1LN4A

Crystal structure of e. coli yhby
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
98
structure length
98
Chain Sequence
MDLSTKQKQHLKGLAHPLKPVVLLGSNGLTEGVLAEIEQALEHHELIKVKIATEDRETKTLIVEAIVRETGACNVQVIGKTLVLYRPTKERKISLPLE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of E. coli YhbY: a representative of a novel class of RNA binding proteins
pubmed doi rcsb
molecule tags Rna binding protein
source organism Escherichia coli
molecule keywords Hypothetical protein yhbY
total genus 32
structure length 98
sequence length 98
ec nomenclature
pdb deposition date 2002-05-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01985 CRS1_YhbY CRS1 / YhbY (CRM) domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.110.60 Alpha Beta 2-Layer Sandwich Translation Initiation Factor IF3 YhbY-like 1ln4A00
1RQ8A 1LN4A 1JO0A
chains in the Genus database with same CATH superfamily
4FBKA 4FBWA 1JDQA 3TSUA 4WI1A 1NFJA 3WBMA 1NJ5A 4FBQA 1NJ1A 2L8YA 1XEZA 3TOEA 4K87A 4HD0A 1H0XA 1LN4A 3DSCA 1NJ6A 3TTDA 1II7A 1H4TA 3VTHA 3TSPA 2P9BA 1VM0A 4HVCA 1H0YA 4K88A 2M71A 4YDQA 3LVJC 3LVKB 4EO0A 1JE3A 3U6YA 3T1IA 1H4QA 1H4SA 1NFHA 3HZ7A 3DSDA 4FCXA 1DCJA 2Q3VA 2Y1BA 2EK0A 1NJ2A 1TIGA 3TTFA 3IABB 3ZIEA 2GTCA 4Q15A 2CRQA 3TSQA 1RQ8A 2IFEA 4YKEA 2H9UA 4OLFA 4K86A 1PAVA 1S8EA 4HVZA 1JO0A 2LN3A 3QKBA 4TWAA 2BKYX 1NH9A 4NZRM 3IALA 2A2YA 3ZIIA 1VR4A 4Z9EA 3ZIGA 4NCXA 3TTCA 2LXRA 3ZIHA 1UDVA 3VTIA 1NJ8A 1Y9XA 3P04A 1HC7A 2Z7CA 3IABA 4NZTM 2EH1A 1Y2IA
chains in the Genus database with same CATH topology
1RQ8A 1LN4A 1JO0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RQ8 A;  1LN4 A;  1JO0 A; 
#chains in the Genus database with same CATH topology
 4FBK A;  4FBW A;  1JDQ A;  3TSU A;  4WI1 A;  1NFJ A;  3WBM A;  1NJ5 A;  4FBQ A;  1NJ1 A;  2L8Y A;  1XEZ A;  3TOE A;  4K87 A;  4HD0 A;  1H0X A;  1LN4 A;  3DSC A;  1NJ6 A;  3TTD A;  1II7 A;  1H4T A;  3VTH A;  3TSP A;  2P9B A;  1VM0 A;  4HVC A;  1H0Y A;  4K88 A;  2M71 A;  4YDQ A;  3LVJ C;  3LVK B;  4EO0 A;  1JE3 A;  3U6Y A;  3T1I A;  1H4Q A;  1H4S A;  1NFH A;  3HZ7 A;  3DSD A;  4FCX A;  1DCJ A;  2Q3V A;  2Y1B A;  2EK0 A;  1NJ2 A;  1TIG A;  3TTF A;  3IAB B;  3ZIE A;  2GTC A;  4Q15 A;  2CRQ A;  3TSQ A;  1RQ8 A;  2IFE A;  4YKE A;  2H9U A;  4OLF A;  4K86 A;  1PAV A;  1S8E A;  4HVZ A;  1JO0 A;  2LN3 A;  3QKB A;  4TWA A;  2BKY X;  1NH9 A;  4NZR M;  3IAL A;  2A2Y A;  3ZII A;  1VR4 A;  4Z9E A;  3ZIG A;  4NCX A;  3TTC A;  2LXR A;  3ZIH A;  1UDV A;  3VTI A;  1NJ8 A;  1Y9X A;  3P04 A;  1HC7 A;  2Z7C A;  3IAB A;  4NZT M;  2EH1 A;  1Y2I A; 
#chains in the Genus database with same CATH homology
 1RQ8 A;  1LN4 A;  1JO0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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