1SI7A

Structure of e. coli trna psi 13 pseudouridine synthase trud
Total Genus 106
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
106
sequence length
340
structure length
340
Chain Sequence
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords tRNA pseudouridine synthase D
publication title Crystal structure of TruD, a novel pseudouridine synthase with a new protein fold
pubmed doi rcsb
source organism Escherichia coli
molecule tags Lyase
total genus 106
structure length 340
sequence length 340
ec nomenclature ec 5.4.99.27: tRNA pseudouridine(13) synthase.
pdb deposition date 2004-02-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01142 TruD tRNA pseudouridine synthase D (TruD)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.2340.10 Alpha Beta 2-Layer Sandwich Pseudouridine synthase tRNA pseudouridine synthase TruD 1si7A02
3.30.2350.20 Alpha Beta 2-Layer Sandwich Pseudouridine synthase Pseudouridine synthase 1si7A01
1SZWA 1SB7A 1SI7A 1Z2ZA
chains in the Genus database with same CATH superfamily
1PRZA 3HAXA 3UAIA 2I82A 1SB7A 2RFKA 3MQKA 3LWVA 1R3EA 1XPIA 1ZE1A 1QYUA 1ZL3A 3HJYA 4LGTA 2HVYA 1SI7A 3U28A 1V9KA 1KSKA 4LABA 1SGVA 3LWPA 1K8WA 1R3FA 2AB4A 1V9FA 1KSLA 1ZE2A 1SZWA 3LWRA 3HJWA 2APOA 3LWOA 2EY4A 3DH3A 3LWQA 2AUSA 1KSVA 2ISTA 1Z2ZA
chains in the Genus database with same CATH topology
1PRZA 3HAXA 3UAIA 2I82A 1SB7A 2RFKA 3MQKA 3LWVA 1R3EA 1XPIA 1ZE1A 1QYUA 1ZL3A 3HJYA 4LGTA 2HVYA 1SI7A 3U28A 1V9KA 1KSKA 4LABA 1SGVA 3LWPA 1K8WA 1R3FA 2AB4A 1V9FA 1KSLA 1ZE2A 1SZWA 3LWRA 3HJWA 2APOA 3LWOA 2EY4A 3DH3A 3LWQA 2AUSA 1KSVA 2ISTA 1Z2ZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1SZW A;  1SB7 A;  1SI7 A;  1Z2Z A; 
#chains in the Genus database with same CATH topology
 1PRZ A;  3HAX A;  3UAI A;  2I82 A;  1SB7 A;  2RFK A;  3MQK A;  3LWV A;  1R3E A;  1XPI A;  1ZE1 A;  1QYU A;  1ZL3 A;  3HJY A;  4LGT A;  2HVY A;  1SI7 A;  3U28 A;  1V9K A;  1KSK A;  4LAB A;  1SGV A;  3LWP A;  1K8W A;  1R3F A;  2AB4 A;  1V9F A;  1KSL A;  1ZE2 A;  1SZW A;  3LWR A;  3HJW A;  2APO A;  3LWO A;  2EY4 A;  3DH3 A;  3LWQ A;  2AUS A;  1KSV A;  2IST A;  1Z2Z A; 
#chains in the Genus database with same CATH homology
 1PRZ A;  3HAX A;  3UAI A;  2I82 A;  1SB7 A;  2RFK A;  3MQK A;  3LWV A;  1R3E A;  1XPI A;  1ZE1 A;  1QYU A;  1ZL3 A;  3HJY A;  4LGT A;  2HVY A;  1SI7 A;  3U28 A;  1V9K A;  1KSK A;  4LAB A;  1SGV A;  3LWP A;  1K8W A;  1R3F A;  2AB4 A;  1V9F A;  1KSL A;  1ZE2 A;  1SZW A;  3LWR A;  3HJW A;  2APO A;  3LWO A;  2EY4 A;  3DH3 A;  3LWQ A;  2AUS A;  1KSV A;  2IST A;  1Z2Z A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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