1CS3 | Genus

Total Genus 34

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	34
sequence length	116
structure length	116
Chain Sequence	GMIQLQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNSQHYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQCLKML

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 116 atoms

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116 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transcription
source organism	Homo sapiens
publication title	Structure-function studies of the BTB/POZ transcriptional repression domain from the promyelocytic leukemia zinc finger oncoprotein. pubmed rcsb
molecule keywords	ZINC FINGER PROTEIN PLZF
total genus	34
structure length	116
sequence length	116
ec nomenclature
pdb deposition date	1999-08-16

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.710.10	Alpha Beta	2-Layer Sandwich	Potassium Channel Kv1.1; Chain A	Potassium Channel Kv1.1; Chain A	1cs3A00

3HVEA 1VCBB 3B84A 4BGCA 1A68A 3LUTB 4W9DB 4AP2A 1EOEA 2VPKA 4J8ZA 4W9FB 3DRZA 1DSXA 2P1QA 4W9GB 4B9KE 1CS3A 1NN7A 3ZRCB 1S1GA 4W9EB 2P1MA 1P22B 2P1PA 1LDKD 4BKTB 1R2BA 2ASTA 3FKCA 1LQBB 5HZGC 4CRHA 2NZ0B 3M8VA 1BUOA 3ZTCB 3MKSA 2E31B 4JTCB 3GA1A 2OVPA 4WQOC 4ZOUA 1FS1B 2MA9C 3LBZA 5EUPA 3ZNGB 3ZRFB 3HQIA 1FS2B 3E4UA 3OGKA 2Q81A 1EODA 2FNJC 5DAFA 3HVEB 4JTDB 4AWJB 4CP3A 3OGMA 5BXDA 5BXHA 4W9HH 4N9F5 4BKSB 1QDWA 2IHCA 3ZTDB 4JTAB 3ZKJB 4W9LB 4B95B 4U2MA 1EOFA 2OVQA 3C6NA 3HU6A 3M5BA 4W9KB 4AJYC 2C9WC 2JZ3C 3BIMA 3OHUA 5BO4C 2P1OA 4W9CB 4APFA 5H7GA 5BXBA 3I3NA 4UYIA 3WSOB 3HTMA 3OGLA 3C6PA 2Z8HA 5LLIB 2E32B 3C6OA 5A15A 2IF5A 5JH5B 1LM8C 3OHVA 2P1NA 4U2NA 1FQVB 5DADA 2I2RA 4EOZA 3ZUNB 4JGHC 1T1DA 4W9HB 4CXJA 3DCGB 2R9RB 5A6RA 2IZVC 4W9JB 3L2OA 1EXBE 1NEXA 4I6JC 1R29A 2A79B 1QDVA 1R28A 4CXTA 4CXIA 3LNMB 5IBKA 2PPIA 3M4TA 3M52A 5FTAA 2OVRA 2ASSA 3V7DA 4W9IB 5HYWB 2NN2A 5H7HA 3KVTA 4HXIA 4UIJA 1HV2A 2VKPA 4B9KB 2YY9A 4U77A
chains in the Genus database with same CATH superfamily

