1FS1 | Genus

Total Genus 44

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	44
sequence length	133
structure length	116
Chain Sequence	PSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDPVPLPNVNAAILKKVIQWCTHHKDDPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFN

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Ligase
source organism	Homo sapiens
publication title	Insights into SCF ubiquitin ligases from the structure of the Skp1-Skp2 complex. pubmed doi rcsb
molecule keywords	CYCLIN A/CDK2-ASSOCIATED P19
total genus	44
structure length	116
sequence length	133
chains with identical sequence	D
ec nomenclature
pdb deposition date	2000-09-08

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
B	PF03931	Skp1_POZ	Skp1 family, tetramerisation domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.710.10	Alpha Beta	2-Layer Sandwich	Potassium Channel Kv1.1; Chain A	Potassium Channel Kv1.1; Chain A	1fs1B00

1LM8C 2MA9C 4W9GB 4BGCA 4B95B 1LDKD 3DCGB 5EUPA 3OHVA 5BXHA 3B84A 3OHUA 1QDWA 2R9RB 4BKSB 4CXTA 1A68A 1EOEA 4N9F5 2P1OA 4W9HH 4W9DB 1R28A 3ZNGB 2IF5A 4W9LB 1LQBB 3V7DA 2E31B 3DRZA 2ASSA 4J8ZA 4I6JC 4JGHC 2YY9A 3C6PA 3WSOB 3OGLA 4CRHA 1R29A 4ZOUA 3OGKA 4U77A 4CXJA 2Q81A 4B9KB 2FNJC 1EOFA 2P1QA 3ZRCB 4AJYC 5FTAA 4W9KB 5JH5B 3C6OA 1CS3A 4W9JB 5BXBA 4W9FB 1R2BA 4AWJB 3GA1A 5H7GA 5HZGC 3C6NA 4CXIA 3ZRFB 2OVPA 3FKCA 1FS2B 4UYIA 4U2NA 1P22B 4U2MA 2C9WC 2IHCA 5BO4C 2NZ0B 1DSXA 1QDVA 4W9EB 3LNMB 2E32B 3HU6A 1S1GA 5IBKA 1EODA 2OVQA 2A79B 3L2OA 2P1NA 4JTCB 2OVRA 4JTDB 4W9CB 3LBZA 3M4TA 2I2RA 5A6RA 5LLIB 3OGMA 4CP3A 4B9KE 4JTAB 4UIJA 1NEXA 1FQVB 2VKPA 3KVTA 1VCBB 3HVEA 2ASTA 4W9IB 1NN7A 3MKSA 4AP2A 1T1DA 1FS1B 5DADA 3ZUNB 1EXBE 2P1PA 2VPKA 3E4UA 5A15A 4WQOC 3ZTDB 3M8VA 2P1MA 4EOZA 2NN2A 3HQIA 4W9HB 4HXIA 2IZVC 3LUTB 4APFA 4BKTB 3BIMA 3HTMA 5HYWB 3M52A 5BXDA 5H7HA 1HV2A 3M5BA 5DAFA 3ZKJB 1BUOA 3I3NA 3ZTCB 2JZ3C 2Z8HA 3HVEB 2PPIA
chains in the Genus database with same CATH superfamily

