1EODA

Crystal structure of the n136d mutant of a shaker t1 domain
Total Genus 34
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
100
structure length
100
Chain Sequence
ERVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFYQSGGRLRRPVDVPLDVFSEEIKFYELGENAFERYREDEGF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
source organism Aplysia californica
publication title Voltage dependent activation of potassium channels is coupled to T1 domain structure.
pubmed doi rcsb
molecule keywords POTASSIUM CHANNEL KV1.1
total genus 34
structure length 100
sequence length 100
ec nomenclature
pdb deposition date 2000-03-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02214 BTB_2 BTB/POZ domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.710.10 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1; Chain A Potassium Channel Kv1.1; Chain A 1eodA00
4AJYC 3DRZA 3FKCA 1R29A 1EODA 3C6PA 1T1DA 3HU6A 1QDWA 4B95B 2P1QA 4JTDB 4B9KB 2A79B 2VPKA 1FS1B 1R2BA 2NZ0B 5FTAA 4CRHA 5BXDA 2YY9A 1LDKD 4HXIA 4W9EB 3M5BA 3ZKJB 2I2RA 3E4UA 3V7DA 1FQVB 4W9CB 3ZTCB 3HVEB 3ZUNB 5HZGC 5LLIB 3C6NA 3I3NA 3ZRFB 3LNMB 2PPIA 3MKSA 2P1NA 4I6JC 5IBKA 1NEXA 5EUPA 3HTMA 1LQBB 5BXHA 3GA1A 3ZTDB 2IHCA 5DADA 4U2MA 4W9JB 3ZRCB 1A68A 4W9HH 1S1GA 4UIJA 3B84A 1BUOA 1VCBB 3ZNGB 4AP2A 3HVEA 2FNJC 2P1PA 4W9GB 4B9KE 2E32B 5H7HA 4U2NA 4CXIA 4W9LB 4BKTB 5H7GA 1QDVA 2ASSA 2MA9C 3M52A 2IZVC 4CXTA 2JZ3C 5BXBA 2R9RB 4JTAB 2VKPA 1DSXA 2ASTA 4EOZA 2NN2A 2OVPA 2Q81A 2P1OA 3WSOB 4AWJB 4W9FB 3OGLA 4ZOUA 4BGCA 4W9KB 4W9IB 4JTCB 5JH5B 4N9F5 1EOEA 2OVQA 2C9WC 3M4TA 4WQOC 1EOFA 3LUTB 4CP3A 4JGHC 3M8VA 2E31B 1CS3A 5A6RA 3DCGB 5BO4C 4CXJA 3KVTA 1R28A 4BKSB 1EXBE 2OVRA 2IF5A 1NN7A 4J8ZA 4APFA 3L2OA 4U77A 4W9DB 3LBZA 1P22B 3OHUA 4UYIA 3OGMA 1LM8C 2Z8HA 3BIMA 1FS2B 5A15A 4W9HB 3OHVA 2P1MA 1HV2A 5HYWB 3OGKA 3C6OA 3HQIA 5DAFA
chains in the Genus database with same CATH superfamily
4AJYC 3DRZA 3FKCA 1R29A 1EODA 3C6PA 1T1DA 3HU6A 1QDWA 4B95B 2P1QA 4JTDB 4B9KB 2A79B 2VPKA 1FS1B 1R2BA 2NZ0B 5FTAA 4ZGCA 4CRHA 5BXDA 2YY9A 1LDKD 4HXIA 4W9EB 3M5BA 3ZKJB 2I2RA 3E4UA 3V7DA 1FQVB 4W9CB 3ZTCB 3HVEB 3ZUNB 5HZGC 5LLIB 3C6NA 3I3NA 3ZRFB 3LNMB 2PPIA 3MKSA 2P1NA 4I6JC 5IBKA 1NEXA 5EUPA 3HTMA 1LQBB 5BXHA 3GA1A 3ZTDB 2IHCA 5DADA 4U2MA 4W9JB 3ZRCB 1A68A 4W9HH 1S1GA 4UIJA 3B84A 1BUOA 1VCBB 3ZNGB 4AP2A 3DRYA 3HVEA 2FNJC 2P1PA 4W9GB 4B9KE 2E32B 5H7HA 4U2NA 4CXIA 4W9LB 4BKTB 5H7GA 1QDVA 2ASSA 3DRXA 2MA9C 3M52A 2IZVC 4CXTA 2JZ3C 5BXBA 2R9RB 4JTAB 2VKPA 1DSXA 2ASTA 4EOZA 2NN2A 2OVPA 2Q81A 2P1OA 3WSOB 4AWJB 4W9FB 3OGLA 4ZOUA 4BGCA 4W9KB 4W9IB 4JTCB 5JH5B 4N9F5 1EOEA 4YY8A 2OVQA 2C9WC 3M4TA 4WQOC 1EOFA 3LUTB 4CP3A 4JGHC 3M8VA 2E31B 1CS3A 5A6RA 3DCGB 5BO4C 4CXJA 3KVTA 1R28A 4BKSB 1EXBE 2OVRA 2IF5A 1NN7A 4J8ZA 4APFA 3L2OA 4U77A 4W9DB 3LBZA 1P22B 3OHUA 4UYIA 3OGMA 1LM8C 2Z8HA 3BIMA 1FS2B 5A15A 4W9HB 3OHVA 2P1MA 1HV2A 5HYWB 3OGKA 3C6OA 3HQIA 5DAFA
chains in the Genus database with same CATH topology
4AJYC 3DRZA 3FKCA 1R29A 1EODA 3C6PA 1T1DA 3HU6A 1QDWA 4B95B 2P1QA 4JTDB 4B9KB 2A79B 2VPKA 1FS1B 1R2BA 2NZ0B 5FTAA 4ZGCA 4CRHA 5BXDA 2YY9A 1LDKD 4HXIA 4W9EB 3M5BA 3ZKJB 2I2RA 3E4UA 3V7DA 1FQVB 4W9CB 3ZTCB 3HVEB 3ZUNB 5HZGC 5LLIB 3C6NA 3I3NA 3ZRFB 3LNMB 2PPIA 3MKSA 2P1NA 4I6JC 5IBKA 1NEXA 5EUPA 3HTMA 1LQBB 5BXHA 3GA1A 3ZTDB 2IHCA 5DADA 4U2MA 4W9JB 3ZRCB 1A68A 4W9HH 1S1GA 4UIJA 3B84A 1BUOA 1VCBB 3ZNGB 4AP2A 3DRYA 3HVEA 2FNJC 2P1PA 4W9GB 4B9KE 2E32B 5H7HA 4U2NA 4CXIA 4W9LB 4BKTB 5H7GA 1QDVA 2ASSA 3DRXA 2MA9C 3M52A 2IZVC 4CXTA 2JZ3C 5BXBA 2R9RB 4JTAB 2VKPA 1DSXA 2ASTA 4EOZA 2NN2A 2OVPA 2Q81A 2P1OA 3WSOB 4AWJB 4W9FB 3OGLA 4ZOUA 4BGCA 4W9KB 4W9IB 4JTCB 5JH5B 4N9F5 1EOEA 4YY8A 2OVQA 2C9WC 3M4TA 4WQOC 1EOFA 3LUTB 4CP3A 4JGHC 3M8VA 2E31B 1CS3A 5A6RA 3DCGB 5BO4C 4CXJA 3KVTA 1R28A 4BKSB 1EXBE 2OVRA 2IF5A 1NN7A 4J8ZA 4APFA 3L2OA 4U77A 4W9DB 3LBZA 1P22B 3OHUA 4UYIA 3OGMA 1LM8C 2Z8HA 3BIMA 1FS2B 5A15A 4W9HB 3OHVA 2P1MA 1HV2A 5HYWB 3OGKA 3C6OA 3HQIA 5DAFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AJY C;  3DRZ A;  3FKC A;  1R29 A;  1EOD A;  3C6P A;  1T1D A;  3HU6 A;  1QDW A;  4B95 B;  2P1Q A;  4JTD B;  4B9K B;  2A79 B;  2VPK A;  1FS1 B;  1R2B A;  2NZ0 B;  5FTA A;  4CRH A;  5BXD A;  2YY9 A;  1LDK D;  4HXI A;  4W9E B;  3M5B A;  3ZKJ B;  2I2R A;  3E4U A;  3V7D A;  1FQV B;  4W9C B;  3ZTC B;  3HVE B;  3ZUN B;  5HZG C;  5LLI B;  3C6N A;  3I3N A;  3ZRF B;  3LNM B;  2PPI A;  3MKS A;  2P1N A;  4I6J C;  5IBK A;  1NEX A;  5EUP A;  3HTM A;  1LQB B;  5BXH A;  3GA1 A;  3ZTD B;  2IHC A;  5DAD A;  4U2M A;  4W9J B;  3ZRC B;  1A68 A;  4W9H H;  1S1G A;  4UIJ A;  3B84 A;  1BUO A;  1VCB B;  3ZNG B;  4AP2 A;  3HVE A;  2FNJ C;  2P1P A;  4W9G B;  4B9K E;  2E32 B;  5H7H A;  4U2N A;  4CXI A;  4W9L B;  4BKT B;  5H7G A;  1QDV A;  2ASS A;  2MA9 C;  3M52 A;  2IZV C;  4CXT A;  2JZ3 C;  5BXB A;  2R9R B;  4JTA B;  2VKP A;  1DSX A;  2AST A;  4EOZ A;  2NN2 A;  2OVP A;  2Q81 A;  2P1O A;  3WSO B;  4AWJ B;  4W9F B;  3OGL A;  4ZOU A;  4BGC A;  4W9K B;  4W9I B;  4JTC B;  5JH5 B;  4N9F 5;  1EOE A;  2OVQ A;  2C9W C;  3M4T A;  4WQO C;  1EOF A;  3LUT B;  4CP3 A;  4JGH C;  3M8V A;  2E31 B;  1CS3 A;  5A6R A;  3DCG B;  5BO4 C;  4CXJ A;  3KVT A;  1R28 A;  4BKS B;  1EXB E;  2OVR A;  2IF5 A;  1NN7 A;  4J8Z A;  4APF A;  3L2O A;  4U77 A;  4W9D B;  3LBZ A;  1P22 B;  3OHU A;  4UYI A;  3OGM A;  1LM8 C;  2Z8H A;  3BIM A;  1FS2 B;  5A15 A;  4W9H B;  3OHV A;  2P1M A;  1HV2 A;  5HYW B;  3OGK A;  3C6O A;  3HQI A;  5DAF A; 
#chains in the Genus database with same CATH topology
 4AJY C;  3DRZ A;  3FKC A;  1R29 A;  1EOD A;  3C6P A;  1T1D A;  3HU6 A;  1QDW A;  4B95 B;  2P1Q A;  4JTD B;  4B9K B;  2A79 B;  2VPK A;  1FS1 B;  1R2B A;  2NZ0 B;  5FTA A;  4ZGC A;  4CRH A;  5BXD A;  2YY9 A;  1LDK D;  4HXI A;  4W9E B;  3M5B A;  3ZKJ B;  2I2R A;  3E4U A;  3V7D A;  1FQV B;  4W9C B;  3ZTC B;  3HVE B;  3ZUN B;  5HZG C;  5LLI B;  3C6N A;  3I3N A;  3ZRF B;  3LNM B;  2PPI A;  3MKS A;  2P1N A;  4I6J C;  5IBK A;  1NEX A;  5EUP A;  3HTM A;  1LQB B;  5BXH A;  3GA1 A;  3ZTD B;  2IHC A;  5DAD A;  4U2M A;  4W9J B;  3ZRC B;  1A68 A;  4W9H H;  1S1G A;  4UIJ A;  3B84 A;  1BUO A;  1VCB B;  3ZNG B;  4AP2 A;  3DRY A;  3HVE A;  2FNJ C;  2P1P A;  4W9G B;  4B9K E;  2E32 B;  5H7H A;  4U2N A;  4CXI A;  4W9L B;  4BKT B;  5H7G A;  1QDV A;  2ASS A;  3DRX A;  2MA9 C;  3M52 A;  2IZV C;  4CXT A;  2JZ3 C;  5BXB A;  2R9R B;  4JTA B;  2VKP A;  1DSX A;  2AST A;  4EOZ A;  2NN2 A;  2OVP A;  2Q81 A;  2P1O A;  3WSO B;  4AWJ B;  4W9F B;  3OGL A;  