1ZL3A

Coupling of active site motions and rna binding
Total Genus 80
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
80
sequence length
302
structure length
302
Chain Sequence
MDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALNPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLVV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 5'-R(*GP*GP*CP*AP*AP*CP*GP*GP*UP*(FLO) UP*CP*GP*AP*UP*CP*CP*
publication title Precursor complex structure of pseudouridine synthase TruB suggests coupling of active site perturbations to an RNA-sequestering peripheral protein domain
pubmed doi rcsb
source organism Escherichia coli
molecule tags Lyase/rna
total genus 80
structure length 302
sequence length 302
ec nomenclature ec 5.4.99.25: tRNA pseudouridine(55) synthase.
pdb deposition date 2005-05-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01509 TruB_N TruB family pseudouridylate synthase (N terminal domain)
A PF09157 TruB-C_2 Pseudouridine synthase II TruB, C-terminal
A PF16198 TruB_C_2 tRNA pseudouridylate synthase B C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.130.10 Mainly Beta Roll Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 PUA domain 1zl3A02
3.30.2350.10 Alpha Beta 2-Layer Sandwich Pseudouridine synthase Pseudouridine synthase 1zl3A01
2CX0A 1R3EA 3HJYA 2EY4A 3LWVA 3D79A 3LWRA 1ZE1A 2APOA 1V9FA 2B78A 3LDFA 2AB4A 1ZE2A 3C0KA 1V9KA 1KSKA 2ISTA 3LWQA 1IT8A 1IQ8A 2AS0A 1ZL3A 1ZS7A 3HAXA 2RFKA 1SQWA 1SGVA 3LWOA 2P38A 3LWPA 2AUSA 3DH3A 3HJWA 1WXXA 1Q7HA 1QYUA 2Q07A 3UAIA 1KSLA 2J5VA 1KSVA 4DMGA 3VSEA 1PRZA 1IT7A 1XPIA 3U28A 4LABA 1J2BA 1T5YA 2I82A 1R3FA 2CX1A 3MQKA 2HVYA 1WXWA 2CWWA 1K8WA 4Q1TA 2J5TA 4LGTA
chains in the Genus database with same CATH superfamily
1ZE1A 3M6XA 2ANEA 2FRXA 1IQ8A 1ZS7A 1SQWA 2AUSA 3DH3A 1Q7HA 3M4XA 1WK2A 3ZV0C 1XNEA 3U28A 4LABA 1SZWA 2I82A 1R3FA 3MQKA 1UOYA 1R3EA 1SI7A 2EY4A 3LWVA 3D79A 1V9KA 1TE7A 1ZL3A 1SGVA 1S04A 3HJWA 3M6VA 2Q07A 1ZBOA 4DMGA 1T5YA 3M6UA 4Q1TA 2DP9A 2J5TA 4LGTA 2CX0A 2Z0TA 4CI1B 2APOA 1V9FA 2E5OA 2AB4A 1ZE2A 1KSKA 3M65A 2ISTA 1IT8A 2AS0A 3LWOA 3M6WA 3LWPA 1QYUA 1KSLA 2J5VA 1KSVA 3IUWA 3VSEA 1PRZA 1J2BA 2CX1A 1WXWA 2KKUA 1IT7A 3HJYA 4TZ4C 3LWRA 2B78A 3LDFA 3C0KA 3LWQA 3HAXA 2RFKA 2P38A 1Z2ZA 1WXXA 3UAIA 3LJCA 1XPIA 4CI2B 1SB7A 2HVYA 2CWWA 1K8WA 4CI3B
chains in the Genus database with same CATH topology
2CX0A 1R3EA 3HJYA 1SI7A 2EY4A 3LWVA 3D79A 3LWRA 1ZE1A 2APOA 1V9FA 2B78A 3LDFA 2AB4A 1ZE2A 3C0KA 1V9KA 1KSKA 2ISTA 3LWQA 1IT8A 1IQ8A 2AS0A 1ZL3A 1ZS7A 3HAXA 2RFKA 1SQWA 1SGVA 3LWOA 2P38A 3LWPA 2AUSA 3DH3A 3HJWA 1Z2ZA 1WXXA 1Q7HA 1QYUA 2Q07A 3UAIA 1KSLA 2J5VA 1KSVA 4DMGA 3VSEA 1PRZA 1IT7A 1XPIA 3U28A 4LABA 1J2BA 1SZWA 1T5YA 2I82A 1R3FA 2CX1A 3MQKA 1SB7A 2HVYA 1WXWA 2CWWA 1K8WA 4Q1TA 2J5TA 4LGTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2CX0 A;  1R3E A;  3HJY A;  2EY4 A;  3LWV A;  3D79 A;  3LWR A;  1ZE1 A;  2APO A;  1V9F A;  2B78 A;  3LDF A;  2AB4 A;  1ZE2 A;  3C0K A;  1V9K A;  1KSK A;  2IST A;  3LWQ A;  1IT8 A;  1IQ8 A;  2AS0 A;  1ZL3 A;  1ZS7 A;  3HAX A;  2RFK A;  1SQW A;  1SGV A;  3LWO A;  2P38 A;  3LWP A;  2AUS A;  3DH3 A;  3HJW A;  1WXX A;  1Q7H A;  1QYU A;  2Q07 A;  3UAI A;  1KSL A;  2J5V A;  1KSV A;  4DMG A;  3VSE A;  1PRZ A;  1IT7 A;  1XPI A;  3U28 A;  4LAB A;  1J2B A;  1T5Y A;  2I82 A;  1R3F A;  2CX1 A;  3MQK A;  2HVY A;  1WXW A;  2CWW A;  1K8W A;  4Q1T A;  2J5T A;  4LGT A; 
#chains in the Genus database with same CATH topology
 1ZE1 A;  3M6X A;  2ANE A;  2FRX A;  1IQ8 A;  1ZS7 A;  1SQW A;  2AUS A;  3DH3 A;  1Q7H A;  3M4X A;  1WK2 A;  3ZV0 C;  1XNE A;  3U28 A;  4LAB A;  1SZW A;  2I82 A;  1R3F A;  3MQK A;  1UOY A;  1R3E A;  1SI7 A;  2EY4 A;  3LWV A;  3D79 A;  1V9K A;  1TE7 A;  1ZL3 A;  1SGV A;  1S04 A;  3HJW A;  3M6V A;  2Q07 A;  1ZBO A;  4DMG A;  1T5Y A;  3M6U A;  4Q1T A;  2DP9 A;  2J5T A;  4LGT A;  2CX0 A;  2Z0T A;  4CI1 B;  2APO A;  1V9F A;  2E5O A;  2AB4 A;  1ZE2 A;  1KSK A;  3M65 A;  2IST A;  1IT8 A;  2AS0 A;  3LWO A;  3M6W A;  3LWP A;  1QYU A;  1KSL A;  2J5V A;  1KSV A;  3IUW A;  3VSE A;  1PRZ A;  1J2B A;  2CX1 A;  1WXW A;  2KKU A;  1IT7 A;  3HJY A;  4TZ4 C;  3LWR A;  2B78 A;  3LDF A;  3C0K A;  3LWQ A;  3HAX A;  2RFK A;  2P38 A;  1Z2Z A;  1WXX A;  3UAI A;  3LJC A;  1XPI A;  4CI2 B;  1SB7 A;  2HVY A;  2CWW A;  1K8W A;  4CI3 B; 
#chains in the Genus database with same CATH homology
 2CX0 A;  1R3E A;  3HJY A;  1SI7 A;  2EY4 A;  3LWV A;  3D79 A;  3LWR A;  1ZE1 A;  2APO A;  1V9F A;  2B78 A;  3LDF A;  2AB4 A;  1ZE2 A;  3C0K A;  1V9K A;  1KSK A;  2IST A;  3LWQ A;  1IT8 A;  1IQ8 A;  2AS0 A;  1ZL3 A;  1ZS7 A;  3HAX A;  2RFK A;  1SQW A;  1SGV A;  3LWO A;  2P38 A;  3LWP A;  2AUS A;  3DH3 A;  3HJW A;  1Z2Z A;  1WXX A;  1Q7H A;  1QYU A;  2Q07 A;  3UAI A;  1KSL A;  2J5V A;  1KSV A;  4DMG A;  3VSE A;  1PRZ A;  1IT7 A;  1XPI A;  3U28 A;  4LAB A;  1J2B A;  1SZW A;  1T5Y A;  2I82 A;  1R3F A;  2CX1 A;  3MQK A;  1SB7 A;  2HVY A;  1WXW A;  2CWW A;  1K8W A;  4Q1T A;  2J5T A;  4LGT A; 
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