1EOE | Genus

Total Genus 33

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	33
sequence length	100
structure length	100
Chain Sequence	ERVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFYQSGGRLRRPRNVPLDVFSEEIKFYELGENAFERYREDEGF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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Time for openFile(/file/5cfb1405eadac7b76fe95fca/pdb.gz): 1107 ms

reading 100 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

100 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 18 ms

Adding embedded #jmolscript: select ({0:99});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Membrane protein
source organism	Aplysia californica
publication title	Voltage dependent activation of potassium channels is coupled to T1 domain structure. pubmed doi rcsb
molecule keywords	POTASSIUM CHANNEL KV1.1
total genus	33
structure length	100
sequence length	100
ec nomenclature
pdb deposition date	2000-03-22

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF02214	BTB_2	BTB/POZ domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.710.10	Alpha Beta	2-Layer Sandwich	Potassium Channel Kv1.1; Chain A	Potassium Channel Kv1.1; Chain A	1eoeA00

4W9HB 5A6RA 4W9IB 4N9F5 3WSOB 2I2RA 3MKSA 1R2BA 4W9CB 1NEXA 3DCGB 4B95B 3HVEA 3OHUA 3LBZA 4UIJA 3V7DA 4B9KE 2P1NA 5DAFA 4W9LB 2IHCA 2VPKA 4W9DB 2A79B 3HQIA 4WQOC 2ASTA 2P1OA 2YY9A 1R29A 4AJYC 4BKSB 3ZTCB 3ZRFB 4B9KB 2FNJC 1FS1B 4CXTA 1P22B 2P1PA 2OVPA 3ZKJB 2OVRA 2IF5A 2R9RB 3ZTDB 3C6OA 1S1GA 2NN2A 2Q81A 4HXIA 3I3NA 3ZRCB 5IBKA 1QDVA 4JTAB 3M5BA 2OVQA 4ZOUA 4CRHA 1LM8C 4U77A 1HV2A 3HVEB 1NN7A 4JGHC 4W9JB 2E31B 5LLIB 5A15A 3C6PA 2JZ3C 4UYIA 4BKTB 5BO4C 1DSXA 3B84A 4I6JC 2MA9C 3BIMA 3LUTB 1FQVB 5H7HA 4W9GB 3L2OA 3M52A 3ZNGB 5EUPA 4AP2A 4W9FB 1CS3A 4EOZA 2ASSA 4JTDB 1QDWA 5BXDA 3OHVA 2PPIA 4U2MA 5BXHA 4CXIA 2VKPA 5HZGC 3OGLA 3GA1A 1FS2B 3LNMB 3HU6A 3OGMA 4BGCA 1LDKD 5BXBA 1R28A 4CP3A 3DRZA 4APFA 2Z8HA 2E32B 1EOEA 3E4UA 3HTMA 3M4TA 3FKCA 2NZ0B 4CXJA 4W9HH 3KVTA 1VCBB 4AWJB 4W9KB 1T1DA 5HYWB 5FTAA 1EXBE 3C6NA 5H7GA 2P1MA 4W9EB 3OGKA 4J8ZA 1LQBB 2IZVC 1A68A 5DADA 1EODA 2C9WC 1EOFA 2P1QA 4JTCB 3ZUNB 3M8VA 5JH5B 1BUOA 4U2NA
chains in the Genus database with same CATH superfamily