4ZOU A;  4BGC A;  4W9K B;  4W9I B;  4JTC B;  5JH5 B;  4N9F 5;  1EOE A;  4YY8 A;  2OVQ A;  2C9W C;  3M4T A;  4WQO C;  1EOF A;  3LUT B;  4CP3 A;  4JGH C;  3M8V A;  2E31 B;  1CS3 A;  5A6R A;  3DCG B;  5BO4 C;  4CXJ A;  3KVT A;  1R28 A;  4BKS B;  1EXB E;  2OVR A;  2IF5 A;  1NN7 A;  4J8Z A;  4APF A;  3L2O A;  4U77 A;  4W9D B;  3LBZ A;  1P22 B;  3OHU A;  4UYI A;  3OGM A;  1LM8 C;  2Z8H A;  3BIM A;  1FS2 B;  5A15 A;  4W9H B;  3OHV A;  2P1M A;  1HV2 A;  5HYW B;  3OGK A;  3C6O A;  3HQI A;  5DAF A; 
#chains in the Genus database with same CATH homology
 4AJY C;  3DRZ A;  3FKC A;  1R29 A;  1EOD A;  3C6P A;  1T1D A;  3HU6 A;  1QDW A;  4B95 B;  2P1Q A;  4JTD B;  4B9K B;  2A79 B;  2VPK A;  1FS1 B;  1R2B A;  2NZ0 B;  5FTA A;  4ZGC A;  4CRH A;  5BXD A;  2YY9 A;  1LDK D;  4HXI A;  4W9E B;  3M5B A;  3ZKJ B;  2I2R A;  3E4U A;  3V7D A;  1FQV B;  4W9C B;  3ZTC B;  3HVE B;  3ZUN B;  5HZG C;  5LLI B;  3C6N A;  3I3N A;  3ZRF B;  3LNM B;  2PPI A;  3MKS A;  2P1N A;  4I6J C;  5IBK A;  1NEX A;  5EUP A;  3HTM A;  1LQB B;  5BXH A;  3GA1 A;  3ZTD B;  2IHC A;  5DAD A;  4U2M A;  4W9J B;  3ZRC B;  1A68 A;  4W9H H;  1S1G A;  4UIJ A;  3B84 A;  1BUO A;  1VCB B;  3ZNG B;  4AP2 A;  3DRY A;  3HVE A;  2FNJ C;  2P1P A;  4W9G B;  4B9K E;  2E32 B;  5H7H A;  4U2N A;  4CXI A;  4W9L B;  4BKT B;  5H7G A;  1QDV A;  2ASS A;  3DRX A;  2MA9 C;  3M52 A;  2IZV C;  4CXT A;  2JZ3 C;  5BXB A;  2R9R B;  4JTA B;  2VKP A;  1DSX A;  2AST A;  4EOZ A;  2NN2 A;  2OVP A;  2Q81 A;  2P1O A;  3WSO B;  4AWJ B;  4W9F B;  3OGL A;  4ZOU A;  4BGC A;  4W9K B;  4W9I B;  4JTC B;  5JH5 B;  4N9F 5;  1EOE A;  4YY8 A;  2OVQ A;  2C9W C;  3M4T A;  4WQO C;  1EOF A;  3LUT B;  4CP3 A;  4JGH C;  3M8V A;  2E31 B;  1CS3 A;  5A6R A;  3DCG B;  5BO4 C;  4CXJ A;  3KVT A;  1R28 A;  4BKS B;  1EXB E;  2OVR A;  2IF5 A;  1NN7 A;  4J8Z A;  4APF A;  3L2O A;  4U77 A;  4W9D B;  3LBZ A;  1P22 B;  3OHU A;  4UYI A;  3OGM A;  1LM8 C;  2Z8H A;  3BIM A;  1FS2 B;  5A15 A;  4W9H B;  3OHV A;  2P1M A;  1HV2 A;  5HYW B;  3OGK A;  3C6O A;  3HQI A;  5DAF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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