3HVEA 1VCBB 3B84A 4BGCA 1A68A 3LUTB 4W9DB 4AP2A 1EOEA 2VPKA 4J8ZA 4W9FB 3DRZA 1DSXA 2P1QA 4W9GB 4B9KE 1CS3A 1NN7A 3ZRCB 1S1GA 4W9EB 2P1MA 1P22B 2P1PA 1LDKD 4BKTB 1R2BA 2ASTA 3FKCA 1LQBB 5HZGC 4CRHA 2NZ0B 3M8VA 1BUOA 3ZTCB 3MKSA 2E31B 4JTCB 3GA1A 2OVPA 4WQOC 4ZOUA 1FS1B 2MA9C 3LBZA 5EUPA 3ZNGB 3ZRFB 3HQIA 1FS2B 3E4UA 3OGKA 2Q81A 1EODA 2FNJC 5DAFA 3HVEB 3DRYA 4JTDB 4AWJB 4CP3A 3OGMA 5BXDA 5BXHA 4W9HH 4N9F5 4BKSB 1QDWA 2IHCA 3ZTDB 4JTAB 3ZKJB 4W9LB 4B95B 4U2MA 1EOFA 2OVQA 3C6NA 3HU6A 3M5BA 4W9KB 4AJYC 2C9WC 2JZ3C 3BIMA 3OHUA 5BO4C 2P1OA 4W9CB 4APFA 5H7GA 5BXBA 3I3NA 4UYIA 3WSOB 3HTMA 3OGLA 3C6PA 2Z8HA 5LLIB 2E32B 3C6OA 5A15A 2IF5A 5JH5B 1LM8C 3OHVA 2P1NA 4U2NA 1FQVB 5DADA 2I2RA 4EOZA 3ZUNB 4YY8A 4JGHC 1T1DA 4W9HB 4CXJA 3DCGB 2R9RB 5A6RA 2IZVC 4W9JB 3L2OA 1EXBE 1NEXA 4I6JC 1R29A 2A79B 1QDVA 1R28A 4CXTA 4CXIA 3LNMB 5IBKA 2PPIA 3M4TA 3M52A 3DRXA 5FTAA 2OVRA 2ASSA 3V7DA 4ZGCA 4W9IB 5HYWB 2NN2A 5H7HA 3KVTA 4HXIA 4UIJA 1HV2A 2VKPA 4B9KB 2YY9A 4U77A
chains in the Genus database with same CATH topology

