1TIGA

Translation initiation factor 3 c-terminal domain
Total Genus 27
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
88
structure length
88
Chain Sequence
INVKEVRLSPTIEEHDFNTKLRNARKFLEKGDKVKATIRFKGRAITHKEIGQRVLDRLSEACADIAVVETAPKMDGRNMFLVLAPKND
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title X-ray crystallography shows that translational initiation factor IF3 consists of two compact alpha/beta domains linked by an alpha-helix.
pubmed rcsb
molecule tags Ribosome binding factor
source organism Geobacillus stearothermophilus
molecule keywords TRANSLATION INITIATION FACTOR 3
total genus 27
structure length 88
sequence length 88
ec nomenclature
pdb deposition date 1995-08-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00707 IF3_C Translation initiation factor IF-3, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.110.10 Alpha Beta 2-Layer Sandwich Translation Initiation Factor IF3 Translation initiation factor 3 (IF-3), C-terminal domain 1tigA00
1TIGA 2IFEA 2M71A 2CRQA
chains in the Genus database with same CATH superfamily
1NJ5A 4K86A 2EK0A 2Y1BA 3TOEA 3QKBA 2LN3A 1NFHA 1VR4A 3WBMA 4FBKA 3TTFA 3IALA 4FCXA 1Y2IA 4OLFA 2CRQA 4NZRM 2IFEA 4HVCA 2M71A 4Q15A 4HD0A 2Q3VA 1H0YA 1HC7A 1XEZA 1VM0A 1NJ2A 3TSPA 1H4SA 1NH9A 4K88A 3VTIA 2A2YA 4TWAA 2L8YA 3ZIIA 4FBWA 1H4TA 3DSDA 1II7A 1DCJA 2BKYX 3LVJC 4HVZA 2LXRA 3U6YA 3T1IA 4NCXA 1JDQA 1JE3A 1JO0A 4YDQA 1H4QA 1RQ8A 4FBQA 4WI1A 1H0XA 1NFJA 4K87A 3IABA 2P9BA 1NJ1A 1TIGA 1S8EA 1Y9XA 3TTDA 1LN4A 4NZTM 2GTCA 3P04A 1PAVA 2Z7CA 4EO0A 3TSQA 2H9UA 3ZIEA 3ZIGA 3LVKB 3DSCA 3TTCA 3IABB 1NJ8A 1NJ6A 3HZ7A 3TSUA 2EH1A 4YKEA 3VTHA 3ZIHA 4Z9EA 1UDVA
chains in the Genus database with same CATH topology
1TIGA 2IFEA 2M71A 2CRQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TIG A;  2IFE A;  2M71 A;  2CRQ A; 
#chains in the Genus database with same CATH topology
 1NJ5 A;  4K86 A;  2EK0 A;  2Y1B A;  3TOE A;  3QKB A;  2LN3 A;  1NFH A;  1VR4 A;  3WBM A;  4FBK A;  3TTF A;  3IAL A;  4FCX A;  1Y2I A;  4OLF A;  2CRQ A;  4NZR M;  2IFE A;  4HVC A;  2M71 A;  4Q15 A;  4HD0 A;  2Q3V A;  1H0Y A;  1HC7 A;  1XEZ A;  1VM0 A;  1NJ2 A;  3TSP A;  1H4S A;  1NH9 A;  4K88 A;  3VTI A;  2A2Y A;  4TWA A;  2L8Y A;  3ZII A;  4FBW A;  1H4T A;  3DSD A;  1II7 A;  1DCJ A;  2BKY X;  3LVJ C;  4HVZ A;  2LXR A;  3U6Y A;  3T1I A;  4NCX A;  1JDQ A;  1JE3 A;  1JO0 A;  4YDQ A;  1H4Q A;  1RQ8 A;  4FBQ A;  4WI1 A;  1H0X A;  1NFJ A;  4K87 A;  3IAB A;  2P9B A;  1NJ1 A;  1TIG A;  1S8E A;  1Y9X A;  3TTD A;  1LN4 A;  4NZT M;  2GTC A;  3P04 A;  1PAV A;  2Z7C A;  4EO0 A;  3TSQ A;  2H9U A;  3ZIE A;  3ZIG A;  3LVK B;  3DSC A;  3TTC A;  3IAB B;  1NJ8 A;  1NJ6 A;  3HZ7 A;  3TSU A;  2EH1 A;  4YKE A;  3VTH A;  3ZIH A;  4Z9E A;  1UDV A; 
#chains in the Genus database with same CATH homology
 1TIG A;  2IFE A;  2M71 A;  2CRQ A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...