4W9HB 5A6RA 4W9IB 4N9F5 3WSOB 2I2RA 3MKSA 1R2BA 4W9CB 1NEXA 3DCGB 4B95B 3HVEA 3OHUA 3LBZA 4UIJA 3V7DA 4B9KE 2P1NA 5DAFA 4W9LB 2IHCA 2VPKA 4W9DB 2A79B 3HQIA 4WQOC 2ASTA 2P1OA 2YY9A 1R29A 4AJYC 4BKSB 3ZTCB 3ZRFB 4B9KB 2FNJC 1FS1B 4CXTA 1P22B 2P1PA 2OVPA 3ZKJB 2OVRA 2IF5A 2R9RB 3ZTDB 3C6OA 1S1GA 2NN2A 2Q81A 4HXIA 3I3NA 3ZRCB 5IBKA 1QDVA 4JTAB 3M5BA 2OVQA 4ZOUA 4CRHA 1LM8C 4U77A 1HV2A 3HVEB 1NN7A 4JGHC 4W9JB 2E31B 5LLIB 5A15A 3C6PA 2JZ3C 4UYIA 4BKTB 5BO4C 3DRYA 1DSXA 3B84A 4I6JC 2MA9C 3BIMA 3LUTB 1FQVB 5H7HA 4W9GB 3L2OA 3M52A 3ZNGB 5EUPA 4AP2A 4W9FB 1CS3A 4EOZA 2ASSA 4JTDB 1QDWA 5BXDA 3OHVA 2PPIA 4U2MA 5BXHA 4CXIA 2VKPA 5HZGC 3OGLA 3GA1A 1FS2B 3LNMB 3HU6A 3OGMA 4BGCA 4ZGCA 1LDKD 5BXBA 1R28A 4CP3A 3DRZA 4APFA 2Z8HA 2E32B 1EOEA 3E4UA 3HTMA 3M4TA 3FKCA 2NZ0B 4CXJA 4W9HH 3KVTA 1VCBB 4AWJB 4W9KB 4YY8A 1T1DA 5HYWB 5FTAA 1EXBE 3C6NA 5H7GA 2P1MA 4W9EB 3OGKA 4J8ZA 1LQBB 2IZVC 1A68A 5DADA 3DRXA 1EODA 2C9WC 1EOFA 2P1QA 4JTCB 3ZUNB 3M8VA 5JH5B 1BUOA 4U2NA
chains in the Genus database with same CATH topology

