The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
92
|
sequence length |
315
|
structure length |
304
|
Chain Sequence |
ELIVKEEVETNWDYGCNPYERKIEDLIKYGVVVVDKPRGPTSHEVSTWVKKILNLDKAGHGGTLDPKVTGVLPVALERATKTIPMWHIPPKEYVCLMHLHRDASEEDILRVFKEFTGRIYQRRIRKIHELELLDKDGKDVLFRVKCQSGTYIRKLCEDIGEALGTSAHMQELRRTKSGCFEEKDAVYLQDLLDAYVFWKEDGDEEELRRVIKPMEYGLRHLKKVVVKDSAVDAICHGADVYVRGIAKLSKGIGKGETVLVETLKGEAVAVGKALMNTKEILNADKGVAVDVERVYMDRGTYPRM
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
publication title |
The Cbf5-Nop10 complex is a molecular bracket that organizes box H/ACA RNPs.
pubmed doi rcsb |
molecule tags |
Isomerase/rna binding protein
|
source organism |
Methanocaldococcus jannaschii
|
molecule keywords |
Probable tRNA pseudouridine synthase B
|
total genus |
92
|
structure length |
304
|
sequence length |
315
|
ec nomenclature |
ec
5.4.99.25: tRNA pseudouridine(55) synthase. |
pdb deposition date | 2005-08-16 |
chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
---|---|---|---|
A | PF01472 | PUA | PUA domain |
A | PF01509 | TruB_N | TruB family pseudouridylate synthase (N terminal domain) |
A | PF08068 | DKCLD | DKCLD (NUC011) domain |
A | PF16198 | TruB_C_2 | tRNA pseudouridylate synthase B C-terminal domain |
cath code
| Class | Architecture | Topology | Homology | Domain |
---|---|---|---|---|---|
Mainly Beta | Roll | Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 | Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 | ||
Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Alpha-Beta Plaits | ||
Alpha Beta | 2-Layer Sandwich | Pseudouridine synthase | Pseudouridine synthase |