3LWRA

Structure of h/aca rnp bound to a substrate rna containing 4su
Total Genus 96
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
96
sequence length
327
structure length
317
Chain Sequence
RILPADIKREVLIKDENAETNPDWGFPPEKRPIEMHIQFGVINLDKPPGPTSHEVVAWIKKILNLEKAGHGGTLDPKVSGVLPVALEKATRVVQALLPAGKEYVALMHLHGDVPEDKIIQVMKEFEGEIIQRLRTRKVYYIEVLEIEGRDVLFRVGVEAGTYIRSLIHHIGLALGVGAHMSELRRTRSGPFKEDETLITLHDLVDYYYFWKEDGIEEYFRKAIQPMEKAVEHLPKVWIKDSAVAAVTHGADLAVPGIAKLHAGIKRGDLVAIMTLKDELVALGKAMMTSQEMLEKTKGIAVDVEKVFMPRDWYPKLW
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Isomerase/rna binding protein/rna
molecule keywords Pseudouridine synthase Cbf5
publication title Functional and Structural Impact of Target Uridine Substitutions on the H/ACA Ribonucleoprotein Particle Pseudouridine Synthase .
pubmed doi rcsb
source organism Pyrococcus furiosus
total genus 96
structure length 317
sequence length 327
ec nomenclature ec 5.4.99.25: tRNA pseudouridine(55) synthase.
pdb deposition date 2010-02-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01472 PUA PUA domain
A PF01509 TruB_N TruB family pseudouridylate synthase (N terminal domain)
A PF08068 DKCLD DKCLD (NUC011) domain
A PF16198 TruB_C_2 tRNA pseudouridylate synthase B C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.130.70 Mainly Beta Roll Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 3lwrA01
3.30.2350.10 Alpha Beta 2-Layer Sandwich Pseudouridine synthase Pseudouridine synthase 3lwrA02
3ZV0C 1KSVA 1XPIA 1KSLA 2HVYA 1QYUA 1R3EA 1V9KA 1K8WA 3HJYA 3U28A 2EY4A 3UAIA 3HAXA 1SGVA 1KSKA 3LWPA 1ZE2A 1V9FA 3LWQA 2I82A 3DH3A 3LWVA 2AB4A 1ZE1A 2AUSA 1PRZA 3LWOA 4LGTA 3MQKA 1ZL3A 2RFKA 4LABA 1R3FA 2APOA 2ISTA 3HJWA 3LWRA
chains in the Genus database with same CATH superfamily
3ZV0C 1KSLA 2Z0TA 1S04A 1QYUA 1IT7A 1XNEA 1SB7A 3M6VA 3UAIA 1SGVA 2CX0A 2CX1A 1IT8A 1UOYA 3DH3A 3LWVA 1ZL3A 2ANEA 2CWWA 2RFKA 2DP9A 2E5OA 3M65A 3LWRA 2AS0A 3C0KA 4CI2B 3M4XA 2Q07A 3VSEA 3HJYA 1T5YA 4Q1TA 1V9FA 1IQ8A 3M6XA 1ZE1A 3LWOA 2J5TA 2B78A 1WXWA 1R3FA 2APOA 4TZ4C 3HJWA 3M6WA 1KSVA 1SQWA 3D79A 2HVYA 1R3EA 3LDFA 4CI1B 3LWPA 1ZE2A 2I82A 2AUSA 1WXXA 4LGTA 1TE7A 1SZWA 4CI3B 1J2BA 3U28A 1Z2ZA 1XPIA 2P38A 4DMGA 3IUWA 1V9KA 1ZS7A 1K8WA 2J5VA 2EY4A 3HAXA 1KSKA 2KKUA 3LWQA 2AB4A 1Q7HA 1PRZA 3MQKA 1WK2A 2FRXA 4LABA 3M6UA 3LJCA 1SI7A 2ISTA 1ZBOA
chains in the Genus database with same CATH topology
3ZV0C 3M6WA 1KSVA 1Z2ZA 1XPIA 1KSLA 3LWRA 3M4XA 2HVYA 1QYUA 1R3EA 1V9KA 1K8WA 1SB7A 3HJYA 3M6VA 2EY4A 3UAIA 3HAXA 1SGVA 1KSKA 3LWPA 1ZE2A 1V9FA 1UOYA 3LWQA 2I82A 3M6XA 3DH3A 3LWVA 2AB4A 1ZE1A 2AUSA 1PRZA 3LWOA 4LGTA 3MQKA 2FRXA 1ZL3A 2RFKA 1SZWA 3M6UA 4LABA 1R3FA 2APOA 1SI7A 2ISTA 3HJWA 3U28A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ZV0 C;  1KSV A;  1XPI A;  1KSL A;  2HVY A;  1QYU A;  1R3E A;  1V9K A;  1K8W A;  3HJY A;  3U28 A;  2EY4 A;  3UAI A;  3HAX A;  1SGV A;  1KSK A;  3LWP A;  1ZE2 A;  1V9F A;  3LWQ A;  2I82 A;  3DH3 A;  3LWV A;  2AB4 A;  1ZE1 A;  2AUS A;  1PRZ A;  3LWO A;  4LGT A;  3MQK A;  1ZL3 A;  2RFK A;  4LAB A;  1R3F A;  2APO A;  2IST A;  3HJW A;  3LWR A; 
#chains in the Genus database with same CATH topology
 3ZV0 C;  1KSL A;  2Z0T A;  1S04 A;  1QYU A;  1IT7 A;  1XNE A;  1SB7 A;  3M6V A;  3UAI A;  1SGV A;  2CX0 A;  2CX1 A;  1IT8 A;  1UOY A;  3DH3 A;  3LWV A;  1ZL3 A;  2ANE A;  2CWW A;  2RFK A;  2DP9 A;  2E5O A;  3M65 A;  3LWR A;  2AS0 A;  3C0K A;  4CI2 B;  3M4X A;  2Q07 A;  3VSE A;  3HJY A;  1T5Y A;  4Q1T A;  1V9F A;  1IQ8 A;  3M6X A;  1ZE1 A;  3LWO A;  2J5T A;  2B78 A;  1WXW A;  1R3F A;  2APO A;  4TZ4 C;  3HJW A;  3M6W A;  1KSV A;  1SQW A;  3D79 A;  2HVY A;  1R3E A;  3LDF A;  4CI1 B;  3LWP A;  1ZE2 A;  2I82 A;  2AUS A;  1WXX A;  4LGT A;  1TE7 A;  1SZW A;  4CI3 B;  1J2B A;  3U28 A;  1Z2Z A;  1XPI A;  2P38 A;  4DMG A;  3IUW A;  1V9K A;  1ZS7 A;  1K8W A;  2J5V A;  2EY4 A;  3HAX A;  1KSK A;  2KKU A;  3LWQ A;  2AB4 A;  1Q7H A;  1PRZ A;  3MQK A;  1WK2 A;  2FRX A;  4LAB A;  3M6U A;  3LJC A;  1SI7 A;  2IST A;  1ZBO A; 
#chains in the Genus database with same CATH homology
 3ZV0 C;  3M6W A;  1KSV A;  1Z2Z A;  1XPI A;  1KSL A;  3LWR A;  3M4X A;  2HVY A;  1QYU A;  1R3E A;  1V9K A;  1K8W A;  1SB7 A;  3HJY A;  3M6V A;  2EY4 A;  3UAI A;  3HAX A;  1SGV A;  1KSK A;  3LWP A;  1ZE2 A;  1V9F A;  1UOY A;  3LWQ A;  2I82 A;  3M6X A;  3DH3 A;  3LWV A;  2AB4 A;  1ZE1 A;  2AUS A;  1PRZ A;  3LWO A;  4LGT A;  3MQK A;  2FRX A;  1ZL3 A;  2RFK A;  1SZW A;  3M6U A;  4LAB A;  1R3F A;  2APO A;  1SI7 A;  2IST A;  3HJW A;  3U28 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...