5BQ2A

Crystal structure of udp-n-acetylglucosamine 1-carboxyvinyltransferase (udp-n-acetylglucosamine enolpyruvyl transferase, ept) from pseudomonas aeruginosa
Total Genus 149
50100150200250300350400020406080100120140
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
149
sequence length
425
structure length
424
Chain Sequence
HHHHMDKLIITGGNRLDGEIRISGAKNSALPILAATLLADTPVTVCNLPHLHDITTMIELFGRMGVQPIIDEKLNVEVDASSIKTLVAPYELVKTMRASILVLGPMLARFGEAEVALPGGAIGSRPVDLHIRGLEAMGAQIEVEGGYIKAKAPAGGLRGGHFFFDTVSVTGTENLMMAAALANGRTVLQNAAREPEVVDLANCLNAMGANVQGAGSDTIVIEGVKRLGGARYDVLPDRIETGTYLVAAAATGGRVKLKDTDPTILEAVLQKLEEAGAHISTGSNWIELDMKGNRPKAVNVRTAPYPAFPTDMQAQFISMNAVAEGTGAVIETVFENRFMHVYEMNRMGAQILVEGNTAIVTGVPKLKGAPVMATDLRASASLVIAGLVAEGDTLIDRIYHIDRGYECIEEKLQLLGAKIRRVPG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH14 (405-411)TI1 (-1-2)S2 (13-17)S24 (386-387)S26 (415-419)3H3 (259-261)EMPTYAH1 (22-31)AH2 (48-60)AH7 (192-204)TIV1 (35-38)S3 (39-42)S7 (108-112)S14 (228-230)TIV2 (90-93)S4 (65-66)S6 (83-84)TI2 (67-70)TI3 (75-78)S5 (72-74)TI4 (76-79)AH3 (86-90)S9 (144-148)3H2 (93-98)AH5 (125-133)AH4 (99-106)TII1 (150-153)AH6 (166-177)S10 (158-160)S8 (137-141)TIV3 (140-143)TIV4 (185-188)TVIII1 (161-164)S13 (216-220)TIV6 (302-305)S12 (208-209)TII2 (210-213)AH12 (376-385)AH8 (235-248)AH10 (310-318)S15 (251-255)S17 (282-286)TIV5 (254-257)AH9 (263-272)S18 (297-299)S16 (275-279)TI'2 (287-290)TI5 (279-282)TIV7 (328-331)TVIII2 (329-332)TVIa1 (301-304)3H4 (307-309)S22 (363-364)AH11 (335-344)TIV8 (331-334)S20 (347-351)S23 (367-369)TII'1 (351-354)S25 (389-393)TIV10 (392-395)AH13 (395-401)TI6 (372-375)TIV11 (402-405)S1 (3-7)3H1 (32-34)S11 (181-186)S19 (323-328)S21 (354-358)Updating...
connected with : NaN
molecule tags Transferase
source organism Pseudomonas aeruginosa pao1
publication title Crystal structure of UDP-N-acetylglucosamine 1-carboxyvinyltransferase (UDP-N-acetylglucosamine enolpyruvyl transferase, EPT) from Pseudomonas aeruginosa
rcsb
molecule keywords UDP-N-acetylglucosamine 1-carboxyvinyltransferase
total genus 149
structure length 424
sequence length 425
chains with identical sequence B, C, D
ec nomenclature ec 2.5.1.7: UDP-N-acetylglucosamine 1-carboxyvinyltransferase.
