1ZL3A

Coupling of active site motions and rna binding
Total Genus 80
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
80
sequence length
302
structure length
302
Chain Sequence
MDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALNPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLVV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase/rna
source organism Escherichia coli
publication title Precursor complex structure of pseudouridine synthase TruB suggests coupling of active site perturbations to an RNA-sequestering peripheral protein domain
pubmed doi rcsb
molecule keywords 5'-R(*GP*GP*CP*AP*AP*CP*GP*GP*UP*(FLO) UP*CP*GP*AP*UP*CP*CP*
total genus 80
structure length 302
sequence length 302
ec nomenclature ec 5.4.99.25: tRNA pseudouridine(55) synthase.
pdb deposition date 2005-05-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01509 TruB_N TruB family pseudouridylate synthase (N terminal domain)
A PF09157 TruB-C_2 Pseudouridine synthase II TruB, C-terminal
A PF16198 TruB_C_2 tRNA pseudouridylate synthase B C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.130.10 Mainly Beta Roll Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 PUA domain 1zl3A02
3.30.2350.10 Alpha Beta 2-Layer Sandwich Pseudouridine synthase Pseudouridine synthase 1zl3A01
1PRZA 2CX0A 1T5YA 2CWWA 3LDFA 2ISTA 1K8WA 1XPIA 4LGTA 3U28A 2RFKA 3C0KA 3LWPA 3LWQA 1KSLA 2I82A 4Q1TA 3DH3A 3HJYA 1Q7HA 2AS0A 2Q07A 2J5VA 3HJWA 2B78A 1QYUA 2EY4A 1KSVA 2HVYA 2J5TA 1IQ8A 1IT7A 1SQWA 2APOA 2P38A 4LABA 2AUSA 1R3FA 2CX1A 3LWVA 3MQKA 1WXXA 3UAIA 3D79A 1ZE2A 1KSKA 4DMGA 3HAXA 3LWOA 1WXWA 1V9KA 1V9FA 1SGVA 3VSEA 1ZS7A 1R3EA 1ZL3A 3LWRA 1J2BA 2AB4A 1IT8A 1ZE1A
chains in the Genus database with same CATH superfamily
1K8WA 3LWPA 4TZ4C 1KSLA 2I82A 4Q1TA 1Z2ZA 3DH3A 2AS0A 3M6XA 2J5VA 2B78A 4CI1B 2APOA 4CI3B 1WXXA 3UAIA 1ZE2A 1KSKA 4DMGA 3LWOA 1WXWA 3M6UA 1ZL3A 2AB4A 1IT8A 1ZE1A 1SI7A 2ISTA 1T5YA 2CWWA 3C0KA 3ZV0C 2Q07A 1IT7A 3LWVA 4LABA 2AUSA 3LJCA 2CX1A 3M65A 4CI2B 1SGVA 1ZS7A 3M6VA 3LWRA 2CX0A 3LDFA 1XPIA 1ZBOA 3HJYA 1Q7HA 3HJWA 1KSVA 2J5TA 1IQ8A 1SQWA 2FRXA 1R3FA 1SB7A 1SZWA 1V9FA 3VSEA 1XNEA 3U28A 1PRZA 2RFKA 4LGTA 1UOYA 3LWQA 1WK2A 2Z0TA 2EY4A 1QYUA 2ANEA 3M4XA 2HVYA 3MQKA 2P38A 1TE7A 2E5OA 3D79A 3HAXA 1V9KA 1S04A 2KKUA 2DP9A 1R3EA 3M6WA 1J2BA 3IUWA
chains in the Genus database with same CATH topology
1PRZA 2CX0A 1T5YA 2CWWA 3LDFA 1SI7A 1K8WA 1XPIA 2ISTA 4LGTA 2RFKA 3C0KA 3LWPA 3U28A 3LWQA 1KSLA 2I82A 4Q1TA 1Z2ZA 3DH3A 3HJYA 1Q7HA 2AS0A 2Q07A 2J5VA 3HJWA 2B78A 1QYUA 2EY4A 1KSVA 3MQKA 2HVYA 2J5TA 1IQ8A 1IT7A 1SQWA 2APOA 2P38A 4LABA 2AUSA 1R3FA 2CX1A 1SB7A 3LWVA 1WXXA 1SZWA 3UAIA 3D79A 1ZE2A 1KSKA 4DMGA 3HAXA 3LWOA 1WXWA 1V9KA 1V9FA 1SGVA 3VSEA 1ZS7A 1R3EA 1ZL3A 3LWRA 1J2BA 2AB4A 1IT8A 1ZE1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PRZ A;  2CX0 A;  1T5Y A;  2CWW A;  3LDF A;  2IST A;  1K8W A;  1XPI A;  4LGT A;  3U28 A;  2RFK A;  3C0K A;  3LWP A;  3LWQ A;  1KSL A;  2I82 A;  4Q1T A;  3DH3 A;  3HJY A;  1Q7H A;  2AS0 A;  2Q07 A;  2J5V A;  3HJW A;  2B78 A;  1QYU A;  2EY4 A;  1KSV A;  2HVY A;  2J5T A;  1IQ8 A;  1IT7 A;  1SQW A;  2APO A;  2P38 A;  4LAB A;  2AUS A;  1R3F A;  2CX1 A;  3LWV A;  3MQK A;  1WXX A;  3UAI A;  3D79 A;  1ZE2 A;  1KSK A;  4DMG A;  3HAX A;  3LWO A;  1WXW A;  1V9K A;  1V9F A;  1SGV A;  3VSE A;  1ZS7 A;  1R3E A;  1ZL3 A;  3LWR A;  1J2B A;  2AB4 A;  1IT8 A;  1ZE1 A; 
#chains in the Genus database with same CATH topology
 1K8W A;  3LWP A;  4TZ4 C;  1KSL A;  2I82 A;  4Q1T A;  1Z2Z A;  3DH3 A;  2AS0 A;  3M6X A;  2J5V A;  2B78 A;  4CI1 B;  2APO A;  4CI3 B;  1WXX A;  3UAI A;  1ZE2 A;  1KSK A;  4DMG A;  3LWO A;  1WXW A;  3M6U A;  1ZL3 A;  2AB4 A;  1IT8 A;  1ZE1 A;  1SI7 A;  2IST A;  1T5Y A;  2CWW A;  3C0K A;  3ZV0 C;  2Q07 A;  1IT7 A;  3LWV A;  4LAB A;  2AUS A;  3LJC A;  2CX1 A;  3M65 A;  4CI2 B;  1SGV A;  1ZS7 A;  3M6V A;  3LWR A;  2CX0 A;  3LDF A;  1XPI A;  1ZBO A;  3HJY A;  1Q7H A;  3HJW A;  1KSV A;  2J5T A;  1IQ8 A;  1SQW A;  2FRX A;  1R3F A;  1SB7 A;  1SZW A;  1V9F A;  3VSE A;  1XNE A;  3U28 A;  1PRZ A;  2RFK A;  4LGT A;  1UOY A;  3LWQ A;  1WK2 A;  2Z0T A;  2EY4 A;  1QYU A;  2ANE A;  3M4X A;  2HVY A;  3MQK A;  2P38 A;  1TE7 A;  2E5O A;  3D79 A;  3HAX A;  1V9K A;  1S04 A;  2KKU A;  2DP9 A;  1R3E A;  3M6W A;  1J2B A;  3IUW A; 
#chains in the Genus database with same CATH homology
 1PRZ A;  2CX0 A;  1T5Y A;  2CWW A;  3LDF A;  1SI7 A;  1K8W A;  1XPI A;  2IST A;  4LGT A;  2RFK A;  3C0K A;  3LWP A;  3U28 A;  3LWQ A;  1KSL A;  2I82 A;  4Q1T A;  1Z2Z A;  3DH3 A;  3HJY A;  1Q7H A;  2AS0 A;  2Q07 A;  2J5V A;  3HJW A;  2B78 A;  1QYU A;  2EY4 A;  1KSV A;  3MQK A;  2HVY A;  2J5T A;  1IQ8 A;  1IT7 A;  1SQW A;  2APO A;  2P38 A;  4LAB A;  2AUS A;  1R3F A;  2CX1 A;  1SB7 A;  3LWV A;  1WXX A;  1SZW A;  3UAI A;  3D79 A;  1ZE2 A;  1KSK A;  4DMG A;  3HAX A;  3LWO A;  1WXW A;  1V9K A;  1V9F A;  1SGV A;  3VSE A;  1ZS7 A;  1R3E A;  1ZL3 A;  3LWR A;  1J2B A;  2AB4 A;  1IT8 A;  1ZE1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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