4W9HB 5A6RA 4W9IB 4N9F5 3WSOB 2I2RA 3MKSA 1R2BA 4W9CB 1NEXA 3DCGB 4B95B 3HVEA 3OHUA 3LBZA 4UIJA 3V7DA 4B9KE 2P1NA 5DAFA 4W9LB 2IHCA 2VPKA 4W9DB 2A79B 3HQIA 4WQOC 2ASTA 2P1OA 2YY9A 1R29A 4AJYC 4BKSB 3ZTCB 3ZRFB 4B9KB 2FNJC 1FS1B 4CXTA 1P22B 2P1PA 2OVPA 3ZKJB 2OVRA 2IF5A 2R9RB 3ZTDB 3C6OA 1S1GA 2NN2A 2Q81A 4HXIA 3I3NA 3ZRCB 5IBKA 1QDVA 4JTAB 3M5BA 2OVQA 4ZOUA 4CRHA 1LM8C 4U77A 1HV2A 3HVEB 1NN7A 4JGHC 4W9JB 2E31B 5LLIB 5A15A 3C6PA 2JZ3C 4UYIA 4BKTB 5BO4C 3DRYA 1DSXA 3B84A 4I6JC 2MA9C 3BIMA 3LUTB 1FQVB 5H7HA 4W9GB 3L2OA 3M52A 3ZNGB 5EUPA 4AP2A 4W9FB 1CS3A 4EOZA 2ASSA 4JTDB 1QDWA 5BXDA 3OHVA 2PPIA 4U2MA 5BXHA 4CXIA 2VKPA 5HZGC 3OGLA 3GA1A 1FS2B 3LNMB 3HU6A 3OGMA 4BGCA 4ZGCA 1LDKD 5BXBA 1R28A 4CP3A 3DRZA 4APFA 2Z8HA 2E32B 1EOEA 3E4UA 3HTMA 3M4TA 3FKCA 2NZ0B 4CXJA 4W9HH 3KVTA 1VCBB 4AWJB 4W9KB 4YY8A 1T1DA 5HYWB 5FTAA 1EXBE 3C6NA 5H7GA 2P1MA 4W9EB 3OGKA 4J8ZA 1LQBB 2IZVC 1A68A 5DADA 3DRXA 1EODA 2C9WC 1EOFA 2P1QA 4JTCB 3ZUNB 3M8VA 5JH5B 1BUOA 4U2NA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4W9H B;  5A6R A;  4W9I B;  4N9F 5;  3WSO B;  2I2R A;  3MKS A;  1R2B A;  4W9C B;  1NEX A;  3DCG B;  4B95 B;  3HVE A;  3OHU A;  3LBZ A;  4UIJ A;  3V7D A;  4B9K E;  2P1N A;  5DAF A;  4W9L B;  2IHC A;  2VPK A;  4W9D B;  2A79 B;  3HQI A;  4WQO C;  2AST A;  2P1O A;  2YY9 A;  1R29 A;  4AJY C;  4BKS B;  3ZTC B;  3ZRF B;  4B9K B;  2FNJ C;  1FS1 B;  4CXT A;  1P22 B;  2P1P A;  2OVP A;  3ZKJ B;  2OVR A;  2IF5 A;  2R9R B;  3ZTD B;  3C6O A;  1S1G A;  2NN2 A;  2Q81 A;  4HXI A;  3I3N A;  3ZRC B;  5IBK A;  1QDV A;  4JTA B;  3M5B A;  2OVQ A;  4ZOU A;  4CRH A;  1LM8 C;  4U77 A;  1HV2 A;  3HVE B;  1NN7 A;  4JGH C;  4W9J B;  2E31 B;  5LLI B;  5A15 A;  3C6P A;  2JZ3 C;  4UYI A;  4BKT B;  5BO4 C;  1DSX A;  3B84 A;  4I6J C;  2MA9 C;  3BIM A;  3LUT B;  1FQV B;  5H7H A;  4W9G B;  3L2O A;  3M52 A;  3ZNG B;  5EUP A;  4AP2 A;  4W9F B;  1CS3 A;  4EOZ A;  2ASS A;  4JTD B;  1QDW A;  5BXD A;  3OHV A;  2PPI A;  4U2M A;  5BXH A;  4CXI A;  2VKP A;  5HZG C;  3OGL A;  3GA1 A;  1FS2 B;  3LNM B;  3HU6 A;  3OGM A;  4BGC A;  1LDK D;  5BXB A;  1R28 A;  4CP3 A;  3DRZ A;  4APF A;  2Z8H A;  2E32 B;  1EOE A;  3E4U A;  3HTM A;  3M4T A;  3FKC A;  2NZ0 B;  4CXJ A;  4W9H H;  3KVT A;  1VCB B;  4AWJ B;  4W9K B;  1T1D A;  5HYW B;  5FTA A;  1EXB E;  3C6N A;  5H7G A;  2P1M A;  4W9E B;  3OGK A;  4J8Z A;  1LQB B;  2IZV C;  1A68 A;  5DAD A;  1EOD A;  2C9W C;  1EOF A;  2P1Q A;  4JTC B;  3ZUN B;  3M8V A;  5JH5 B;  1BUO A;  4U2N A; 
#chains in the Genus database with same CATH topology
