1SZWA

Crystal structure of e. coli trna pseudouridine synthase trud
Total Genus 98
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
98
sequence length
341
structure length
334
Chain Sequence
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGAQRWAQRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords tRNA pseudouridine synthase D
publication title X-ray structure of tRNA pseudouridine synthase TruD reveals an inserted domain with a novel fold
pubmed doi rcsb
source organism Escherichia coli
molecule tags Lyase
total genus 98
structure length 334
sequence length 341
chains with identical sequence B
ec nomenclature ec 5.4.99.27: tRNA pseudouridine(13) synthase.
pdb deposition date 2004-04-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01142 TruD tRNA pseudouridine synthase D (TruD)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.2340.10 Alpha Beta 2-Layer Sandwich Pseudouridine synthase tRNA pseudouridine synthase TruD 1szwA02
3.30.2350.20 Alpha Beta 2-Layer Sandwich Pseudouridine synthase Pseudouridine synthase 1szwA01
1Z2ZA 1SB7A 1SI7A 1SZWA
chains in the Genus database with same CATH superfamily
3LWRA 1KSVA 1R3EA 3HJYA 3LWQA 1R3FA 1ZL3A 1SZWA 2ISTA 1QYUA 4LGTA 3DH3A 1V9KA 1Z2ZA 1V9FA 1PRZA 1SB7A 1SGVA 3LWOA 3HAXA 2EY4A 4LABA 1K8WA 2I82A 2AB4A 3U28A 3HJWA 1KSLA 2AUSA 1ZE1A 3MQKA 3LWVA 1SI7A 1ZE2A 2RFKA 3LWPA 3UAIA 1KSKA 2HVYA 2APOA 1XPIA
chains in the Genus database with same CATH topology
3LWRA 1KSVA 1R3EA 3HJYA 3LWQA 1R3FA 1ZL3A 1SZWA 2ISTA 1QYUA 4LGTA 3DH3A 1V9KA 1Z2ZA 1V9FA 1PRZA 1SB7A 1SGVA 3LWOA 3HAXA 2EY4A 4LABA 1K8WA 2I82A 2AB4A 3U28A 3HJWA 1KSLA 2AUSA 1ZE1A 3MQKA 3LWVA 1SI7A 1ZE2A 2RFKA 3LWPA 3UAIA 1KSKA 2HVYA 2APOA 1XPIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Z2Z A;  1SB7 A;  1SI7 A;  1SZW A; 
#chains in the Genus database with same CATH topology
 3LWR A;  1KSV A;  1R3E A;  3HJY A;  3LWQ A;  1R3F A;  1ZL3 A;  1SZW A;  2IST A;  1QYU A;  4LGT A;  3DH3 A;  1V9K A;  1Z2Z A;  1V9F A;  1PRZ A;  1SB7 A;  1SGV A;  3LWO A;  3HAX A;  2EY4 A;  4LAB A;  1K8W A;  2I82 A;  2AB4 A;  3U28 A;  3HJW A;  1KSL A;  2AUS A;  1ZE1 A;  3MQK A;  3LWV A;  1SI7 A;  1ZE2 A;  2RFK A;  3LWP A;  3UAI A;  1KSK A;  2HVY A;  2APO A;  1XPI A; 
#chains in the Genus database with same CATH homology
 3LWR A;  1KSV A;  1R3E A;  3HJY A;  3LWQ A;  1R3F A;  1ZL3 A;  1SZW A;  2IST A;  1QYU A;  4LGT A;  3DH3 A;  1V9K A;  1Z2Z A;  1V9F A;  1PRZ A;  1SB7 A;  1SGV A;  3LWO A;  3HAX A;  2EY4 A;  4LAB A;  1K8W A;  2I82 A;  2AB4 A;  3U28 A;  3HJW A;  1KSL A;  2AUS A;  1ZE1 A;  3MQK A;  3LWV A;  1SI7 A;  1ZE2 A;  2RFK A;  3LWP A;  3UAI A;  1KSK A;  2HVY A;  2APO A;  1XPI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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