3HVEA 1VCBB 3B84A 4BGCA 1A68A 3LUTB 4W9DB 4AP2A 1EOEA 2VPKA 4J8ZA 4W9FB 3DRZA 1DSXA 2P1QA 4W9GB 4B9KE 1CS3A 1NN7A 3ZRCB 1S1GA 4W9EB 2P1MA 1P22B 2P1PA 1LDKD 4BKTB 1R2BA 2ASTA 3FKCA 1LQBB 5HZGC 4CRHA 2NZ0B 3M8VA 1BUOA 3ZTCB 3MKSA 2E31B 4JTCB 3GA1A 2OVPA 4WQOC 4ZOUA 1FS1B 2MA9C 3LBZA 5EUPA 3ZNGB 3ZRFB 3HQIA 1FS2B 3E4UA 3OGKA 2Q81A 1EODA 2FNJC 5DAFA 3HVEB 3DRYA 4JTDB 4AWJB 4CP3A 3OGMA 5BXDA 5BXHA 4W9HH 4N9F5 4BKSB 1QDWA 2IHCA 3ZTDB 4JTAB 3ZKJB 4W9LB 4B95B 4U2MA 1EOFA 2OVQA 3C6NA 3HU6A 3M5BA 4W9KB 4AJYC 2C9WC 2JZ3C 3BIMA 3OHUA 5BO4C 2P1OA 4W9CB 4APFA 5H7GA 5BXBA 3I3NA 4UYIA 3WSOB 3HTMA 3OGLA 3C6PA 2Z8HA 5LLIB 2E32B 3C6OA 5A15A 2IF5A 5JH5B 1LM8C 3OHVA 2P1NA 4U2NA 1FQVB 5DADA 2I2RA 4EOZA 3ZUNB 4YY8A 4JGHC 1T1DA 4W9HB 4CXJA 3DCGB 2R9RB 5A6RA 2IZVC 4W9JB 3L2OA 1EXBE 1NEXA 4I6JC 1R29A 2A79B 1QDVA 1R28A 4CXTA 4CXIA 3LNMB 5IBKA 2PPIA 3M4TA 3M52A 3DRXA 5FTAA 2OVRA 2ASSA 3V7DA 4ZGCA 4W9IB 5HYWB 2NN2A 5H7HA 3KVTA 4HXIA 4UIJA 1HV2A 2VKPA 4B9KB 2YY9A 4U77A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3HVE A;  1VCB B;  3B84 A;  4BGC A;  1A68 A;  3LUT B;  4W9D B;  4AP2 A;  1EOE A;  2VPK A;  4J8Z A;  4W9F B;  3DRZ A;  1DSX A;  2P1Q A;  4W9G B;  4B9K E;  1CS3 A;  1NN7 A;  3ZRC B;  1S1G A;  4W9E B;  2P1M A;  1P22 B;  2P1P A;  1LDK D;  4BKT B;  1R2B A;  2AST A;  3FKC A;  1LQB B;  5HZG C;  4CRH A;  2NZ0 B;  3M8V A;  1BUO A;  3ZTC B;  3MKS A;  2E31 B;  4JTC B;  3GA1 A;  2OVP A;  4WQO C;  4ZOU A;  1FS1 B;  2MA9 C;  3LBZ A;  5EUP A;  3ZNG B;  3ZRF B;  3HQI A;  1FS2 B;  3E4U A;  3OGK A;  2Q81 A;  1EOD A;  2FNJ C;  5DAF A;  3HVE B;  4JTD B;  4AWJ B;  4CP3 A;  3OGM A;  5BXD A;  5BXH A;  4W9H H;  4N9F 5;  4BKS B;  1QDW A;  2IHC A;  3ZTD B;  4JTA B;  3ZKJ B;  4W9L B;  4B95 B;  4U2M A;  1EOF A;  2OVQ A;  3C6N A;  3HU6 A;  3M5B A;  4W9K B;  4AJY C;  2C9W C;  2JZ3 C;  3BIM A;  3OHU A;  5BO4 C;  2P1O A;  4W9C B;  4APF A;  5H7G A;  5BXB A;  3I3N A;  4UYI A;  3WSO B;  3HTM A;  3OGL A;  3C6P A;  2Z8H A;  5LLI B;  2E32 B;  3C6O A;  5A15 A;  2IF5 A;  5JH5 B;  1LM8 C;  3OHV A;  2P1N A;  4U2N A;  1FQV B;  5DAD A;  2I2R A;  4EOZ A;  3ZUN B;  4JGH C;  1T1D A;  4W9H B;  4CXJ A;  3DCG B;  2R9R B;  5A6R A;  2IZV C;  4W9J B;  3L2O A;  1EXB E;  1NEX A;  4I6J C;  1R29 A;  2A79 B;  1QDV A;  1R28 A;  4CXT A;  4CXI A;  3LNM B;  5IBK A;  2PPI A;  3M4T A;  3M52 A;  5FTA A;  2OVR A;  2ASS A;  3V7D A;  4W9I B;  5HYW B;  2NN2 A;  5H7H A;  3KVT A;  4HXI A;  4UIJ A;  1HV2 A;  2VKP A;  4B9K B;  2YY9 A;  4U77 A; 
#chains in the Genus database with same CATH topology