 4W9H B;  5A6R A;  4W9I B;  4N9F 5;  3WSO B;  2I2R A;  3MKS A;  1R2B A;  4W9C B;  1NEX A;  3DCG B;  4B95 B;  3HVE A;  3OHU A;  3LBZ A;  4UIJ A;  3V7D A;  4B9K E;  2P1N A;  5DAF A;  4W9L B;  2IHC A;  2VPK A;  4W9D B;  2A79 B;  3HQI A;  4WQO C;  2AST A;  2P1O A;  2YY9 A;  1R29 A;  4AJY C;  4BKS B;  3ZTC B;  3ZRF B;  4B9K B;  2FNJ C;  1FS1 B;  4CXT A;  1P22 B;  2P1P A;  2OVP A;  3ZKJ B;  2OVR A;  2IF5 A;  2R9R B;  3ZTD B;  3C6O A;  1S1G A;  2NN2 A;  2Q81 A;  4HXI A;  3I3N A;  3ZRC B;  5IBK A;  1QDV A;  4JTA B;  3M5B A;  2OVQ A;  4ZOU A;  4CRH A;  1LM8 C;  4U77 A;  1HV2 A;  3HVE B;  1NN7 A;  4JGH C;  4W9J B;  2E31 B;  5LLI B;  5A15 A;  3C6P A;  2JZ3 C;  4UYI A;  4BKT B;  5BO4 C;  3DRY A;  1DSX A;  3B84 A;  4I6J C;  2MA9 C;  3BIM A;  3LUT B;  1FQV B;  5H7H A;  4W9G B;  3L2O A;  3M52 A;  3ZNG B;  5EUP A;  4AP2 A;  4W9F B;  1CS3 A;  4EOZ A;  2ASS A;  4JTD B;  1QDW A;  5BXD A;  3OHV A;  2PPI A;  4U2M A;  5BXH A;  4CXI A;  2VKP A;  5HZG C;  3OGL A;  3GA1 A;  1FS2 B;  3LNM B;  3HU6 A;  3OGM A;  4BGC A;  4ZGC A;  1LDK D;  5BXB A;  1R28 A;  4CP3 A;  3DRZ A;  4APF A;  2Z8H A;  2E32 B;  1EOE A;  3E4U A;  3HTM A;  3M4T A;  3FKC A;  2NZ0 B;  4CXJ A;  4W9H H;  3KVT A;  1VCB B;  4AWJ B;  4W9K B;  4YY8 A;  1T1D A;  5HYW B;  5FTA A;  1EXB E;  3C6N A;  5H7G A;  2P1M A;  4W9E B;  3OGK A;  4J8Z A;  1LQB B;  2IZV C;  1A68 A;  5DAD A;  3DRX A;  1EOD A;  2C9W C;  1EOF A;  2P1Q A;  4JTC B;  3ZUN B;  3M8V A;  5JH5 B;  1BUO A;  4U2N A; 
#chains in the Genus database with same CATH homology
 4W9H B;  5A6R A;  4W9I B;  4N9F 5;  3WSO B;  2I2R A;  3MKS A;  1R2B A;  4W9C B;  1NEX A;  3DCG B;  4B95 B;  3HVE A;  3OHU A;  3LBZ A;  4UIJ A;  3V7D A;  4B9K E;  2P1N A;  5DAF A;  4W9L B;  2IHC A;  2VPK A;  4W9D B;  2A79 B;  3HQI A;  4WQO C;  2AST A;  2P1O A;  2YY9 A;  1R29 A;  4AJY C;  4BKS B;  3ZTC B;  3ZRF B;  4B9K B;  2FNJ C;  1FS1 B;  4CXT A;  1P22 B;  2P1P A;  2OVP A;  3ZKJ B;  2OVR A;  2IF5 A;  2R9R B;  3ZTD B;  3C6O A;  1S1G A;  2NN2 A;  2Q81 A;  4HXI A;  3I3N A;  3ZRC B;  5IBK A;  1QDV A;  4JTA B;  3M5B A;  2OVQ A;  4ZOU A;  4CRH A;  1LM8 C;  4U77 A;  1HV2 A;  3HVE B;  1NN7 A;  4JGH C;  4W9J B;  2E31 B;  5LLI B;  5A15 A;  3C6P A;  2JZ3 C;  4UYI A;  4BKT B;  5BO4 C;  3DRY A;  1DSX A;  3B84 A;  4I6J C;  2MA9 C;  3BIM A;  3LUT B;  1FQV B;  5H7H A;  4W9G B;  3L2O A;  3M52 A;  3ZNG B;  5EUP A;  4AP2 A;  4W9F B;  1CS3 A;  4EOZ A;  2ASS A;  4JTD B;  1QDW A;  5BXD A;  3OHV A;  2PPI A;  4U2M A;  5BXH A;  4CXI A;  2VKP A;  5HZG C;  3OGL A;  3GA1 A;  1FS2 B;  3LNM B;  3HU6 A;  3OGM A;  4BGC A;  4ZGC A;  1LDK D;  5BXB A;  1R28 A;  4CP3 A;  3DRZ A;  4APF A;  2Z8H A;  2E32 B;  1EOE A;  3E4U A;  3HTM A;  3M4T A;  3FKC A;  2NZ0 B;  4CXJ A;  4W9H H;  3KVT A;  1VCB B;  4AWJ B;  4W9K B;  4YY8 A;  1T1D A;  5HYW B;  5FTA A;  1EXB E;  3C6N A;  5H7G A;  2P1M A;  4W9E B;  3OGK A;  4J8Z A;  1LQB B;  2IZV C;  1A68 A;  5DAD A;  3DRX A;  1EOD A;  2C9W C;  1EOF A;  2P1Q A;  4JTC B;  3ZUN B;  3M8V A;  5JH5 B;  1BUO A;  4U2N A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1EOEA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations