1ZL3A

Coupling of active site motions and rna binding
Total Genus 80
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
80
sequence length
302
structure length
302
Chain Sequence
MDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALNPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLVV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase/rna
molecule keywords 5'-R(*GP*GP*CP*AP*AP*CP*GP*GP*UP*(FLO) UP*CP*GP*AP*UP*CP*CP*
publication title Precursor complex structure of pseudouridine synthase TruB suggests coupling of active site perturbations to an RNA-sequestering peripheral protein domain
pubmed doi rcsb
source organism Escherichia coli
total genus 80
structure length 302
sequence length 302
ec nomenclature ec 5.4.99.25: tRNA pseudouridine(55) synthase.
pdb deposition date 2005-05-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01509 TruB_N TruB family pseudouridylate synthase (N terminal domain)
A PF09157 TruB-C_2 Pseudouridine synthase II TruB, C-terminal
A PF16198 TruB_C_2 tRNA pseudouridylate synthase B C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.130.10 Mainly Beta Roll Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 PUA domain 1zl3A02
3.30.2350.10 Alpha Beta 2-Layer Sandwich Pseudouridine synthase Pseudouridine synthase 1zl3A01
1ZS7A 3LWPA 3LWQA 2J5TA 1R3FA 1WXWA 1ZE1A 3U28A 3LWOA 1IT7A 1J2BA 4LGTA 2HVYA 3HAXA 3C0KA 3HJWA 3UAIA 2RFKA 1ZE2A 3LWVA 1KSKA 2B78A 3D79A 1Q7HA 1WXXA 1IQ8A 1IT8A 2EY4A 1V9FA 2Q07A 1KSVA 3DH3A 2CX0A 1R3EA 1SGVA 1SQWA 1ZL3A 2APOA 1KSLA 2P38A 3LDFA 1PRZA 1T5YA 4Q1TA 2ISTA 4DMGA 3HJYA 3MQKA 1V9KA 2CX1A 2J5VA 2AUSA 1XPIA 1K8WA 4LABA 1QYUA 2CWWA 3LWRA 3VSEA 2I82A 2AS0A 2AB4A
chains in the Genus database with same CATH superfamily
1ZS7A 1R3FA 3U28A 2HVYA 3C0KA 3UAIA 1UOYA 1Q7HA 1IT8A 4CI1B 1PRZA 2FRXA 1K8WA 3VSEA 2J5TA 1WXWA 1ZE1A 3M6WA 3LWVA 2B78A 1IQ8A 3M4XA 2EY4A 1V9FA 3DH3A 2CX0A 1SQWA 2APOA 1ZL3A 1T5YA 2ISTA 1SI7A 1V9KA 2CX1A 2J5VA 4LABA 1QYUA 3LJCA 2KKUA 1SB7A 1IT7A 1XNEA 1J2BA 2RFKA 1KSKA 1WXXA 1Z2ZA 3M6UA 2Z0TA 3M6XA 1SGVA 2P38A 3LDFA 1SZWA 3ZV0C 4DMGA 2E5OA 3MQKA 4CI2B 1XPIA 1ZBOA 3LWRA 2CWWA 3IUWA 3LWPA 3LWQA 4CI3B 1TE7A 3LWOA 4LGTA 3HAXA 3HJWA 3M65A 1ZE2A 3D79A 2DP9A 4TZ4C 1S04A 2ANEA 1WK2A 2Q07A 1KSVA 1R3EA 1KSLA 4Q1TA 3HJYA 2AUSA 3M6VA 2I82A 2AS0A 2AB4A
chains in the Genus database with same CATH topology
1ZS7A 3LWPA 3LWQA 2J5TA 1R3FA 1WXWA 1SB7A 1ZE1A 3U28A 3LWOA 1IT7A 1J2BA 4LGTA 2HVYA 3HAXA 3C0KA 3HJWA 3UAIA 2RFKA 1ZE2A 3LWVA 1KSKA 2B78A 3D79A 1Q7HA 1WXXA 1IQ8A 1IT8A 2EY4A 1V9FA 1Z2ZA 2Q07A 1KSVA 3DH3A 2CX0A 1R3EA 1SGVA 1SQWA 1ZL3A 2APOA 1KSLA 2P38A 3LDFA 1SZWA 1PRZA 1T5YA 4Q1TA 2ISTA 4DMGA 3HJYA 3MQKA 1SI7A 1V9KA 2CX1A 2J5VA 2AUSA 1XPIA 1K8WA 4LABA 1QYUA 2CWWA 3LWRA 3VSEA 2I82A 2AS0A 2AB4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ZS7 A;  3LWP A;  3LWQ A;  2J5T A;  1R3F A;  1WXW A;  1ZE1 A;  3U28 A;  3LWO A;  1IT7 A;  1J2B A;  4LGT A;  2HVY A;  3HAX A;  3C0K A;  3HJW A;  3UAI A;  2RFK A;  1ZE2 A;  3LWV A;  1KSK A;  2B78 A;  3D79 A;  1Q7H A;  1WXX A;  1IQ8 A;  1IT8 A;  2EY4 A;  1V9F A;  2Q07 A;  1KSV A;  3DH3 A;  2CX0 A;  1R3E A;  1SGV A;  1SQW A;  1ZL3 A;  2APO A;  1KSL A;  2P38 A;  3LDF A;  1PRZ A;  1T5Y A;  4Q1T A;  2IST A;  4DMG A;  3HJY A;  3MQK A;  1V9K A;  2CX1 A;  2J5V A;  2AUS A;  1XPI A;  1K8W A;  4LAB A;  1QYU A;  2CWW A;  3LWR A;  3VSE A;  2I82 A;  2AS0 A;  2AB4 A; 
#chains in the Genus database with same CATH topology
 1ZS7 A;  1R3F A;  3U28 A;  2HVY A;  3C0K A;  3UAI A;  1UOY A;  1Q7H A;  1IT8 A;  4CI1 B;  1PRZ A;  2FRX A;  1K8W A;  3VSE A;  2J5T A;  1WXW A;  1ZE1 A;  3M6W A;  3LWV A;  2B78 A;  1IQ8 A;  3M4X A;  2EY4 A;  1V9F A;  3DH3 A;  2CX0 A;  1SQW A;  2APO A;  1ZL3 A;  1T5Y A;  2IST A;  1SI7 A;  1V9K A;  2CX1 A;  2J5V A;  4LAB A;  1QYU A;  3LJC A;  2KKU A;  1SB7 A;  1IT7 A;  1XNE A;  1J2B A;  2RFK A;  1KSK A;  1WXX A;  1Z2Z A;  3M6U A;  2Z0T A;  3M6X A;  1SGV A;  2P38 A;  3LDF A;  1SZW A;  3ZV0 C;  4DMG A;  2E5O A;  3MQK A;  4CI2 B;  1XPI A;  1ZBO A;  3LWR A;  2CWW A;  3IUW A;  3LWP A;  3LWQ A;  4CI3 B;  1TE7 A;  3LWO A;  4LGT A;  3HAX A;  3HJW A;  3M65 A;  1ZE2 A;  3D79 A;  2DP9 A;  4TZ4 C;  1S04 A;  2ANE A;  1WK2 A;  2Q07 A;  1KSV A;  1R3E A;  1KSL A;  4Q1T A;  3HJY A;  2AUS A;  3M6V A;  2I82 A;  2AS0 A;  2AB4 A; 
#chains in the Genus database with same CATH homology
 1ZS7 A;  3LWP A;  3LWQ A;  2J5T A;  1R3F A;  1WXW A;  1SB7 A;  1ZE1 A;  3U28 A;  3LWO A;  1IT7 A;  1J2B A;  4LGT A;  2HVY A;  3HAX A;  3C0K A;  3HJW A;  3UAI A;  2RFK A;  1ZE2 A;  3LWV A;  1KSK A;  2B78 A;  3D79 A;  1Q7H A;  1WXX A;  1IQ8 A;  1IT8 A;  2EY4 A;  1V9F A;  1Z2Z A;  2Q07 A;  1KSV A;  3DH3 A;  2CX0 A;  1R3E A;  1SGV A;  1SQW A;  1ZL3 A;  2APO A;  1KSL A;  2P38 A;  3LDF A;  1SZW A;  1PRZ A;  1T5Y A;  4Q1T A;  2IST A;  4DMG A;  3HJY A;  3MQK A;  1SI7 A;  1V9K A;  2CX1 A;  2J5V A;  2AUS A;  1XPI A;  1K8W A;  4LAB A;  1QYU A;  2CWW A;  3LWR A;  3VSE A;  2I82 A;  2AS0 A;  2AB4 A; 
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similar chains in the Genus database (?% sequence similarity)
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