4Z9EA

Alba from thermoplasma volcanium
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
85
structure length
85
Chain Sequence
NIIFVGKKPTMNYVLAVVTQFNNNANKIIIKARGKTISKAVDVAEITRHKFIPDAKYEEIRLDTETLQGERGSSNVSSIEITLSR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Alba from Thermoplasma volcanium belongs to alpha-NAT's: An insight into the structural aspects of Tv Alba and its acetylation by Tv Ard1.
pubmed doi rcsb
molecule tags Dna binding protein
source organism Thermoplasma volcanium (strain atcc 51530 / dsm 4299 / jcm 9571 / nbrc 15438 / g
molecule keywords DNA/RNA-binding protein Alba
total genus 24
structure length 85
sequence length 85
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2015-04-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01918 Alba Alba
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.110.20 Alpha Beta 2-Layer Sandwich Translation Initiation Factor IF3 Alba-like domain 4z9eA00
2Z7CA 1UDVA 1NFHA 2A2YA 2H9UA 2EH1A 2EK0A 3WBMA 2BKYX 2Q3VA 1Y9XA 3U6YA 3IABB 3TOEA 1H0YA 1NH9A 3IABA 1VM0A 1NFJA 1H0XA 4Z9EA
chains in the Genus database with same CATH superfamily
4K86A 2Z7CA 3IALA 4Q15A 2M71A 4HVCA 2A2YA 1H4TA 2H9UA 1HC7A 4TWAA 1RQ8A 3DSCA 4YKEA 2BKYX 4HVZA 1Y9XA 3U6YA 4K88A 1H4SA 1NH9A 2L8YA 4EO0A 2IFEA 1PAVA 3ZIIA 3QKBA 4FBQA 3TSPA 1Y2IA 1JE3A 1S8EA 4YDQA 1UDVA 1NFHA 1NJ2A 2Y1BA 4OLFA 4NZTM 2EH1A 3VTHA 1NJ6A 3LVKB 4WI1A 3IABB 1NJ5A 1DCJA 4NCXA 1XEZA 3VTIA 4FBWA 1JO0A 3LVJC 4NZRM 1H4QA 1II7A 3TTCA 3ZIEA 2EK0A 2Q3VA 3TOEA 3ZIGA 3IABA 1VM0A 3TSUA 4FCXA 1H0XA 4HD0A 4FBKA 2LN3A 1LN4A 4K87A 3ZIHA 1JDQA 3TTFA 3P04A 3T1IA 3HZ7A 3WBMA 3TSQA 1NJ1A 2LXRA 2P9BA 1NJ8A 1TIGA 1H0YA 2GTCA 1NFJA 3TTDA 1VR4A 4Z9EA 2CRQA 3DSDA
chains in the Genus database with same CATH topology
2Z7CA 1UDVA 1NFHA 2A2YA 2H9UA 2EH1A 2EK0A 3WBMA 2BKYX 2Q3VA 1Y9XA 3U6YA 3IABB 3TOEA 1H0YA 1NH9A 3IABA 1VM0A 1NFJA 1H0XA 4Z9EA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Z7C A;  1UDV A;  1NFH A;  2A2Y A;  2H9U A;  2EH1 A;  2EK0 A;  3WBM A;  2BKY X;  2Q3V A;  1Y9X A;  3U6Y A;  3IAB B;  3TOE A;  1H0Y A;  1NH9 A;  3IAB A;  1VM0 A;  1NFJ A;  1H0X A;  4Z9E A; 
#chains in the Genus database with same CATH topology
 4K86 A;  2Z7C A;  3IAL A;  4Q15 A;  2M71 A;  4HVC A;  2A2Y A;  1H4T A;  2H9U A;  1HC7 A;  4TWA A;  1RQ8 A;  3DSC A;  4YKE A;  2BKY X;  4HVZ A;  1Y9X A;  3U6Y A;  4K88 A;  1H4S A;  1NH9 A;  2L8Y A;  4EO0 A;  2IFE A;  1PAV A;  3ZII A;  3QKB A;  4FBQ A;  3TSP A;  1Y2I A;  1JE3 A;  1S8E A;  4YDQ A;  1UDV A;  1NFH A;  1NJ2 A;  2Y1B A;  4OLF A;  4NZT M;  2EH1 A;  3VTH A;  1NJ6 A;  3LVK B;  4WI1 A;  3IAB B;  1NJ5 A;  1DCJ A;  4NCX A;  1XEZ A;  3VTI A;  4FBW A;  1JO0 A;  3LVJ C;  4NZR M;  1H4Q A;  1II7 A;  3TTC A;  3ZIE A;  2EK0 A;  2Q3V A;  3TOE A;  3ZIG A;  3IAB A;  1VM0 A;  3TSU A;  4FCX A;  1H0X A;  4HD0 A;  4FBK A;  2LN3 A;  1LN4 A;  4K87 A;  3ZIH A;  1JDQ A;  3TTF A;  3P04 A;  3T1I A;  3HZ7 A;  3WBM A;  3TSQ A;  1NJ1 A;  2LXR A;  2P9B A;  1NJ8 A;  1TIG A;  1H0Y A;  2GTC A;  1NFJ A;  3TTD A;  1VR4 A;  4Z9E A;  2CRQ A;  3DSD A; 
#chains in the Genus database with same CATH homology
 2Z7C A;  1UDV A;  1NFH A;  2A2Y A;  2H9U A;  2EH1 A;  2EK0 A;  3WBM A;  2BKY X;  2Q3V A;  1Y9X A;  3U6Y A;  3IAB B;  3TOE A;  1H0Y A;  1NH9 A;  3IAB A;  1VM0 A;  1NFJ A;  1H0X A;  4Z9E A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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