The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
135
|
sequence length |
464
|
structure length |
424
|
Chain Sequence |
DDKAFEENRRLRNLGSVEYIRIRKNFKKFQKSENTIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARERDVDMILLGGDIFHDNKPSRKALYQALRSLRLNCLGDKPCELELLSDTDTAVCNINYLDPNINVAIPVFSIHGNHDDPSGRYSALDILQVTGLVNYFGRVPENDNIVVSPILLQKGFTKLALYGISNVRDERLYHSFRENKVKFLRPDLYRDEWFNLLTVHQNHSAHTPTSYLPESFIQDFYDFVLWGHEHECLIDGSYNPTQKFTVVQPGSTIATSLSPGETAPKHCGILNITGKDFHLEKIRLRTVRPFIMKDIILSEVSSIPPMVENKKEVLTYLISKVEEAITEANAQWYEAQGTVPVVENEKPPLPLIRLRVDYTGGYQTENPQRFSNRFVGRVANATDVVQFYLKK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure of Mre11-Nbs1 complex yields insights into ataxia-telangiectasia-like disease mutations and DNA damage signaling.
pubmed doi rcsb |
| molecule keywords |
DNA repair and telomere maintenance protein nbs1,DNA repair
|
| molecule tags |
Hydrolase, protein binding
|
| source organism |
Schizosaccharomyces pombe
|
| total genus |
135
|
| structure length |
424
|
| sequence length |
464
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2012-05-23 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00149 | Metallophos | Calcineurin-like phosphoesterase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Translation Initiation Factor IF3 | Translation Initiation Factor IF3 | ||
| Alpha Beta | 4-Layer Sandwich | Purple Acid Phosphatase; chain A, domain 2 | Purple Acid Phosphatase; chain A, domain 2 |
#chains in the Genus database with same CATH superfamily 5JPE A; 4ORA A; 2O8G A; 1HO5 A; 4TUI A; 1II7 A; 1OI8 A; 1SU1 A; 4F0Z A; 5J28 A; 4V0X A; 4JA7 A; 1QHW A; 4V0W A; 1NNW A; 1WAO 1; 2WDD A; 3E7B A; 3P71 C; 3DSC A; 3QFK A; 1UTE A; 3PSO A; 4XPN A; 2BDX A; 3RL4 A; 4KKZ A; 2KKN A; 3IB8 A; 4OR9 A; 4UWQ A; 2QFP A; 3ZU0 A; 1XZW A; 3QFM A; 4MP0 A; 4M0V A; 4DHL A; 4MOY A; 4FBW A; 1W24 A; 3PSN A; 1S3N A; 3QFO A; 3V4Y A; 3RL5 A; 3THN A; 2O8A A; 2XMO A; 2IE4 C; 2P6B A; 4NZV A; 3N5U A; 2GJU A; 1S3M A; 3H69 A; 4UT3 B; 2DFJ A; 4O43 A; 2NPP C; 3TGH A; 1OIE A; 4O4K A; 5JPF A; 1S3L A; 1S8E A; 5EQV A; 1USH A; 2HY1 A; 2Z72 A; 4ZVZ A; 3THO B; 5B8I A; 4FBK A; 1IT6 A; 4DT2 A; 3DSD A; 1JK7 A; 1U32 A; 3CK2 A; 3T1I A; 4H2F A; 5JJT A; 4HD0 A; 4ORC A; 4UT3 A; 4V0V A; 4B2O A; 2HYO A; 3IVD A; 1TCO A; 2QJC A; 2BQ8 X; 3H66 A; 2USH A; 4LU9 A; 4Q7F A; 4TUG A; 1FJM A; 2BCD A; 1Z2W A; 5GTU A; 4O24 A; 2WDE A; 2HYP A; 3IB7 A; 1KBP A; 3H61 A; 1WAR A; 1MF8 A; 4FCX A; 4FBQ A; 3FGA C; 4H1Y P; 4IL1 A; 2ZBM A; 4H2G A; 4YKE A; 2WDF A; 4UT2 A; 4I5N C; 3H63 A; 4H2I A; 4H2B A; 4JA9 