1LM8C 2MA9C 4W9GB 4BGCA 4B95B 1LDKD 3DCGB 5EUPA 3OHVA 5BXHA 3B84A 3OHUA 1QDWA 2R9RB 4BKSB 4CXTA 1A68A 1EOEA 4N9F5 2P1OA 4W9HH 4W9DB 1R28A 3ZNGB 2IF5A 4W9LB 1LQBB 3V7DA 2E31B 3DRZA 2ASSA 4J8ZA 4I6JC 4JGHC 2YY9A 3C6PA 3WSOB 3OGLA 4CRHA 1R29A 4ZOUA 3OGKA 4U77A 4CXJA 2Q81A 4B9KB 2FNJC 1EOFA 2P1QA 3ZRCB 4AJYC 5FTAA 4W9KB 5JH5B 3C6OA 1CS3A 4ZGCA 4W9JB 5BXBA 3DRYA 4W9FB 1R2BA 4AWJB 3GA1A 4YY8A 5H7GA 5HZGC 3C6NA 4CXIA 3ZRFB 2OVPA 3FKCA 1FS2B 4UYIA 4U2NA 1P22B 4U2MA 2C9WC 2IHCA 5BO4C 2NZ0B 1DSXA 1QDVA 4W9EB 3LNMB 2E32B 3HU6A 1S1GA 5IBKA 1EODA 2OVQA 2A79B 3L2OA 2P1NA 4JTCB 2OVRA 4JTDB 4W9CB 3LBZA 3M4TA 2I2RA 5A6RA 5LLIB 3OGMA 4CP3A 4B9KE 4JTAB 4UIJA 1NEXA 1FQVB 2VKPA 3KVTA 1VCBB 3HVEA 2ASTA 4W9IB 1NN7A 3MKSA 4AP2A 1T1DA 1FS1B 5DADA 3ZUNB 1EXBE 2P1PA 2VPKA 3E4UA 5A15A 4WQOC 3ZTDB 3M8VA 2P1MA 4EOZA 2NN2A 3HQIA 4W9HB 4HXIA 2IZVC 3LUTB 4APFA 4BKTB 3BIMA 3HTMA 3DRXA 5HYWB 3M52A 5BXDA 5H7HA 1HV2A 3M5BA 5DAFA 3ZKJB 1BUOA 3I3NA 3ZTCB 2JZ3C 2Z8HA 3HVEB 2PPIA
chains in the Genus database with same CATH topology

1LM8C 2MA9C 4W9GB 4BGCA 4B95B 1LDKD 3DCGB 5EUPA 3OHVA 5BXHA 3B84A 3OHUA 1QDWA 2R9RB 4BKSB 4CXTA 1A68A 1EOEA 4N9F5 2P1OA 4W9HH 4W9DB 1R28A 3ZNGB 2IF5A 4W9LB 1LQBB 3V7DA 2E31B 3DRZA 2ASSA 4J8ZA 4I6JC 4JGHC 2YY9A 3C6PA 3WSOB 3OGLA 4CRHA 1R29A 4ZOUA 3OGKA 4U77A 4CXJA 2Q81A 4B9KB 2FNJC 1EOFA 2P1QA 3ZRCB 4AJYC 5FTAA 4W9KB 5JH5B 3C6OA 1CS3A 4ZGCA 4W9JB 5BXBA 3DRYA 4W9FB 1R2BA 4AWJB 3GA1A 4YY8A 5H7GA 5HZGC 3C6NA 4CXIA 3ZRFB 2OVPA 3FKCA 1FS2B 4UYIA 4U2NA 1P22B 4U2MA 2C9WC 2IHCA 5BO4C 2NZ0B 1DSXA 1QDVA 4W9EB 3LNMB 2E32B 3HU6A 1S1GA 5IBKA 1EODA 2OVQA 2A79B 3L2OA 2P1NA 4JTCB 2OVRA 4JTDB 4W9CB 3LBZA 3M4TA 2I2RA 5A6RA 5LLIB 3OGMA 4CP3A 4B9KE 4JTAB 4UIJA 1NEXA 1FQVB 2VKPA 3KVTA 1VCBB 3HVEA 2ASTA 4W9IB 1NN7A 3MKSA 4AP2A 1T1DA 1FS1B 5DADA 3ZUNB 1EXBE 2P1PA 2VPKA 3E4UA 5A15A 4WQOC 3ZTDB 3M8VA 2P1MA 4EOZA 2NN2A 3HQIA 4W9HB 4HXIA 2IZVC 3LUTB 4APFA 4BKTB 3BIMA 3HTMA 3DRXA 5HYWB 3M52A 5BXDA 5H7HA 1HV2A 3M5BA 5DAFA 3ZKJB 1BUOA 3I3NA 3ZTCB 2JZ3C 2Z8HA 3HVEB 2PPIA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1LM8 C;  2MA9 C;  4W9G B;  4BGC A;  4B95 B;  1LDK D;  3DCG B;  5EUP A;  3OHV A;  5BXH A;  3B84 A;  3OHU A;  1QDW A;  2R9R B;  4BKS B;  4CXT A;  1A68 A;  1EOE A;  4N9F 5;  2P1O A;  4W9H H;  4W9D B;  1R28 A;  3ZNG B;  2IF5 A;  4W9L B;  1LQB B;  3V7D A;  2E31 B;  3DRZ A;  2ASS A;  4J8Z A;  4I6J C;  4JGH C;  2YY9 A;  3C6P A;  3WSO B;  3OGL A;  4CRH A;  1R29 A;  4ZOU A;  3OGK A;  4U77 A;  4CXJ A;  2Q81 A;  4B9K B;  2FNJ C;  1EOF A;  2P1Q A;  3ZRC B;  4AJY C;  5FTA A;  4W9K B;  5JH5 B;  3C6O A;  1CS3 A;  4W9J B;  5BXB A;  4W9F B;  1R2B A;  4AWJ B;  3GA1 A;  5H7G A;  5HZG C;  3C6N A;  4CXI A;  3ZRF B;  2OVP A;  3FKC A;  1FS2 B;  4UYI A;  4U2N A;  1P22 B;  4U2M A;  2C9W C;  2IHC A;  5BO4 C;  2NZ0 B;  1DSX A;  1QDV A;  4W9E B;  3LNM B;  2E32 B;  3HU6 A;  1S1G A;  5IBK A;  1EOD A;  2OVQ A;  2A79 B;  3L2O A;  2P1N A;  4JTC B;  2OVR A;  4JTD B;  4W9C B;  3LBZ A;  3M4T A;  2I2R A;  5A6R A;  5LLI B;  3OGM A;  4CP3 A;  4B9K E;  4JTA B;  4UIJ A;  1NEX A;  1FQV B;  2VKP A;  3KVT A;  1VCB B;  3HVE A;  2AST A;  4W9I B;  1NN7 A;  3MKS A;  4AP2 A;  1T1D A;  1FS1 B;  5DAD A;  3ZUN B;  1EXB E;  2P1P A;  2VPK A;  3E4U A;  5A15 A;  4WQO C;  3ZTD B;  3M8V A;  2P1M A;  4EOZ A;  2NN2 A;  3HQI A;  4W9H B;  4HXI A;  2IZV C;  3LUT B;  4APF A;  4BKT B;  3BIM A;  3HTM A;  5HYW B;  3M52 A;  5BXD A;  5H7H A;  1HV2 A;  3M5B A;  5DAF A;  3ZKJ B;  1BUO A;  3I3N A;  3ZTC B;  2JZ3 C;  2Z8H A;  3HVE B;  2PPI A; 
#chains in the Genus database with same CATH topology