pdb deposition date 2015-05-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00275 EPSP_synthase EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.65.10.10 Alpha Beta Alpha-beta prism UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain Enolpyruvate transferase domain 5bq2A02
3.65.10.10 Alpha Beta Alpha-beta prism UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain Enolpyruvate transferase domain 5bq2A01
2QFUA 1G6SA 3SWQA 3ROIA 1A2NA 4EGRA 2GGDA 4ZNDA 3SWEA 1EJDA 3ZH3A 2QFSA 2RL2A 5BS5A 3SWGA 3VCYA 1DLGA 1EJCA 2PQBA 3SLHA 3SWAA 4E7BA 1YBGA 2PQCA 1P89A 2RL1A 4N3PA 3SPBA 3UPKA 1X8TA 2O0XA 3SU9A 4E7DA 3SG1A 3TR1A 2YVWA 3NVSA 1RYWA 3SWIA 3FK1A 1EYNA 2GG6A 3KR6A 3TI2A 2Z2CA 2PQDA 2PQ9A 5BQ2A 3SWDA 1X8RA 3ZH4A 2GG4A 2O15A 2O0BA 1NAWA 2BJBA 5U4HA 3FJZA 1P88A 4E7GA 2AAYA 2GGAA 3KQJA 4FQDA 2AA9A 1Q3GA 4EIIA 3LTHA 1RF4A 1UAEA 3ISSA 5BUFA 1RF5A 2O0EA 3V4TA 2O0DA 4E7CA 4E7FA 4R7UA 3FK0A 3V5VA 4E7EA 3RMTA 3KQAA 1Q36A 3R38A 2QFQA 1RF6A 3FJXA 2O0ZA 2QFTA 4GFPA 1G6TA 1MI4A
chains in the Genus database with same CATH superfamily
1QMHA 2QFUA 1G6SA 3KGDA 3SWQA 3ROIA 1A2NA 4EGRA 2GGDA 4ZNDA 3SWEA 1EJDA 3ZH3A 2QFSA 2RL2A 4O89A 5BS5A 3SWGA 3VCYA 1DLGA 1EJCA 2PQBA 3SLHA 3SWAA 4E7BA 1YBGA 2PQCA 1P89A 2RL1A 4N3PA 3SPBA 3UPKA 1X8TA 2O0XA 3SU9A 4E7DA 3SG1A 3TR1A 2YVWA 3NVSA 1RYWA 3SWIA 3FK1A 1EYNA 2GG6A 3KR6A 3TI2A 2Z2CA 2PQDA 2PQ9A 5BQ2A 3SWDA 4CLQA 1X8RA 3ZH4A 2GG4A 2O15A 2O0BA 1NAWA 2BJBA 5U4HA 3FJZA 1P88A 4E7GA 2AAYA 2GGAA 3KQJA 4FQDA 2AA9A 1Q3GA 4EIIA 3TW3A 3LTHA 1RF4A 1UAEA 3ISSA 5BUFA 1RF5A 2O0EA 3V4TA 3PQVA 2O0DA 4E7CA 4E7FA 4R7UA 3FK0A 3TUTA 4O8JA 1QMIA 3V5VA 4E7EA 3RMTA 3KQAA 1Q36A 3R38A 2QFQA 1RF6A 3FJXA 2O0ZA 2QFTA 3TV1A 4GFPA 1G6TA 3TUXA 1MI4A
chains in the Genus database with same CATH topology
2QFUA 1G6SA 3SWQA 3ROIA 1A2NA 4EGRA 2GGDA 4ZNDA 3SWEA 1EJDA 3ZH3A 2QFSA 2RL2A 5BS5A 3SWGA 3VCYA 1DLGA 1EJCA 2PQBA 3SLHA 3SWAA 4E7BA 1YBGA 2PQCA 1P89A 2RL1A 4N3PA 3SPBA 3UPKA 1X8TA 2O0XA 3SU9A 4E7DA 3SG1A 3TR1A 2YVWA 3NVSA 1RYWA 3SWIA 3FK1A 1EYNA 2GG6A 3KR6A 3TI2A 2Z2CA 2PQDA 2PQ9A 5BQ2A 3SWDA 1X8RA 3ZH4A 2GG4A 2O15A 2O0BA 1NAWA 2BJBA 5U4HA 3FJZA 1P88A 4E7GA 2AAYA 2GGAA 3KQJA 4FQDA 2AA9A 1Q3GA 4EIIA 3LTHA 1RF4A 1UAEA 3ISSA 5BUFA 1RF5A 2O0EA 3V4TA 2O0DA 4E7CA 4E7FA 4R7UA 3FK0A 3V5VA 4E7EA 3RMTA 3KQAA 1Q36A 3R38A 2QFQA 1RF6A 3FJXA 2O0ZA 2QFTA 4GFPA 1G6TA 1MI4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QFU A;  1G6S A;  3SWQ A;  3ROI A;  1A2N A;  4EGR A;  2GGD A;  4ZND A;  3SWE A;  1EJD A;  3ZH3 A;  2QFS A;  2RL2 A;  5BS5 A;  3SWG A;  3VCY A;  1DLG A;  1EJC A;  2PQB A;  3SLH A;  3SWA A;  4E7B A;  1YBG A;  2PQC A;  1P89 A;  2RL1 A;  4N3P A;  3SPB A;  3UPK A;  1X8T A;  2O0X A;  3SU9 A;  4E7D A;  3SG1 A;  3TR1 A;  2YVW A;  3NVS A;  1RYW A;  3SWI A;  3FK1 A;  1EYN A;  2GG6 A;  3KR6 A;  3TI2 A;  2Z2C A;  2PQD A;  2PQ9 A;  5BQ2 A;  3SWD A;  1X8R A;  3ZH4 A;  2GG4 A;  2O15 A;  2O0B A;  1NAW A;  2BJB A;  5U4H A;  3FJZ A;  1P88 A;  4E7G A;  2AAY A;  2GGA A;  3KQJ A;  4FQD A;  2AA9 A;  1Q3G A;  4EII A;  3LTH A;  1RF4 A;  1UAE A;  3ISS A;  5BUF A;  1RF5 A;  2O0E A;  3V4T A;  2O0D A;  4E7C A;  4E7F A;  4R7U A;  3FK0 A;  3V5V A;  4E7E A;  3RMT A;  3KQA A;  1Q36 A;  3R38 A;  2QFQ A;  1RF6 A;  3FJX A;  2O0Z A;  2QFT A;  4GFP A;  1G6T A;  1MI4 A; 
#chains in the Genus database with same CATH topology
 1QMH A;  2QFU A;  1G6S A;  3KGD A;  3SWQ A;  3ROI A;  1A2N A;  4EGR A;  2GGD A;  4ZND A;  3SWE A;  1EJD A;  3ZH3 A;  2QFS A;  2RL2 A;  4O89 A;  5BS5 A;  3SWG A;  3VCY A;  1DLG A;  1EJC A;  2PQB A;  3SLH A;  3SWA A;  4E7B A;  1YBG A;  2PQC A;  1P89 A;  2RL1 A;  4N3P A;  3SPB A;  3UPK A;  1X8T A;  2O0X A;  3SU9 A;  4E7D A;  3SG1 A;  3TR1 A;  2YVW A;  3NVS A;  1RYW A;  3SWI A;  3FK1 A;  1EYN A;  2GG6 A;  3KR6 A;  3TI2 A;  2Z2C A;  2PQD A;  2PQ9 A;  5BQ2 A;  3SWD A;  4CLQ A;  1X8R A;  3ZH4 A;  2GG4 A;  2O15 A;  2O0B A;  1NAW A;  2BJB A;  5U4H A;  3FJZ A;  1P88 A;  4E7G A;  2AAY A;  2GGA A;  3KQJ A;  4FQD A;  2AA9 A;  1Q3G A;  4EII A;  3TW3 A;  3LTH A;  1RF4 A;  1UAE A;  3ISS A;  5BUF A;  1RF5 A;  2O0E A;  3V4T A;  3PQV A;  2O0D A;  4E7C A;  4E7F A;  4R7U A;  3FK0 A;  3TUT A;  4O8J A;  1QMI A;  3V5V A;  4E7E A;  3RMT A;  3KQA A;  1Q36 A;  3R38 A;  2QFQ A;  1RF6 A;  3FJX A;  2O0Z A;  2QFT A;  3TV1 A;  4GFP A;  1G6T A;  3TUX A;  1MI4 A; 
#chains in the Genus database with same CATH homology
 2QFU A;  1G6S A;  3SWQ A;  3ROI A;  1A2N A;  4EGR A;  2GGD A;  4ZND A;  3SWE A;  1EJD A;  3ZH3 A;  2QFS A;  2RL2 A;  5BS5 A;  3SWG A;  3VCY A;  1DLG A;  1EJC A;  2PQB A;  3SLH A;  3SWA A;  4E7B A;  1YBG A;  2PQC A;  1P89 A;  2RL1 A;  4N3P A;  3SPB A;  3UPK A;  1X8T A;  2O0X A;  3SU9 A;  4E7D A;  3SG1 A;  3TR1 A;  2YVW A;  3NVS A;  1RYW A;  3SWI A;  3FK1 A;  1EYN A;  2GG6 A;  3KR6 A;  3TI2 A;  2Z2C A;  2PQD A;  2PQ9 A;  5BQ2 A;  3SWD A;  1X8R A;  3ZH4 A;  2GG4 A;  2O15 A;  2O0B A;  1NAW A;  2BJB A;  5U4H A;  3FJZ A;  1P88 A;  4E7G A;  2AAY A;  2GGA A;  3KQJ A;  4FQD A;  2AA9 A;  1Q3G A;  4EII A;  3LTH A;  1RF4 A;  1UAE A;  3ISS A;  5BUF A;  1RF5 A;  2O0E A;  3V4T A;  2O0D A;  4E7C A;  4E7F A;  4R7U A;  3FK0 A;  3V5V A;  4E7E A;  3RMT A;  3KQA A;  1Q36 A;  3R38 A;  2QFQ A;  1RF6 A;  3FJX A;  2O0Z A;  2QFT A;  4GFP A;  1G6T A;  1MI4 A; 
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