The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
44
|
sequence length |
160
|
structure length |
160
|
Chain Sequence |
MVEPGVAKLTTYASKQATDMGAIYVNSKGDRIVNESNVYTTFRNAILKQADKVAYLVMDERTWKKVYDLLILHDFTPEEIKSFFENKGKRPVFVKGSLESAAEQAGIVVDELVQTVKNYQGYVQDGHDHDFGRDPKYLHQFEGETFYIIEQRLEHHHHHH
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Northeast Structural Genomics Consortium Target LpR145J
rcsb |
| molecule keywords |
Fumarate reductase, flavoprotein subunit
|
| molecule tags |
Oxidoreductase
|
| source organism |
Lactobacillus plantarum
|
| total genus |
44
|
| structure length |
160
|
| sequence length |
160
|
| ec nomenclature |
ec
1.3.99.1: Deleted entry. |
| pdb deposition date | 2011-06-29 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Alpha-Beta Complex | Flavocytochrome C3; Chain A, domain 1 | Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain |
#chains in the Genus database with same CATH superfamily 1D4C A; 2BS3 A; 1NEK A; 4C3Y A; 3AEB A; 5KXJ A; 1JNZ A; 2WS3 A; 1CHU A; 3CIR A; 2WDQ A; 1D4D A; 1M64 A; 3P4P A; 3VR9 A; 4YTM A; 3AE7 A; 2FJE A; 4YSX A; 2B7S A; 1E39 A; 1QLB A; 3GYX A; 1KFY A; 3VRA A; 2FBW A; 3AEC A; 4YSY A; 1P2E A; 2H89 A; 3AE8 A; 4YSZ A; 4C3X A; 4YTP A; 4YTN A; 4YXD A; 1KNP A; 3AE3 A; 3AEF A; 5C2T A; 4KX6 A; 3AE4 A; 3AEA A; 1KNR A; 2WQY A; 3AED A; 1Y0P A; 1YQ4 A; 2E5V A; 3SFE A; 3AE2 A; 1D4E A; 3P4Q A; 2BS4 A; 2LFC A; 2H88 A; 1NEN A; 2B7R A; 2B76 A; 2FJB A; 1KF6 A; 4AT2 A; 3AE9 A; 3ABV A; 3AEE A; 2WDV A; 1ZP0 A; 1Q9I A; 3AE1 A; 4AT0 A; 4YT0 A; 3AE6 A; 1QO8 A; 3P4R A; 3P4S A; 2WU2 A; 1JRX A; 3SFD A; 5C3J A; 2WU5 A; 2WDR A; 1E7P A; 2ACZ A; 2FJA A; 1JRZ A; 1YQ3 A; 1QJD A; 1P2H A; 3VRB A; 3AEG A; 2WP9 A; 1JRY A; 3VR8 A; 2FJD A; 2BS2 A; 1KSU A; 1ZOY A; 1L0V A; 1JNR A; 1LJ1 A; 1KSS A; 3AE5 A; #chains in the Genus database with same CATH topology 1D4C A; 2BS3 A; 1NEK A; 4C3Y A; 3AEB A; 5KXJ A; 1JNZ A; 2WS3 A; 1CHU A; 3CIR A; 2WDQ A; 1D4D A; 1M64 A; 3P4P A; 3VR9 A; 4YTM A; 3AE7 A; 2FJE A; 4YSX A; 2B7S A; 1E39 A; 1QLB A; 3GYX A; 1KFY A; 3VRA A; 2FBW A; 3AEC A; 4YSY A; 1P2E A; 2H89 A; 3AE8 A; 4YSZ A; 4C3X A; 4YTP A; 4YTN A; 4YXD A; 1KNP A; 3AE3 A; 3AEF A; 5C2T A; 4KX6 A; 3AE4 A; 3AEA A; 1KNR A; 2WQY A; 3AED A; 1Y0P A; 1YQ4 A; 2E5V A; 3SFE A; 3AE2 A; 1D4E A; 3P4Q A; 2BS4 A; 2LFC A; 2H88 A; 1NEN A; 2B7R A; 2B76 A; 2FJB A; 1KF6 A; 4AT2 A; 3AE9 A; 3ABV A; 3AEE A; 2WDV A; 1ZP0 A; 1Q9I A; 3AE1 A; 4AT0 A; 4YT0 A; 3AE6 A; 1QO8 A; 3P4R A; 3P4S A; 2WU2 A; 1JRX A; 3SFD A; 5C3J A; 2WU5 A; 2WDR A; 1E7P A; 2ACZ A; 2FJA A; 1JRZ A; 1YQ3 A; 1QJD A; 1P2H A; 3VRB A; 3AEG A; 2WP9 A; 1JRY A; 3VR8 A; 2FJD A; 2BS2 A; 1KSU A; 1ZOY A; 1L0V A; 1JNR A; 1LJ1 A; 1KSS A; 3AE5 A; #chains in the Genus database with same CATH homology 1D4C A; 2BS3 A; 1NEK A; 4C3Y A; 3AEB A; 5KXJ A; 1JNZ A; 2WS3 A; 1CHU A; 3CIR A; 2WDQ A; 1D4D A; 1M64 A; 3P4P A; 3VR9 A; 4YTM A; 3AE7 A; 2FJE A; 4YSX A; 2B7S A; 1E39 A; 1QLB A; 3GYX A; 1KFY A; 3VRA A; 2FBW A; 3AEC A; 4YSY A; 1P2E A; 2H89 A; 3AE8 A; 4YSZ A; 4C3X A; 4YTP A; 4YTN A; 4YXD A; 1KNP A; 3AE3 A; 3AEF A; 5C2T A; 4KX6 A; 3AE4 A; 3AEA A; 1KNR A; 2WQY A; 3AED A; 1Y0P A; 1YQ4 A; 2E5V A; 3SFE A; 3AE2 A; 1D4E A; 3P4Q A; 2BS4 A; 2LFC A; 2H88 A; 1NEN A; 2B7R A; 2B76 A; 2FJB A; 1KF6 A; 4AT2 A; 3AE9 A; 3ABV A; 3AEE A; 2WDV A; 1ZP0 A; 1Q9I A; 3AE1 A; 4AT0 A; 4YT0 A; 3AE6 A; 1QO8 A; 3P4R A; 3P4S A; 2WU2 A; 1JRX A; 3SFD A; 5C3J A; 2WU5 A; 2WDR A; 1E7P A; 2ACZ A; 2FJA A; 1JRZ A; 1YQ3 A; 1QJD A; 1P2H A; 3VRB A; 3AEG A; 2WP9 A; 1JRY A; 3VR8 A; 2FJD A; 2BS2 A; 1KSU A; 1ZOY A; 1L0V A; 1JNR A; 1LJ1 A; 1KSS A; 3AE5 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