 1LM8 C;  2MA9 C;  4W9G B;  4BGC A;  4B95 B;  1LDK D;  3DCG B;  5EUP A;  3OHV A;  5BXH A;  3B84 A;  3OHU A;  1QDW A;  2R9R B;  4BKS B;  4CXT A;  1A68 A;  1EOE A;  4N9F 5;  2P1O A;  4W9H H;  4W9D B;  1R28 A;  3ZNG B;  2IF5 A;  4W9L B;  1LQB B;  3V7D A;  2E31 B;  3DRZ A;  2ASS A;  4J8Z A;  4I6J C;  4JGH C;  2YY9 A;  3C6P A;  3WSO B;  3OGL A;  4CRH A;  1R29 A;  4ZOU A;  3OGK A;  4U77 A;  4CXJ A;  2Q81 A;  4B9K B;  2FNJ C;  1EOF A;  2P1Q A;  3ZRC B;  4AJY C;  5FTA A;  4W9K B;  5JH5 B;  3C6O A;  1CS3 A;  4ZGC A;  4W9J B;  5BXB A;  3DRY A;  4W9F B;  1R2B A;  4AWJ B;  3GA1 A;  4YY8 A;  5H7G A;  5HZG C;  3C6N A;  4CXI A;  3ZRF B;  2OVP A;  3FKC A;  1FS2 B;  4UYI A;  4U2N A;  1P22 B;  4U2M A;  2C9W C;  2IHC A;  5BO4 C;  2NZ0 B;  1DSX A;  1QDV A;  4W9E B;  3LNM B;  2E32 B;  3HU6 A;  1S1G A;  5IBK A;  1EOD A;  2OVQ A;  2A79 B;  3L2O A;  2P1N A;  4JTC B;  2OVR A;  4JTD B;  4W9C B;  3LBZ A;  3M4T A;  2I2R A;  5A6R A;  5LLI B;  3OGM A;  4CP3 A;  4B9K E;  4JTA B;  4UIJ A;  1NEX A;  1FQV B;  2VKP A;  3KVT A;  1VCB B;  3HVE A;  2AST A;  4W9I B;  1NN7 A;  3MKS A;  4AP2 A;  1T1D A;  1FS1 B;  5DAD A;  3ZUN B;  1EXB E;  2P1P A;  2VPK A;  3E4U A;  5A15 A;  4WQO C;  3ZTD B;  3M8V A;  2P1M A;  4EOZ A;  2NN2 A;  3HQI A;  4W9H B;  4HXI A;  2IZV C;  3LUT B;  4APF A;  4BKT B;  3BIM A;  3HTM A;  3DRX A;  5HYW B;  3M52 A;  5BXD A;  5H7H A;  1HV2 A;  3M5B A;  5DAF A;  3ZKJ B;  1BUO A;  3I3N A;  3ZTC B;  2JZ3 C;  2Z8H A;  3HVE B;  2PPI A; 
#chains in the Genus database with same CATH homology
 1LM8 C;  2MA9 C;  4W9G B;  4BGC A;  4B95 B;  1LDK D;  3DCG B;  5EUP A;  3OHV A;  5BXH A;  3B84 A;  3OHU A;  1QDW A;  2R9R B;  4BKS B;  4CXT A;  1A68 A;  1EOE A;  4N9F 5;  2P1O A;  4W9H H;  4W9D B;  1R28 A;  3ZNG B;  2IF5 A;  4W9L B;  1LQB B;  3V7D A;  2E31 B;  3DRZ A;  2ASS A;  4J8Z A;  4I6J C;  4JGH C;  2YY9 A;  3C6P A;  3WSO B;  3OGL A;  4CRH A;  1R29 A;  4ZOU A;  3OGK A;  4U77 A;  4CXJ A;  2Q81 A;  4B9K B;  2FNJ C;  1EOF A;  2P1Q A;  3ZRC B;  4AJY C;  5FTA A;  4W9K B;  5JH5 B;  3C6O A;  1CS3 A;  4ZGC A;  4W9J B;  5BXB A;  3DRY A;  4W9F B;  1R2B A;  4AWJ B;  3GA1 A;  4YY8 A;  5H7G A;  5HZG C;  3C6N A;  4CXI A;  3ZRF B;  2OVP A;  3FKC A;  1FS2 B;  4UYI A;  4U2N A;  1P22 B;  4U2M A;  2C9W C;  2IHC A;  5BO4 C;  2NZ0 B;  1DSX A;  1QDV A;  4W9E B;  3LNM B;  2E32 B;  3HU6 A;  1S1G A;  5IBK A;  1EOD A;  2OVQ A;  2A79 B;  3L2O A;  2P1N A;  4JTC B;  2OVR A;  4JTD B;  4W9C B;  3LBZ A;  3M4T A;  2I2R A;  5A6R A;  5LLI B;  3OGM A;  4CP3 A;  4B9K E;  4JTA B;  4UIJ A;  1NEX A;  1FQV B;  2VKP A;  3KVT A;  1VCB B;  3HVE A;  2AST A;  4W9I B;  1NN7 A;  3MKS A;  4AP2 A;  1T1D A;  1FS1 B;  5DAD A;  3ZUN B;  1EXB E;  2P1P A;  2VPK A;  3E4U A;  5A15 A;  4WQO C;  3ZTD B;  3M8V A;  2P1M A;  4EOZ A;  2NN2 A;  3HQI A;  4W9H B;  4HXI A;  2IZV C;  3LUT B;  4APF A;  4BKT B;  3BIM A;  3HTM A;  3DRX A;  5HYW B;  3M52 A;  5BXD A;  5H7H A;  1HV2 A;  3M5B A;  5DAF A;  3ZKJ B;  1BUO A;  3I3N A;  3ZTC B;  2JZ3 C;  2Z8H A;  3HVE B;  2PPI A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1FS1B

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations