2EY4A

Crystal structure of a cbf5-nop10-gar1 complex
Total Genus 91
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
91
sequence length
329
structure length
329
Chain Sequence
EVRRILPADIKREVLIKDENAETNPDWGFPPEKRPIEMHIQFGVINLDKPPGPTSHEVVAWIKKILNLEKAGHGGTLDPKVSGVLPVALEKATRVVQALLPAGKEYVALMHLHGDVPEDKIIQVMKEFEGEIIQRPPLRSAVKRRLRTRKVYYIEVLEIEGRDVLFRVGVEAGTYIRSLIHHIGLALGVGAHMSELRRTRSGPFKEDETLITLHDLVDYYYFWKEDGIEEYFRKAIQPMEKAVEHLPKVWIKDSAVAAVTHGADLAVPGIAKLHAGIKRGDLVAIMTLKDELVALGKAMMTSQEMLEKTKGIAVDVEKVFMPRDWYPKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Isomerase/biosynthetic protein
molecule keywords Probable tRNA pseudouridine synthase B
publication title Crystal structure of a Cbf5-Nop10-Gar1 complex and implications in RNA-guided pseudouridylation and dyskeratosis congenita.
pubmed doi rcsb
source organism Pyrococcus furiosus
total genus 91
structure length 329
sequence length 329
chains with identical sequence B
ec nomenclature ec 5.4.99.25: tRNA pseudouridine(55) synthase.
pdb deposition date 2005-11-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01472 PUA PUA domain
A PF01509 TruB_N TruB family pseudouridylate synthase (N terminal domain)
A PF08068 DKCLD DKCLD (NUC011) domain
A PF16198 TruB_C_2 tRNA pseudouridylate synthase B C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.130.70 Mainly Beta Roll Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 2ey4A01
3.30.2350.10 Alpha Beta 2-Layer Sandwich Pseudouridine synthase Pseudouridine synthase 2ey4A02
1SGVA 2ISTA 2AUSA 3LWPA 1KSLA 4LABA 1KSKA 2HVYA 2AB4A 1KSVA 3LWVA 2EY4A 1QYUA 3U28A 3UAIA 1K8WA 1R3EA 2APOA 1ZL3A 3DH3A 3LWRA 3HAXA 2RFKA 1PRZA 1XPIA 4LGTA 3HJYA 1R3FA 1ZE1A 3LWOA 3LWQA 1V9KA 1V9FA 2I82A 3ZV0C 3HJWA 3MQKA 1ZE2A
chains in the Genus database with same CATH superfamily
3D79A 4TZ4C 2ISTA 2AUSA 1T5YA 3LWPA 1SQWA 2B78A 2AB4A 2HVYA 1S04A 2Q07A 3UAIA 2CX0A 2Z0TA 1XPIA 1Q7HA 1WK2A 1IQ8A 4CI1B 2I82A 1WXWA 1IT8A 1SZWA 1IT7A 1SB7A 4LABA 3M6VA 1KSVA 2E5OA 2EY4A 1QYUA 1TE7A 3U28A 1R3EA 1ZL3A 3LWRA 3HAXA 2FRXA 3HJYA 1R3FA 3LWOA 1SI7A 3M6WA 1Z2ZA 3ZV0C 2KKUA 3HJWA 2ANEA 1SGVA 2P38A 2J5TA 2AS0A 2J5VA 3LWVA 1XNEA 3M6UA 3IUWA 1K8WA 2APOA 2CWWA 3M4XA 3M6XA 1WXXA 1V9FA 2DP9A 3C0KA 3MQKA 3LDFA 1KSLA 4CI2B 1KSKA 1UOYA 2CX1A 3LJCA 1ZBOA 4DMGA 3DH3A 2RFKA 1PRZA 4LGTA 1ZE1A 3LWQA 1V9KA 4Q1TA 1ZS7A 4CI3B 3M65A 1J2BA 3VSEA 1ZE2A
chains in the Genus database with same CATH topology
1SGVA 2ISTA 1SZWA 2AUSA 1SB7A 3LWPA 1KSLA 4LABA 1KSKA 3M6VA 2HVYA 1UOYA 2AB4A 1KSVA 3LWVA 2EY4A 1QYUA 3M6UA 3U28A 3UAIA 1K8WA 1R3EA 2APOA 1ZL3A 3DH3A 3LWRA 3HAXA 2RFKA 1PRZA 3M4XA 2FRXA 1XPIA 4LGTA 3M6XA 3HJYA 1R3FA 1ZE1A 3LWOA 3LWQA 1V9KA 1SI7A 3M6WA 1V9FA 2I82A 1Z2ZA 3ZV0C 3HJWA 3MQKA 1ZE2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1SGV A;  2IST A;  2AUS A;  3LWP A;  1KSL A;  4LAB A;  1KSK A;  2HVY A;  2AB4 A;  1KSV A;  3LWV A;  2EY4 A;  1QYU A;  3U28 A;  3UAI A;  1K8W A;  1R3E A;  2APO A;  1ZL3 A;  3DH3 A;  3LWR A;  3HAX A;  2RFK A;  1PRZ A;  1XPI A;  4LGT A;  3HJY A;  1R3F A;  1ZE1 A;  3LWO A;  3LWQ A;  1V9K A;  1V9F A;  2I82 A;  3ZV0 C;  3HJW A;  3MQK A;  1ZE2 A; 
#chains in the Genus database with same CATH topology
 3D79 A;  4TZ4 C;  2IST A;  2AUS A;  1T5Y A;  3LWP A;  1SQW A;  2B78 A;  2AB4 A;  2HVY A;  1S04 A;  2Q07 A;  3UAI A;  2CX0 A;  2Z0T A;  1XPI A;  1Q7H A;  1WK2 A;  1IQ8 A;  4CI1 B;  2I82 A;  1WXW A;  1IT8 A;  1SZW A;  1IT7 A;  1SB7 A;  4LAB A;  3M6V A;  1KSV A;  2E5O A;  2EY4 A;  1QYU A;  1TE7 A;  3U28 A;  1R3E A;  1ZL3 A;  3LWR A;  3HAX A;  2FRX A;  3HJY A;  1R3F A;  3LWO A;  1SI7 A;  3M6W A;  1Z2Z A;  3ZV0 C;  2KKU A;  3HJW A;  2ANE A;  1SGV A;  2P38 A;  2J5T A;  2AS0 A;  2J5V A;  3LWV A;  1XNE A;  3M6U A;  3IUW A;  1K8W A;  2APO A;  2CWW A;  3M4X A;  3M6X A;  1WXX A;  1V9F A;  2DP9 A;  3C0K A;  3MQK A;  3LDF A;  1KSL A;  4CI2 B;  1KSK A;  1UOY A;  2CX1 A;  3LJC A;  1ZBO A;  4DMG A;  3DH3 A;  2RFK A;  1PRZ A;  4LGT A;  1ZE1 A;  3LWQ A;  1V9K A;  4Q1T A;  1ZS7 A;  4CI3 B;  3M65 A;  1J2B A;  3VSE A;  1ZE2 A; 
#chains in the Genus database with same CATH homology
 1SGV A;  2IST A;  1SZW A;  2AUS A;  1SB7 A;  3LWP A;  1KSL A;  4LAB A;  1KSK A;  3M6V A;  2HVY A;  1UOY A;  2AB4 A;  1KSV A;  3LWV A;  2EY4 A;  1QYU A;  3M6U A;  3U28 A;  3UAI A;  1K8W A;  1R3E A;  2APO A;  1ZL3 A;  3DH3 A;  3LWR A;  3HAX A;  2RFK A;  1PRZ A;  3M4X A;  2FRX A;  1XPI A;  4LGT A;  3M6X A;  3HJY A;  1R3F A;  1ZE1 A;  3LWO A;  3LWQ A;  1V9K A;  1SI7 A;  3M6W A;  1V9F A;  2I82 A;  1Z2Z A;  3ZV0 C;  3HJW A;  3MQK A;  1ZE2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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