The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
25
|
sequence length |
72
|
structure length |
72
|
Chain Sequence |
TSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQ
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Viral protein
|
| molecule keywords |
HIV-1 CAPSID
|
| publication title |
Structures of the HIV-1 capsid protein dimerization domain at 2.6 A resolution.
pubmed doi rcsb |
| source organism |
Human immunodeficiency virus 1
|
| total genus |
25
|
| structure length |
72
|
| sequence length |
72
|
| ec nomenclature |
ec
2.7.7.49: RNA-directed DNA polymerase. |
| pdb deposition date | 1998-02-10 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A | Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A |
#chains in the Genus database with same CATH superfamily 2ONT A; 5HGM A; 3G29 A; 5DCK A; 4U0B A; 4XRQ A; 2M8N A; 3DS3 A; 4COP A; 1EIA A; 4U0E A; 4XRO A; 2M8P A; 1QRJ A; 4XFZ A; 3DPH A; 3G1I A; 3P05 A; 1E6J P; 3VRL C; 1AUM A; 3MGE A; 4M0I A; 4WYM A; 2XXM A; 5HGL A; 3H4E A; 4U0A A; 4XFX A; 4XFY A; 4PH0 A; 2JYG A; 2M8L A; 3G26 A; 1A8O A; 1D1D A; 2BUO A; 3DTJ A; 3LRY A; 5I4T G; 2XT1 A; 4IPY A; 3G0V A; 4PH1 A; 2JYL A; 4U0C A; 4COC A; 3DS1 A; 4U0F A; 2L6E A; 3H47 A; 1BAJ A; 1A43 A; 3DS2 A; 2KOD A; 1EOQ A; 3G1G A; 5HGO A; 3DS0 A; 3DS4 A; 3G21 A; 2EIA A; 4QNB A; 3NTE A; 4U0D A; 2JO0 A; 3DS5 A; 5HGN A; 5JPA A; 2LF4 A; 2XV6 A; 3G28 A; #chains in the Genus database with same CATH topology 1YHQ P; 3CCR P; 1K73 Q; 2AFE A; 2LKI A; 2X2B A; 2OTL P; 2VLN A; 2VLQ A; 2MY5 A; 1M6E X; 3RG2 A; 1M74 A; 3GZM A; 4GR6 A; 2AF8 A; 2PEN A; 3DS5 A; 3RG6 C; 2VLP A; 2JAZ A; 3G28 A; 2OTJ P; 2K0D X; 2FAE A; 1Q86 Q; 4XFZ A; 3E2D A; 2VSQ A; 1MZ8 A; 4XFX A; 4BPH A; 4BPG A; 1F80 D; 2BUO A; 4CA3 A; 1L0I A; 2JU1 A; 3CCQ P; 1KC8 Q; 1EOQ A; 2KOD A; 2NO8 A; 3CXC O; 4MRT C; 2FVE A; 3DS4 A; 2K0X A; 1N8R Q; 3G4S P; 2KR5 A; 2KGA A; 2FVA A; 1K9M Q; 3GZL A; 2JGP A; 4F37 A; 2EFJ A; 2E1M A; 4R0M A; 5HGL A; 2KOP A; 3EJB A; 