1NEXA

Crystal structure of scskp1-sccdc4-cpd peptide complex
Total Genus 39

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
154
structure length
129
Chain Sequence
SNVVLVSGEGERFTVDKKIAERSLLLKNYLIVMPVPNVRSSVLQKVIEWAEHHRDSNFPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
AH2 (27-32)EMPTYS1 (5-9)TI1 (10-13)S2 (15-19)AH1 (20-24)TVIII1 (24-27)AH3 (84-97)TI2 (97-100)AH4 (118-124)O1 (124-126)TII1 (79-82)Updating...
connected with : NaN
molecule tags Ligase, cell cycle
source organism Saccharomyces cerevisiae
publication title Structural Basis for Phosphodependent Substrate Selection and Orientation by the SCFCdc4 Ubiquitin Ligase
pubmed doi rcsb
molecule keywords Centromere DNA-binding protein complex CBF3 subunit D
total genus 39
structure length 129
sequence length 154
chains with identical sequence C
ec nomenclature
pdb deposition date 2002-12-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01466 Skp1 Skp1 family, dimerisation domain
A PF03931 Skp1_POZ Skp1 family, tetramerisation domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.710.10 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1; Chain A Potassium Channel Kv1.1; Chain A 1nexA00
3M4TA 4W9FB 3HTMA 4UIJA 2P1OA 1EOEA 3V7DA 3LUTB 5HYWB 3B84A 5H7GA 3ZKJB 2P1MA 3FKCA 2P1QA 2ASTA 3HVEB 4UYIA 1T1DA 5JH5B 2OVQA 5FTAA 5DADA 4I6JC 5BXBA 1HV2A 2YY9A 4EOZA 1NEXA 4CRHA 4W9DB 4WQOC 2NN2A 4W9KB 2E31B 4AP2A 1R29A 3E4UA 3GA1A 3M52A 4W9HH 4BKSB 5EUPA 1R2BA 4CXIA 4AWJB 1DSXA 4W9HB 2FNJC 4W9IB 2NZ0B 3ZTCB 5A6RA 2OVRA 1LM8C 2IF5A 1R28A 1EXBE 2IZVC 2PPIA 4ZOUA 2C9WC 3HVEA 4BKTB 4W9JB 1EOFA 4BGCA 3KVTA 3ZUNB 2Z8HA 2E32B 5H7HA 5IBKA 1FQVB 2Q81A 4JTAB 1QDWA 4CXJA 3HQIA 5HZGC 3I3NA 3M8VA 4U2MA 3OHUA 1NN7A 5BXHA 1EODA 3WSOB 1P22B 2IHCA 4J8ZA 4W9EB 2R9RB 2P1NA 4W9CB 1S1GA 3ZNGB 5DAFA 1BUOA 3C6PA 3HU6A 3L2OA 5BXDA 2OVPA 2ASSA 3BIMA 4B95B 4B9KE 3OGMA 3OHVA 3OGLA 4CXTA 1LDKD 4HXIA 3LNMB 3MKSA 3C6NA 3DCGB 3ZTDB 3M5BA 1A68A 3C6OA 3LBZA 2I2RA 5BO4C 5LLIB 4JGHC 2VPKA 3DRZA 2JZ3C 4N9F5 4U2NA 1LQBB 2A79B 4U77A 4APFA 1FS1B 5A15A 4CP3A 4B9KB 1CS3A 1FS2B 4JTDB 4W9GB 1QDVA 3OGKA 3ZRCB 1VCBB 2MA9C 2P1PA 4JTCB 4AJYC 2VKPA 3ZRFB 4W9LB
chains in the Genus database with same CATH superfamily