A; 4I5L C; 3GVE A; 1T70 A; 2NYL C; 4LAC C; 3H64 A; 4MOV A; 2IE3 C; 4DSY A; 3H62 B; 5HPE A; 1OID A; 4KBP A; 5IOH A; 2CV9 A; 1Z2X A; 3HVQ A; 3DW8 C; 2AHD A; 3AUZ A; 3C5W C; 3K7V C; 1V73 A; 2NXF A; 2IAE C; 2WDC A; 3ZTV A; 3H67 A; 1S95 A; 3QFN A; 3H60 A; 4H1S A; 3RL3 A; 2JOG A; 3JYF A; 3K7W C; 4LTY A; 1HPU A; 3QG5 C; 4J6O A; 4ORB A; 1XM7 A; 1M63 A; 3KBP A; 3RQZ A; 2NYM C; 4ZX2 A; 3C9F A; 1AUI A; 2Z1A A; 3LL8 A; 2Q8U A; 5C1V A; 3ICF A; 4G9J A; 4O5G A; 1QFC A; 5F3W A; 5DNY A; 2Z06 A; 1G5B A; 4IYP C; 2QFR A; 1UF3 A; 1T71 A; 3H68 A; 1HP1 A; 3EGG A; 5INB A; 2YVT A; 3IVE A; 2A22 A; 3AV0 A; 4WWL A; 3EGH A; 3E7A A; 2R17 A; 1S70 A; #chains in the Genus database with same CATH topology 5JPE A; 3D03 A; 4ORA A; 2Y1B A; 2O8G A; 1HO5 A; 3ZIE A; 4YDQ A; 2DXL A; 1II7 A; 4TUI A; 1H0Y A; 1OI8 A; 1SU1 A; 4F0Z A; 5J28 A; 4V0X A; 4OLF A; 4JA7 A; 3WBM A; 1QHW A; 4V0W A; 1VR4 A; 1NFH A; 1NNW A; 3TSP A; 2LXR A; 1WAO 1; 2WDD A; 3E7B A; 3P71 C; 4K86 A; 1H0X A; 3DSC A; 3TTD A; 3QFK A; 2M71 A; 1UTE A; 3PSO A; 4XPN A; 2BDX A; 3RL4 A; 4KKZ A; 2KKN A; 3IB8 A; 4OR9 A; 4UWQ A; 2QFP A; 3ZU0 A; 1HC7 A; 4Q15 A; 1XZW A; 3IAB B; 3QFM A; 4MP0 A; 4M0V A; 1LN4 A; 3TTC A; 4DHL A; 4MOY A; 4FBW A; 1W24 A; 2YEQ A; 3PSN A; 1Y9X A; 1S3N A; 3QFO A; 3V4Y A; 3RL5 A; 3THN A; 2O8A A; 2XMO A; 4WI1 A; 2IE4 C; 2P6B A; 4NZV A; 1NJ5 A; 3N5U A; 3TSQ A; 4HVC A; 2GJU A; 2P9B A; 1S3M A; 3H69 A; 4UT3 B; 1DCJ A; 2DFJ A; 4O43 A; 2L8Y A; 4K87 A; 1OIE A; 2NPP C; 1NJ8 A; 3QKB A; 4O4K A; 3TGH A; 3IAB A; 5JPF A; 4NCX A; 1S3L A; 1S8E A; 5EQV A; 2IFE A; 1USH A; 2HY1 A; 2DXN A; 1NJ1 A; 2A2Y A; 3IAL A; 4FBK A; 2Z72 A; 4ZVZ A; 2H9U A; 3THO B; 1IT6 A; 4DT2 A; 3DSD A; 1JK7 A; 4NZR M; 1U32 A; 3CK2 A; 3T1I A; 4H2F A; 5JJT A; 4HD0 A; 4ORC A; 4UT3 A; 4K88 A; 4V0V A; 4B2O A; 1H4S A; 2HYO A; 3IVD A; 1TCO A; 5B8I A; 2BKY X; 2QJC A; 2BQ8 X; 3H66 A; 2USH A; 4LU9 A; 4Q7F A; 4TUG A; 1FJM A; 1NJ6 A; 1Z2W A; 3VTI A; 2BCD A; 4O24 A; 5GTU A; 2WDE A; 3LVK B; 1NH9 A; 3ZIG A; 2HYP A; 2EK0 A; 3TTF A; 4Z9E A; 3IB7 A; 1KBP A; 3H61 A; 1H4T A; 1WAR A; 3P04 A; 1MF8 A; 4FCX A; 4FBQ A; 3FLO A; 3FGA C; 4H1Y P; 4IL1 A; 2ZBM A; 4H2G A; 4YKE A; 3LVJ C; 2WDF A; 4UT2 A; 4I5N C; 3H63 A; 4H2I A; 4H2B A; 4JA9 A; 4I5L C; 3GVE A; 1T70 A; 2NYL C; 4LAC C; 3U6Y A; 3H64 A; 3VTH A; 2ZO9 B; 4MOV A; 2IE3 C; 2GTC A; 4DSY A; 1Y2I A; 3TOE A; 3H62 B; 5HPE A; 1TIG A; 1OID A; 2LN3 A; 4KBP A; 5IOH A; 2CV9 A; 1Z2X A; 3HVQ A; 3DW8 C; 2AHD A; 3AUZ A; 3C5W C; 4NZT M; 3K7V C; 1V73 A; 2NXF A; 3TSU A; 2IAE C; 2WDC A; 3ZII A; 3H67 A; 1JE3 A; 1S95 A; 3ZTV A; 4EO0 A; 4TWA A; 2CRQ A; 3QFN A; 3H60 A; 4H1S A; 3RL3 A; 2JOG A; 3JYF A; 3K7W C; 4LTY A; 1HPU A; 3QG5 C; 4J6O A; 1RQ8 A; 4ORB A; 1XEZ A; 4HVZ A; 1XM7 A; 1M63 A; 1PAV A; 3KBP A; 3RQZ A; 2NYM C; 4ZX2 A; 3C9F A; 1AUI A; 2Z1A A; 1JDQ A; 2Q8U A; 2Z7C A; 3ICF A; 3LL8 A; 4G9J A; 5C1V A; 4O5G A; 1QFC A; 5F3W A; 1UDV A; 5DNY A; 1H4Q A; 2Z06 A; 1VM0 A; 1NJ2 A; 3E0J A; 3ZIH A; 1JO0 A; 2EH1 A; 1G5B A; 4IYP C; 2QFR A; 2Q3V A; 1UF3 A; 1T71 A; 3H68 A; 1HP1 A; 3EGG A; 5INB A; 2YVT A; 3IVE A; 2A22 A; 3AV0 A; 4WWL A; 3EGH A; 3HZ7 A; 3E7A A; 2ZOA A; 1NFJ A; 2R17 A; 1S70 A; #chains in the Genus database with same CATH homology 5JPE A; 3D03 A; 4ORA A; 2O8G A; 1HO5 A; 3ZIE A; 2DXL A; 4TUI A; 1II7 A; 1OI8 A; 1SU1 A; 4F0Z A; 5J28 A; 4V0X A; 4JA7 A; 1QHW A; 4V0W A; 1NNW A; 3TSP A; 1WAO 1; 2WDD A; 3E7B A; 3P71 C; 3DSC A; 3TTD A; 3QFK A; 1UTE A; 3PSO A; 4XPN A; 2BDX A; 3RL4 A; 4KKZ A; 2KKN A; 3IB8 A; 4OR9 A; 4UWQ A; 2QFP A; 3ZU0 A; 1XZW A; 3QFM A; 4MP0 A; 4M0V A; 3TTC A; 4DHL A; 4MOY A; 4FBW A; 1W24 A; 2YEQ A; 3PSN A; 1S3N A; 3QFO A; 3V4Y A; 3RL5 A; 3THN A; 2O8A A; 2XMO A; 2IE4 C; 2P6B A; 4NZV A; 3N5U A; 3TSQ A; 2GJU A; 2P9B A; 1S3M A; 3H69 A; 4UT3 B; 2DFJ A; 4O43 A; 2NPP C; 3TGH A; 1OIE A; 4O4K A; 5JPF A; 1S3L A; 1S8E A; 5EQV A; 1USH A; 2HY1 A; 2DXN A; 2Z72 A; 4ZVZ A; 3THO B; 4FBK A; 5B8I A; 1IT6 A; 4DT2 A; 3DSD A; 1JK7 A; 4NZR M; 1U32 A; 3CK2 A; 3T1I A; 4H2F A; 5JJT A; 4HD0 A; 4ORC A; 4UT3 A; 4V0V A; 4B2O A; 2HYO A; 3IVD A; 1TCO A; 2QJC A; 2BQ8 X; 3H66 A; 2USH A; 4LU9 A; 4Q7F A; 4TUG A; 1FJM A; 2BCD A; 1Z2W A; 3VTI A; 5GTU A; 4O24 A; 2WDE A; 3ZIG A; 2HYP A; 3TTF A; 3IB7 A; 1KBP A; 3H61 A; 1WAR A; 3P04 A; 1MF8 A; 4FCX A; 4FBQ A; 3FLO A; 3FGA C; 4H1Y P; 4IL1 A; 2ZBM A; 4H2G A; 4YKE A; 2WDF A; 4UT2 A; 4I5N C; 3H63 A; 4H2I A; 4H2B A; 4JA9 A; 4I5L C; 3GVE A; 1T70 A; 2NYL C; 4LAC C; 3H64 A; 3VTH A; 2ZO9 B; 4MOV A; 2IE3 C; 4DSY A; 3H62 B; 5HPE A; 1OID A; 2LN3 A; 4KBP A; 5IOH A; 2CV9 A; 1Z2X A; 3HVQ A; 3DW8 C; 2AHD A; 3AUZ A; 3C5W C; 4NZT M; 3K7V C; 1V73 A; 2NXF A; 3TSU A; 2IAE C; 2WDC A; 3ZII A; 3H67 A; 1S95 A; 3ZTV A; 4EO0 A; 3QFN A; 3H60 A; 4H1S A; 3RL3 A; 2JOG A; 3JYF A; 3K7W C; 4LTY A; 1HPU A; 3QG5 C; 4J6O A; 4ORB A; 1XEZ A; 4HVZ A; 1XM7 A; 1M63 A; 3KBP A; 3RQZ A; 2NYM C; 4ZX2 A; 3C9F A; 1AUI A; 2Z1A A; 3LL8 A; 2Q8U A; 5C1V A; 3ICF A; 4G9J A; 4O5G A; 1QFC A; 5F3W A; 5DNY A; 2Z06 A; 3E0J A; 3ZIH A; 1G5B A; 4IYP C; 2QFR A; 1UF3 A; 1T71 A; 3H68 A; 1HP1 A; 3EGG A; 5INB A; 2YVT A; 3IVE A; 2A22 A; 3AV0 A; 4WWL A; 3EGH A; 3E7A A; 2ZOA A; 2R17 A; 1S70 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