1YIJ P; 1K8A Q; 1VQ6 P; 1EMV A; 1GXG A; 3G0V A; 2LML A; 2MD9 A; 5KP7 B; 2L22 A; 2MVU A; 1CEI A; 1JJ2 O; 1KQS O; 1Q82 Q; 2JQ4 A; 1Q81 Q; 1ZMB A; 2KGD A; 4PWV B; 2KW2 A; 1VHN A; 1VQ5 P; 2XZ1 C; 3NY7 B; 2OAR A; 2K2Q A; 3DS1 A; 3EJD A; 2CWO A; 4QKO A; 5BS1 A; 3NTE A; 4GR2 A; 2KOQ A; 2LF4 A; 2K5X A; 5DCK A; 2Z45 A; 5CZD B; 2CQ8 A; 2N50 A; 3MGE A; 1T8K A; 4M0I A; 2LIU A; 3WBH A; 4HKG A; 2JB0 A; 1K30 A; 4PH1 A; 1DNY A; 3DS2 A; 5KP8 B; 2EHS A; 2EIA A; 2MF4 A; 1OR5 A; 2ONT A; 3DS3 A; 2JU2 A; 1YJN P; 2GZF A; 3HZQ A; 1YI2 P; 7CEI A; 2LL8 A; 2DGY A; 1FR2 A; 2QNW A; 2KOO A; 3CCM P; 1VQ7 P; 1HY8 A; 5JPA A; 2PEM A; 5EJD A; 4U0B A; 2MR7 A; 2M8N A; 1GXH A; 1IMQ A; 4PH0 A; 5KP6 B; 2FQ2 A; 2N5I A; 3CCE P; 1AYI A; 3GKL C; 3CCV P; 1IMP A; 1L0H A; 4DG9 A; 3G21 A; 4IZ6 A; 1QVF O; 3G29 A; 1QRJ A; 3G1I A; 2JBG A; 4XFY A; 2LPK A; 3B5I A; 3I56 P; 4IPY A; 3LMO A; 4U0C A; 3H47 A; 2WPT A; 1KLP A; 2EHT A; 2JO0 A; 3CME P; 5BS2 A; 3HYB A; 4XRQ A; 4UHP B; 2GDX A; 2FVF A; 3G26 A; 1Q7Y Q; 1X3O A; 3U43 A; 2JYL A; 1M1K Q; 2PEI A; 2PNG A; 2Z46 A; 2AFD A; 1VKU A; 2PEQ A; 2DNW A; 2FHS C; 2KG9 A; 4U0E A; 1ACP A; 2GZI A; 2CGQ A; 2XXM A; 3LRY A; 5I4T G; 2P9X A; 3CC7 P; 2AVA A; 1M6N A; 2L0Q A; 2K92 A; 2LTE A; 1ZNV A; 3G1G A; 1VQN P; 2XZ0 D; 4U0D A; 4H2W C; 2QEX P; 1YJW P; 1YIT P; 2L9F A; 3CMA P; 5F2N A; 1VQO P; 2PEK A; 2EG5 A; 2JYG A; 3CC2 P; 2M8L A; 1A8O A; 1YJ9 P; 2GDW A; 4COC A; 4H2Y C; 2KGE A; 2QA4 P; 2CG5 B; 3CCJ P; 1UNK A; 3CD6 P; 2GZG A; 5HVC A; 1DV5 A; 2M8P A; 1E6J P; 2KG6 A; 2M5R A; 1W2B O; 2BHV A; 2LIW A; 2FAC A; 2XT1 A; 2L6E A; 5HGO A; 1VQP P; 1NQ4 A; 2ROQ A; 2MR8 A; 3CC4 P; 5HGM A; 3OW2 O; 5HV8 A; 1NJI Q; 1RNI A; 1EIA A; 2KOR A; 2N5H A; 1VQ8 P; 1E0H A; 3DPH A; 3VRL C; 3G71 P; 3H0D A; 1VQ9 P; 2PY8 A; 2N98 A; 1RO0 A; 1BAJ A; 3DS0 A; 3CCU P; 2PEJ A; 1KD1 Q; 2FQ0 A; 2XV6 A; 2FAD A; 2GZE A; 4COP A; 2MVV A; 2KWL A; 3M1M A; 3P05 A; 1AUM A; 2L4B A; 4PXH B; 2K94 A; 3H4E A; 2K0Y A; 2GYK A; 5F2K A; 1QVG O; 3I55 P; 1GPJ A; 4U0F A; 1AF8 A; 4BPF A; 