The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
60
|
sequence length |
240
|
structure length |
240
|
Chain Sequence |
DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSSEV
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structure of an RluF-RNA complex: a base-pair rearrangement is the key to selectivity of RluF for U2604 of the ribosome.
pubmed doi rcsb |
| molecule keywords |
Ribosomal large subunit pseudouridine synthase F
|
| molecule tags |
Isomerase/rna
|
| source organism |
Escherichia coli
|
| total genus |
60
|
| structure length |
240
|
| sequence length |
240
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature |
ec
5.4.99.21: 23S rRNA pseudouridine(2604) synthase. |
| pdb deposition date | 2008-06-16 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00849 | PseudoU_synth_2 | RNA pseudouridylate synthase |
| A | PF01479 | S4 | S4 domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Roll | Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A | RNA-binding S4 domain | ||
| Alpha Beta | 2-Layer Sandwich | Pseudouridine synthase | Pseudouridine synthase |
#chains in the Genus database with same CATH superfamily 1H3E A; 4KHP D; 1C06 A; 3T1H D; 1N34 D; 4JI1 D; 4OUD A; 1QYU A; 1ZE2 A; 4OX9 D; 1XMQ D; 2E5L D; 4JYA D; 2AB4 A; 3MQK A; 4K0K D; 5BR8 D; 4X66 D; 1XPI A; 1ZE1 A; 4YHH D; 2UU9 D; 4X64 D; 1IBL D; 1V9K A; 2UXC D; 1IBK D; 2UUB D; 1N33 D; 4DV2 D; 4AQY D; 2JAN A; 1I94 D; 3T1Y D; 1FJG D; 1FKA D; 4YY3 D; 4GKJ D; 4DV6 D; 3LWV A; 3HJY A; 1DM9 A; 4DR7 D; 4JI6 D; 4LGT A; 4LF5 D; 1HR0 D; 2F4V D; 2I82 A; 2UXB D; 4JI0 D; 1JH3 A; 4JV5 D; 3LWR A; 4X62 D; 4DV7 D; 4DV4 D; 2HVY A; 1KSV A; 1IBM D; 1SGV A; 4JI3 D; 1XMO D; 4JI5 D; 3HJW A; 3HAX A; 2EY4 A; 4GKK D; 3KBG A; 1KSK A; 5LMU D; 2UUC D; 4JI2 D; 4DR3 D; 2AUS A; 1N32 D; 3LWO A; 4LF6 D; 4LFC D; 4LF7 D; 4DR2 D; 4B3R D; 4NXM D; 4LFA D; 3DH3 A; 4DV1 D; 1J5E D; 3LWP A; 1H3F A; 4NXN D; 2VQE D; 4LF4 D; 1XNR D; 4LFB D; 4JI7 D; 1HNX D; 4DR1 D; 1VIO A; 5IWA D; 1ZL3 A; 2APO A; 2VQF D; 3U28 A; 4DUY D; 1HNW D; 2HHH D; 1N36 D; 4LF8 D; 1R3F A; 2UXD D; 2IST A; 4B3S D; 4DR4 D; 4LF9 D; 1R3E A; 1P9K A; 2KTL A; 2ZM6 D; 1V9F A; 4DR6 D; 1HNZ D; 4JI8 D; 1PRZ A; 4B3T D; 2K6P A; 4DV3 D; 4LAB A; 3OTO D; 1C05 A; 3UAI A; 2UUA D; 4B3M D; 1KSL A; 4DUZ D; 4X65 D; 4JI4 D; 3HP7 A; 1XNQ D; 4DV0 D; 2RFK A; 5LMN D; 4DR5 D; 4DV5 D; 3LWQ A; 1K8W A; #chains in the Genus database with same CATH topology 1H3E A; 4KHP D; 1C06 A; 3T1H D; 1N34 D; 4JI1 D; 4OUD A; 1QYU A; 1ZE2 A; 4OX9 D; 1XMQ D; 2E5L D; 2NVU B; 4JYA D; 2AB4 A; 3ONG A; 3MQK A; 4K0K D; 5BR8 D; 4X66 D; 1XPI A; 1ZE1 A; 4YHH D; 3JAM E; 2UU9 D; 4X64 D; 1IBL D; 1V9K A; 4W5V B; 2UXC D; 3KYD B; 3FN1 A; 1IBK D; 2UUB D; 1N33 D; 4DV2 D; 4NNJ A; 2JAN A; 4AQY D; 3T1Y D; 1I94 D; 1FJG D; 1FKA D; 4YY3 D; 4GKJ D; 4DV6 D; 3LWV A; 1Z2Z A; 3HJY A; 5LL6 S; 1DM9 A; 4DR7 D; 4JI6 D; 1Y8R B; 4LGT A; 4LF5 D; 1HR0 D; 3KYC B; 2F4V D; 2I82 A; 3J7A F; 2UXB D; 4JI0 D; 1Y8X B; 1JH3 A; 4JV5 D; 3LWR A; 4X62 D; 4DV7 D; 4DV4 D; 2HVY A; 1KSV A; 1IBM D; 1SGV A; 4JI3 D; 1XMO D; 4JI5 D; 3HJW A; 3HAX A; 2EY4 A; 4GKK D; 3KBG A; 1KSK A; 5LMU D; 2UUC D; 4JI2 D; 4DR3 D; 2AUS A; 1N32 D; 3LWO A; 4LF6 D; 5A2Q E; 4LFC D; 2LQ7 A; 4DR2 D; 4LF7 D; 4B3R D; 4NXM D; 4LFA D; 3DH3 A; 4DV1 D; 1J5E D; 3LWP A; 1H3F A; 4NXN D; 2VQE D; 4LF4 D; 1XNR D; 4LFB D; 5FQ2 B; 1HNX D; 4JI7 D; 1SB7 A; 4DR1 D; 4II2 A; 2ZTB A; 1VIO A; 5IWA D; 5IT9 E; 1ZL3 A; 2APO A; 2VQF D; 3ONH A; 4II3 A; 3U28 A; 4DUY D; 1SZW A; 1HNW D; 2HHH D; 3J80 E; 1N36 D; 4LF8 D; 1R3F A; 2UXD D; 2IST A; 4B3S D; 4DR4 D; 4LF9 D; 5FLX E; 1R3E A; 1P9K A; 2KTL A; 2ZM6 D; 1V9F A; 4DR6 D; 1HNZ D; 3J81 E; 4JI8 D; 1PRZ A; 4B3T D; 2K6P A; 1SI7 A; 4DV3 D; 4LAB A; 3OTO D; 1C05 A; 3UAI A; 3CMM A; 2UUA D; 4B3M D; 1KSL A; 4DUZ D; 4X65 D; 4JI4 D; 3HP7 A; 5KNL A; 1XNQ D; 1Y8Q B; 4DV0 D; 2RFK A; 5LMN D; 4DR5 D; 4DV5 D; 2I1S A; 3LWQ A; 1K8W A; #chains in the Genus database with same CATH homology 1H3E A; 4KHP D; 1C06 A; 3T1H D; 1N34 D; 4JI1 D; 4OUD A; 1QYU A; 1ZE2 A; 4OX9 D; 1XMQ D; 2E5L D; 4JYA D; 2AB4 A; 3MQK A; 4K0K D; 5BR8 D; 4X66 D; 1XPI A; 1ZE1 A; 4YHH D; 2UU9 D; 4X64 D; 1IBL D; 1V9K A; 2UXC D; 1IBK D; 2UUB D; 1N33 D; 4DV2 D; 4AQY D; 2JAN A; 1I94 D; 3T1Y D; 1FJG D; 1FKA D; 4YY3 D; 4GKJ D; 4DV6 D; 3LWV A; 1Z2Z A; 3HJY A; 1DM9 A; 4DR7 D; 4JI6 D; 4LGT A; 4LF5 D; 1HR0 D; 2F4V D; 2I82 A; 2UXB D; 4JI0 D; 1JH3 A; 4JV5 D; 3LWR A; 4X62 D; 4DV7 D; 4DV4 D; 2HVY A; 1KSV A; 1IBM D; 1SGV A; 4JI3 D; 1XMO D; 4JI5 D; 3HJW A; 3HAX A; 2EY4 A; 4GKK D; 3KBG A; 1KSK A; 5LMU D; 2UUC D; 4JI2 D; 4DR3 D; 2AUS A; 1N32 D; 3LWO A; 4LF6 D; 4LFC D; 4LF7 D; 4DR2 D; 4B3R D; 4NXM D; 4LFA D; 3DH3 A; 4DV1 D; 1J5E D; 3LWP A; 1H3F A; 4NXN D; 2VQE D; 4LF4 D; 1XNR D; 4LFB D; 4JI7 D; 1HNX D; 1SB7 A; 4DR1 D; 1VIO A; 5IWA D; 1ZL3 A; 2APO A; 2VQF D; 3U28 A; 4DUY D; 1SZW A; 1HNW D; 2HHH D; 1N36 D; 4LF8 D; 1R3F A; 2UXD D; 2IST A; 4B3S D; 4DR4 D; 4LF9 D; 1R3E A; 1P9K A; 2KTL A; 2ZM6 D; 1V9F A; 4DR6 D; 1HNZ D; 4JI8 D; 1PRZ A; 4B3T D; 2K6P A; 1SI7 A; 4DV3 D; 4LAB A; 3OTO D; 1C05 A; 3UAI A; 2UUA D; 4B3M D; 1KSL A; 4DUZ D; 4X65 D; 4JI4 D; 3HP7 A; 1XNQ D; 4DV0 D; 2RFK A; 5LMN D; 4DR5 D; 4DV5 D; 3LWQ A; 1K8W A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
