5U4H A;  2O0X A;  4E7F A;  3SWI A; 
#chains in the Genus database with same CATH topology
 3TR1 A;  4E7C A;  2YVW A;  3TUT A;  2PQB A;  4EGR A;  2RL2 A;  1QMH A;  3SWG A;  1UAE A;  3TI2 A;  2PQC A;  1YBG A;  2AA9 A;  3TUX A;  1G6S A;  2GGA A;  1RF6 A;  3UPK A;  4FQD A;  3FJX A;  4EII A;  3RMT A;  1EJC A;  4E7B A;  1P88 A;  2PQD A;  3R38 A;  5BQ2 A;  2AAY A;  2O15 A;  1NAW A;  3LTH A;  3ZH4 A;  4E7D A;  3SLH A;  1A2N A;  3SPB A;  2O0D A;  4GFP A;  2QFU A;  2O0E A;  3ISS A;  4ZND A;  1RF5 A;  3VCY A;  3KGD A;  3TW3 A;  3SWQ A;  3ROI A;  3SWA A;  5BS5 A;  3FK0 A;  3KQJ A;  1QMI A;  3SU9 A;  4R7U A;  1G6T A;  4E7E A;  5BUF A;  1P89 A;  4CLQ A;  3V4T A;  1X8R A;  1RYW A;  2Z2C A;  3FK1 A;  3SWD A;  2GGD A;  3FJZ A;  2QFQ A;  2O0B A;  1X8T A;  2PQ9 A;  3TV1 A;  2GG4 A;  4O8J A;  2BJB A;  3KR6 A;  3V5V A;  1RF4 A;  1Q3G A;  2QFT A;  3KQA A;  3NVS A;  3PQV A;  2RL1 A;  3ZH3 A;  4N3P A;  3SWE A;  2QFS A;  2O0Z A;  4O89 A;  2GG6 A;  4E7G A;  1EYN A;  3SG1 A;  1Q36 A;  1DLG A;  1MI4 A;  1EJD A;  5U4H A;  2O0X A;  4E7F A;  3SWI A; 
#chains in the Genus database with same CATH homology
 3TR1 A;  4E7C A;  2YVW A;  2PQB A;  4EGR A;  2RL2 A;  3SWG A;  1UAE A;  3TI2 A;  2PQC A;  1YBG A;  2AA9 A;  1G6S A;  2GGA A;  1RF6 A;  3UPK A;  4FQD A;  3FJX A;  4EII A;  3RMT A;  1EJC A;  4E7B A;  1P88 A;  2PQD A;  3R38 A;  5BQ2 A;  2AAY A;  2O15 A;  1NAW A;  3LTH A;  3ZH4 A;  4E7D A;  3SLH A;  1A2N A;  3SPB A;  2O0D A;  4GFP A;  2QFU A;  2O0E A;  3ISS A;  4ZND A;  1RF5 A;  3VCY A;  3SWQ A;  3ROI A;  3SWA A;  5BS5 A;  3FK0 A;  3KQJ A;  3SU9 A;  4R7U A;  1G6T A;  4E7E A;  5BUF A;  1P89 A;  3V4T A;  1X8R A;  1RYW A;  2Z2C A;  3FK1 A;  3SWD A;  2GGD A;  3FJZ A;  2QFQ A;  2O0B A;  1X8T A;  2PQ9 A;  2GG4 A;  2BJB A;  3KR6 A;  3V5V A;  1RF4 A;  1Q3G A;  2QFT A;  3KQA A;  3NVS A;  2RL1 A;  3ZH3 A;  4N3P A;  3SWE A;  2QFS A;  2O0Z A;  2GG6 A;  4E7G A;  1EYN A;  3SG1 A;  1Q36 A;  1DLG A;  1MI4 A;  1EJD A;  5U4H A;  2O0X A;  4E7F A;  3SWI A; 
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