2VLO A; 1A43 A; 4NEO A; 2KG8 A; 2N6Z A; 2KOS A; 4QNB A; 1S72 P; 5EW5 E; 1M90 Q; 3CCL P; 1BXI A; 3EJE A; 1UJZ A; 2GDY A; 2N6Y A; 1D1D A; 2GZJ A; 2CNR A; 2Z44 A; 2K93 A; 2PEO A; 3B4Q A; 1VQL P; 1HQB A; 2LOL A; 5HGN A; 1Z6M A; 3CE7 A; 1IUQ A; 3GJN A; 3CCS P; 4XRO A; 4WYM A; 3Q20 A; 4U0A A; 1VQM P; 2KGC A; 3DTJ A; 4H2X C; 3G6E P; 1VQ4 P; 1VQK P; 5F2O A; 2FQ1 A; 2ERH A; 3CPW O; 1RO2 A; #chains in the Genus database with same CATH homology 5HGM A; 1YHQ P; 3OW2 O; 3HYB A; 5DCK A; 4XRQ A; 1RNI A; 1NJI Q; 2Z45 A; 3CCR P; 1EIA A; 1K73 Q; 1VQ8 P; 3DPH A; 3VRL C; 3MGE A; 4M0I A; 2OTL P; 3WBH A; 3H0D A; 3G71 P; 1Q7Y Q; 3G26 A; 1VQ9 P; 2PY8 A; 1RO0 A; 1K30 A; 4PH1 A; 2JYL A; 1M6E X; 1M74 A; 1M1K Q; 2PEI A; 2Z46 A; 1BAJ A; 3DS2 A; 3DS0 A; 4GR6 A; 3CCU P; 2EIA A; 2PEJ A; 1KD1 Q; 2PEN A; 2PEQ A; 3DS5 A; 3RG6 C; 2XV6 A; 3G28 A; 2OTJ P; 2ONT A; 1Q86 Q; 4COP A; 3DS3 A; 4U0E A; 3M1M A; 4XFZ A; 3P05 A; 3E2D A; 1AUM A; 2XXM A; 3H4E A; 4XFX A; 1YJN P; 2BUO A; 3LRY A; 5F2K A; 5I4T G; 1QVG O; 2P9X A; 3CC7 P; 3HZQ A; 1YI2 P; 3I55 P; 1M6N A; 3CCQ P; 2DGY A; 4U0F A; 1KC8 Q; 1A43 A; 1EOQ A; 2KOD A; 3G1G A; 3CXC O; 1VQN P; 3DS4 A; 3CCM P; 1VQ7 P; 4QNB A; 1S72 P; 1N8R Q; 4U0D A; 3G4S P; 5JPA A; 2QEX P; 1M90 Q; 2PEM A; 1YJW P; 1K9M Q; 3CCL P; 1YIT P; 4U0B A; 2M8N A; 3CMA P; 5F2N A; 1VQO P; 2EFJ A; 2E1M A; 2PEK A; 5HGL A; 4PH0 A; 2EG5 A; 2JYG A; 3CC2 P; 2M8L A; 1YIJ P; 1A8O A; 1D1D A; 1YJ9 P; 1K8A Q; 3CCE P; 1VQ6 P; 2Z44 A; 3G0V A; 4COC A; 3CCV P; 2PEO A; 2QA4 P; 1VQL P; 3G21 A; 5HGN A; 3CCJ P; 1QVF O; 1JJ2 O; 3G29 A; 1KQS O; 1Q82 Q; 3CD6 P; 1IUQ A; 3CCS P; 4XRO A; 2M8P A; 1QRJ A; 3G1I A; 1E6J P; 1Q81 Q; 1ZMB A; 4WYM A; 3Q20 A; 4U0A A; 4XFY A; 1W2B O; 2BHV A; 3B5I A; 3I56 P; 1VQM P; 1VQ5 P; 3DTJ A; 2OAR A; 2XT1 A; 4IPY A; 3G6E P; 1VQ4 P; 4U0C A; 3DS1 A; 1VQK P; 5F2O A; 2L6E A; 3H47 A; 2CWO A; 5HGO A; 1VQP P; 5BS1 A; 3CPW O; 3NTE A; 4GR2 A; 2JO0 A; 3CME P; 3CC4 P; 1RO2 A; 2LF4 A; 5BS2 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