3M4TA 4W9FB 3HTMA 4UIJA 2P1OA 1EOEA 3V7DA 3LUTB 5HYWB 3B84A 5H7GA 3ZKJB 2P1MA 3FKCA 3DRYA 2P1QA 2ASTA 3HVEB 4UYIA 1T1DA 5JH5B 2OVQA 5FTAA 5DADA 4I6JC 5BXBA 1HV2A 2YY9A 4EOZA 1NEXA 4CRHA 4W9DB 4WQOC 2NN2A 4W9KB 2E31B 4AP2A 1R29A 3E4UA 3GA1A 3M52A 4W9HH 3DRXA 4BKSB 5EUPA 1R2BA 4CXIA 4AWJB 1DSXA 4W9HB 2FNJC 4W9IB 2NZ0B 3ZTCB 5A6RA 2OVRA 1LM8C 2IF5A 1R28A 1EXBE 2IZVC 2PPIA 4ZOUA 2C9WC 3HVEA 4BKTB 4W9JB 1EOFA 4BGCA 3KVTA 3ZUNB 2Z8HA 2E32B 5H7HA 5IBKA 1FQVB 2Q81A 4JTAB 1QDWA 4CXJA 3HQIA 5HZGC 3I3NA 3M8VA 4U2MA 3OHUA 1NN7A 5BXHA 1EODA 3WSOB 1P22B 2IHCA 4J8ZA 4W9EB 2R9RB 2P1NA 4W9CB 1S1GA 3ZNGB 5DAFA 1BUOA 3C6PA 3HU6A 3L2OA 5BXDA 2OVPA 2ASSA 3BIMA 4B95B 4B9KE 3OGMA 3OHVA 3OGLA 4CXTA 1LDKD 4HXIA 3LNMB 3MKSA 3C6NA 3DCGB 3ZTDB 3M5BA 1A68A 3C6OA 3LBZA 2I2RA 5BO4C 5LLIB 4JGHC 2VPKA 3DRZA 2JZ3C 4N9F5 4U2NA 1LQBB 2A79B 4U77A 4YY8A 4APFA 1FS1B 5A15A 4CP3A 4B9KB 1CS3A 1FS2B 4JTDB 4W9GB 1QDVA 3OGKA 3ZRCB 1VCBB 2MA9C 2P1PA 4ZGCA 4JTCB 4AJYC 2VKPA 3ZRFB 4W9LB
chains in the Genus database with same CATH topology
3M4TA 4W9FB 3HTMA 4UIJA 2P1OA 1EOEA 3V7DA 3LUTB 5HYWB 3B84A 5H7GA 3ZKJB 2P1MA 3FKCA 3DRYA 2P1QA 2ASTA 3HVEB 4UYIA 1T1DA 5JH5B 2OVQA 5FTAA 5DADA 4I6JC 5BXBA 1HV2A 2YY9A 4EOZA 1NEXA 4CRHA 4W9DB 4WQOC 2NN2A 4W9KB 2E31B 4AP2A 1R29A 3E4UA 3GA1A 3M52A 4W9HH 3DRXA 4BKSB 5EUPA 1R2BA 4CXIA 4AWJB 1DSXA 4W9HB 2FNJC 4W9IB 2NZ0B 3ZTCB 5A6RA 2OVRA 1LM8C 2IF5A 1R28A 1EXBE 2IZVC 2PPIA 4ZOUA 2C9WC 3HVEA 4BKTB 4W9JB 1EOFA 4BGCA 3KVTA 3ZUNB 2Z8HA 2E32B 5H7HA 5IBKA 1FQVB 2Q81A 4JTAB 1QDWA 4CXJA 3HQIA 5HZGC 3I3NA 3M8VA 4U2MA 3OHUA 1NN7A 5BXHA 1EODA 3WSOB 1P22B 2IHCA 4J8ZA 4W9EB 2R9RB 2P1NA 4W9CB 1S1GA 3ZNGB 5DAFA 1BUOA 3C6PA 3HU6A 3L2OA 5BXDA 2OVPA 2ASSA 3BIMA 4B95B 4B9KE 3OGMA 3OHVA 3OGLA 4CXTA 1LDKD 4HXIA 3LNMB 3MKSA 3C6NA 3DCGB 3ZTDB 3M5BA 1A68A 3C6OA 3LBZA 2I2RA 5BO4C 5LLIB 4JGHC 2VPKA 3DRZA 2JZ3C 4N9F5 4U2NA 1LQBB 2A79B 4U77A 4YY8A 4APFA 1FS1B 5A15A 4CP3A 4B9KB 1CS3A 1FS2B 4JTDB 4W9GB 1QDVA 3OGKA 3ZRCB 1VCBB 2MA9C 2P1PA 4ZGCA 4JTCB 4AJYC 2VKPA 3ZRFB 4W9LB
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3M4T A;  4W9F B;  3HTM A;  4UIJ A;  2P1O A;  1EOE A;  3V7D A;  3LUT B;  5HYW B;  3B84 A;  5H7G A;  3ZKJ B;  2P1M A;  3FKC A;  2P1Q A;  2AST A;  3HVE B;  4UYI A;  1T1D A;  5JH5 B;  2OVQ A;  5FTA A;  5DAD A;  4I6J C;  5BXB A;  1HV2 A;  2YY9 A;  4EOZ A;  1NEX A;  4CRH A;  4W9D B;  4WQO C;  2NN2 A;  4W9K B;  2E31 B;  4AP2 A;  1R29 A;  3E4U A;  3GA1 A;  3M52 A;  4W9H H;  4BKS B;  5EUP A;  1R2B A;  4CXI A;  4AWJ B;  1DSX A;  4W9H B;  2FNJ C;  4W9I B;  2NZ0 B;  3ZTC B;  5A6R A;  2OVR A;  1LM8 C;  2IF5 A;  1R28 A;  1EXB E;  2IZV C;  2PPI A;  4ZOU A;  2C9W C;  3HVE A;  4BKT B;  4W9J B;  1EOF A;  4BGC A;  3KVT A;  3ZUN B;  2Z8H A;  2E32 B;  5H7H A;  5IBK A;  1FQV B;  2Q81 A;  4JTA B;  1QDW A;  4CXJ A;  3HQI A;  5HZG C;  3I3N A;  3M8V A;  4U2M A;  3OHU A;  1NN7 A;  5BXH A;  1EOD A;  3WSO B;  1P22 B;  2IHC A;  4J8Z A;  4W9E B;  2R9R B;  2P1N A;  4W9C B;  1S1G A;  3ZNG B;  5DAF A;  1BUO A;  3C6P A;  3HU6 A;  3L2O A;  5BXD A;  2OVP A;  2ASS A;  3BIM A;  4B95 B;  4B9K E;  3OGM A;  3OHV A;  3OGL A;  4CXT A;  1LDK D;  4HXI A;  3LNM B;  3MKS A;  3C6N A;  3DCG B;  3ZTD B;  3M5B A;  1A68 A;  3C6O A;  3LBZ A;  2I2R A;  5BO4 C;  5LLI B;  4JGH C;  2VPK A;  3DRZ A;  2JZ3 C;  4N9F 5;  4U2N A;  1LQB B;  2A79 B;  4U77 A;  4APF A;  1FS1 B;  5A15 A;  4CP3 A;  4B9K B;  1CS3 A;  1FS2 B;  4JTD B;  4W9G B;  1QDV A;  3OGK A;  3ZRC B;  1VCB B;  2MA9 C;  2P1P A;  4JTC B;  4AJY C;  2VKP A;  3ZRF B;  4W9L B; 
#chains in the Genus database with same CATH topology
 3M4T A;  4W9F B;  3HTM A;  4UIJ A;  2P1O A;  1EOE A;  3V7D A;  3LUT B;  5HYW B;  3B84 A;  5H7G A;  3ZKJ B;  2P1M A;  3FKC A;  3DRY A;  2P1Q A;  2AST A;  3HVE B;  4UYI A;  1T1D A;  5JH5 B;  2OVQ A;  5FTA A;  5DAD A;  4I6J C;  5BXB A;  1HV2 A;  2YY9 A;  4EOZ A;  1NEX A;  4CRH A;  4W9D B;  4WQO C;  2NN2 A;  4W9K B;  2E31 B;  4AP2 A;  1R29 A;  3E4U A;  3GA1 A;  3M52 A;  4W9H H;  3DRX A;  4BKS B;  5EUP A;  1R2B A;  4CXI A;  4AWJ B;  1DSX A;  4W9H B;  2FNJ C;  4W9I B;  2NZ0 B;  3ZTC B;  5A6R A;  2OVR A;  1LM8 C;  2IF5 A;  1R28 A;  1EXB E;  2IZV C;  2PPI A;  4ZOU A;  2C9W C;  3HVE A;  4BKT B;  4W9J B;  1EOF A;  4BGC A;  3KVT A;  3ZUN B;  2Z8H A;  2E32 B;  5H7H A;  5IBK A;  1FQV B;  2Q81 A;  4JTA B;  1QDW A;  4CXJ A;  3HQI A;  5HZG C;  3I3N A;  3M8V A;  4U2M A;  3OHU A;  1NN7 A;  5BXH A;  1EOD A;  3WSO B;  1P22 B;  2IHC A;  4J8Z A;  4W9E B;  2R9R B;  2P1N A;  4W9C B;  1S1G A;  3ZNG B;  5DAF A;  1BUO A;  3C6P A;  3HU6 A;  3L2O A;  5BXD A;  2OVP A;  2ASS A;  3BIM A;  4B95 B;  4B9K E;  3OGM A;  3OHV A;  3OGL A;  4CXT A;  1LDK D;  4HXI A;  3LNM B;  3MKS A;  3C6N A;  3DCG B;  3ZTD B;  3M5B A;  1A68 A;  3C6O A;  3LBZ A;  2I2R A;  5BO4 C;  5LLI B;  4JGH C;  2VPK A;  3DRZ A;  2JZ3 C;  4N9F 5;  4U2N A;  1LQB B;  2A79 B;  4U77 A;  4YY8 A;  4APF A;  1FS1 B;  5A15 A;  4CP3 A;  4B9K B;  1CS3 A;  1FS2 B;  4JTD B;  4W9G B;  1QDV A;  3OGK A;  3ZRC B;  1VCB B;  2MA9 C;  2P1P A;  4ZGC A;  4JTC B;  4AJY C;  2VKP A;  3ZRF B;  4W9L B; 
#chains in the Genus database with same CATH homology
 3M4T A;  4W9F B;  3HTM A;  4UIJ A;  2P1O A;  1EOE A;  3V7D A;  3LUT B;  5HYW B;  3B84 A;  5H7G A;  3ZKJ B;  2P1M A;  3FKC A;  3DRY A;  2P1Q A;  2AST A;  3HVE B;  4UYI A;  1T1D A;  5JH5 B;  2OVQ A;  5FTA A;  5DAD A;  4I6J C;  5BXB A;  1HV2 A;  2YY9 A;  4EOZ A;  1NEX A;  4CRH A;  4W9D B;  4WQO C;  2NN2 A;  4W9K B;  2E31 B;  4AP2 A;  1R29 A;  3E4U A;  3GA1 A;  3M52 A;  4W9H H;  3DRX A;  4BKS B;  5EUP A;  1R2B A;  4CXI A;  4AWJ B;  1DSX A;  4W9H B;  2FNJ C;  4W9I B;  2NZ0 B;  3ZTC B;  5A6R A;  2OVR A;  1LM8 C;  2IF5 A;  1R28 A;  1EXB E;  2IZV C;  2PPI A;  4ZOU A;  2C9W C;  3HVE A;  4BKT B;  4W9J B;  1EOF A;  4BGC A;  3KVT A;  3ZUN B;  2Z8H A;  2E32 B;  5H7H A;  5IBK A;  1FQV B;  2Q81 A;  4JTA B;  1QDW A;  4CXJ A;  3HQI A;  5HZG C;  3I3N A;  3M8V A;  4U2M A;  3OHU A;  1NN7 A;  5BXH A;  1EOD A;  3WSO B;  1P22 B;  2IHC A;  4J8Z A;  4W9E B;  2R9R B;  2P1N A;  4W9C B;  1S1G A;  3ZNG B;  5DAF A;  1BUO A;  3C6P A;  3HU6 A;  3L2O A;  5BXD A;  2OVP A;  2ASS A;  3BIM A;  4B95 B;  4B9K E;  3OGM A;  3OHV A;  3OGL A;  4CXT A;  1LDK D;  4HXI A;  3LNM B;  3MKS A;  3C6N A;  3DCG B;  3ZTD B;  3M5B A;  1A68 A;  3C6O A;  3LBZ A;  2I2R A;  5BO4 C;  5LLI B;  4JGH C;  2VPK A;  3DRZ A;  2JZ3 C;  4N9F 5;  4U2N A;  1LQB B;  2A79 B;  4U77 A;  4YY8 A;  4APF A;  1FS1 B;  5A15 A;  4CP3 A;  4B9K B;  1CS3 A;  1FS2 B;  4JTD B;  4W9G B;  1QDV A;  3OGK A;  3ZRC B;  1VCB B;  2MA9 C;  2P1P A;  4ZGC A;  4JTC B;  4AJY C;  2VKP A;  3ZRF B;  4W9L B;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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