 3HVE A;  1VCB B;  3B84 A;  4BGC A;  1A68 A;  3LUT B;  4W9D B;  4AP2 A;  1EOE A;  2VPK A;  4J8Z A;  4W9F B;  3DRZ A;  1DSX A;  2P1Q A;  4W9G B;  4B9K E;  1CS3 A;  1NN7 A;  3ZRC B;  1S1G A;  4W9E B;  2P1M A;  1P22 B;  2P1P A;  1LDK D;  4BKT B;  1R2B A;  2AST A;  3FKC A;  1LQB B;  5HZG C;  4CRH A;  2NZ0 B;  3M8V A;  1BUO A;  3ZTC B;  3MKS A;  2E31 B;  4JTC B;  3GA1 A;  2OVP A;  4WQO C;  4ZOU A;  1FS1 B;  2MA9 C;  3LBZ A;  5EUP A;  3ZNG B;  3ZRF B;  3HQI A;  1FS2 B;  3E4U A;  3OGK A;  2Q81 A;  1EOD A;  2FNJ C;  5DAF A;  3HVE B;  3DRY A;  4JTD B;  4AWJ B;  4CP3 A;  3OGM A;  5BXD A;  5BXH A;  4W9H H;  4N9F 5;  4BKS B;  1QDW A;  2IHC A;  3ZTD B;  4JTA B;  3ZKJ B;  4W9L B;  4B95 B;  4U2M A;  1EOF A;  2OVQ A;  3C6N A;  3HU6 A;  3M5B A;  4W9K B;  4AJY C;  2C9W C;  2JZ3 C;  3BIM A;  3OHU A;  5BO4 C;  2P1O A;  4W9C B;  4APF A;  5H7G A;  5BXB A;  3I3N A;  4UYI A;  3WSO B;  3HTM A;  3OGL A;  3C6P A;  2Z8H A;  5LLI B;  2E32 B;  3C6O A;  5A15 A;  2IF5 A;  5JH5 B;  1LM8 C;  3OHV A;  2P1N A;  4U2N A;  1FQV B;  5DAD A;  2I2R A;  4EOZ A;  3ZUN B;  4YY8 A;  4JGH C;  1T1D A;  4W9H B;  4CXJ A;  3DCG B;  2R9R B;  5A6R A;  2IZV C;  4W9J B;  3L2O A;  1EXB E;  1NEX A;  4I6J C;  1R29 A;  2A79 B;  1QDV A;  1R28 A;  4CXT A;  4CXI A;  3LNM B;  5IBK A;  2PPI A;  3M4T A;  3M52 A;  3DRX A;  5FTA A;  2OVR A;  2ASS A;  3V7D A;  4ZGC A;  4W9I B;  5HYW B;  2NN2 A;  5H7H A;  3KVT A;  4HXI A;  4UIJ A;  1HV2 A;  2VKP A;  4B9K B;  2YY9 A;  4U77 A; 
#chains in the Genus database with same CATH homology
 3HVE A;  1VCB B;  3B84 A;  4BGC A;  1A68 A;  3LUT B;  4W9D B;  4AP2 A;  1EOE A;  2VPK A;  4J8Z A;  4W9F B;  3DRZ A;  1DSX A;  2P1Q A;  4W9G B;  4B9K E;  1CS3 A;  1NN7 A;  3ZRC B;  1S1G A;  4W9E B;  2P1M A;  1P22 B;  2P1P A;  1LDK D;  4BKT B;  1R2B A;  2AST A;  3FKC A;  1LQB B;  5HZG C;  4CRH A;  2NZ0 B;  3M8V A;  1BUO A;  3ZTC B;  3MKS A;  2E31 B;  4JTC B;  3GA1 A;  2OVP A;  4WQO C;  4ZOU A;  1FS1 B;  2MA9 C;  3LBZ A;  5EUP A;  3ZNG B;  3ZRF B;  3HQI A;  1FS2 B;  3E4U A;  3OGK A;  2Q81 A;  1EOD A;  2FNJ C;  5DAF A;  3HVE B;  3DRY A;  4JTD B;  4AWJ B;  4CP3 A;  3OGM A;  5BXD A;  5BXH A;  4W9H H;  4N9F 5;  4BKS B;  1QDW A;  2IHC A;  3ZTD B;  4JTA B;  3ZKJ B;  4W9L B;  4B95 B;  4U2M A;  1EOF A;  2OVQ A;  3C6N A;  3HU6 A;  3M5B A;  4W9K B;  4AJY C;  2C9W C;  2JZ3 C;  3BIM A;  3OHU A;  5BO4 C;  2P1O A;  4W9C B;  4APF A;  5H7G A;  5BXB A;  3I3N A;  4UYI A;  3WSO B;  3HTM A;  3OGL A;  3C6P A;  2Z8H A;  5LLI B;  2E32 B;  3C6O A;  5A15 A;  2IF5 A;  5JH5 B;  1LM8 C;  3OHV A;  2P1N A;  4U2N A;  1FQV B;  5DAD A;  2I2R A;  4EOZ A;  3ZUN B;  4YY8 A;  4JGH C;  1T1D A;  4W9H B;  4CXJ A;  3DCG B;  2R9R B;  5A6R A;  2IZV C;  4W9J B;  3L2O A;  1EXB E;  1NEX A;  4I6J C;  1R29 A;  2A79 B;  1QDV A;  1R28 A;  4CXT A;  4CXI A;  3LNM B;  5IBK A;  2PPI A;  3M4T A;  3M52 A;  3DRX A;  5FTA A;  2OVR A;  2ASS A;  3V7D A;  4ZGC A;  4W9I B;  5HYW B;  2NN2 A;  5H7H A;  3KVT A;  4HXI A;  4UIJ A;  1HV2 A;  2VKP A;  4B9K B;  2YY9 A;  4U77 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1CS3A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN